mRNA_H-canaliculatus_F_contig12385.2025.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12385.2025.1
Unique NamemRNA_H-canaliculatus_F_contig12385.2025.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12385.2025.1 vs. uniprot
Match: D8LEE9_ECTSI (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEE9_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 4.540e-15
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    1 LRINFNITMLALPCDYASVDVLDLLGTNKVNMTKNIVKVRVDSS 132
            LRINFNITMLALPCDYASVDVLDLLGTNKVNMT+NIVK   D +
Sbjct:   65 LRINFNITMLALPCDYASVDVLDLLGTNKVNMTQNIVKWHTDEN 108
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BLAST of mRNA_H-canaliculatus_F_contig12385.2025.1 vs. uniprot
Match: A0A835YQ98_9STRA (Endoplasmic reticulum-golgi intermediate compartment-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ98_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 9.510e-13
Identity = 31/42 (73.81%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    1 LRINFNITMLALPCDYASVDVLDLLGTNKVNMTKNIVKVRVD 126
            LRINFN+TMLALPC+YA++DVLD+LGTN+VN+TKNI+K   D
Sbjct:   66 LRINFNVTMLALPCEYATIDVLDVLGTNRVNITKNIIKWHTD 107
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BLAST of mRNA_H-canaliculatus_F_contig12385.2025.1 vs. uniprot
Match: A0A2D4C1G0_PYTIN (Endoplasmic reticulum-Golgi intermediate compartment protein, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C1G0_PYTIN)

HSP 1 Score: 63.2 bits (152), Expect = 4.940e-10
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    1 LRINFNITMLALPCDYASVDVLDLLGTNKVNMTKNIVKVRVD 126
            LRINFNIT+  LPC++ASVDV DL GT K NMTKNI K+R+D
Sbjct:   68 LRINFNITVPDLPCEFASVDVSDLTGTRKHNMTKNIYKIRID 109
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BLAST of mRNA_H-canaliculatus_F_contig12385.2025.1 vs. uniprot
Match: A0A7S3ZRX9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZRX9_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 6.810e-10
Identity = 28/42 (66.67%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    1 LRINFNITMLALPCDYASVDVLDLLGTNKVNMTKNIVKVRVD 126
            LRINFN+TML L CDYA+VDV+D+LGTN +N+TKN+ K ++D
Sbjct:   65 LRINFNVTMLDLQCDYAAVDVVDVLGTNSMNVTKNVEKWQLD 106
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BLAST of mRNA_H-canaliculatus_F_contig12385.2025.1 vs. uniprot
Match: K8YVV3_NANGC (Thioredoxin domain-containing protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YVV3_NANGC)

HSP 1 Score: 62.0 bits (149), Expect = 1.250e-9
Identity = 28/44 (63.64%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 LRINFNITMLALPCDYASVDVLDLLGTNKVNMTKNIVKVRVDSS 132
            +RINFNITML +PC++A+VDVLD+LGTN+ N+TKNI K  +D +
Sbjct:   18 IRINFNITMLDVPCEFATVDVLDVLGTNQQNVTKNIEKWNLDQN 61
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BLAST of mRNA_H-canaliculatus_F_contig12385.2025.1 vs. uniprot
Match: A0A7S3JS36_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JS36_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.270e-9
Identity = 27/44 (61.36%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 LRINFNITMLALPCDYASVDVLDLLGTNKVNMTKNIVKVRVDSS 132
            LRINFNITM+ L CD+A+VDV+D+LGTN +N+TKN+ K ++D +
Sbjct:   66 LRINFNITMMELQCDFAAVDVVDILGTNSMNVTKNVEKWQLDEN 109
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BLAST of mRNA_H-canaliculatus_F_contig12385.2025.1 vs. uniprot
Match: A0A8K1FFR0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FFR0_PYTOL)

HSP 1 Score: 62.0 bits (149), Expect = 1.270e-9
Identity = 28/42 (66.67%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    1 LRINFNITMLALPCDYASVDVLDLLGTNKVNMTKNIVKVRVD 126
            LRINFNIT+  LPC++ASVDV D+ GT K NMTKN+ K+R+D
Sbjct:   68 LRINFNITVPDLPCEFASVDVSDMTGTRKHNMTKNVYKIRID 109
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BLAST of mRNA_H-canaliculatus_F_contig12385.2025.1 vs. uniprot
Match: A0A4D9CME8_9STRA (Thioredoxin domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CME8_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.280e-9
Identity = 28/44 (63.64%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 LRINFNITMLALPCDYASVDVLDLLGTNKVNMTKNIVKVRVDSS 132
            +RINFNITML +PC++A+VDVLD+LGTN+ N+TKNI K  +D +
Sbjct:  121 IRINFNITMLDVPCEFATVDVLDVLGTNQQNVTKNIEKWNLDQN 164
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BLAST of mRNA_H-canaliculatus_F_contig12385.2025.1 vs. uniprot
Match: K3XBV9_GLOUD (Thioredoxin domain-containing protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3XBV9_GLOUD)

HSP 1 Score: 61.6 bits (148), Expect = 1.740e-9
Identity = 28/42 (66.67%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    1 LRINFNITMLALPCDYASVDVLDLLGTNKVNMTKNIVKVRVD 126
            +RINFNIT+  LPC++ASVDV D+ GT K NMTKNI K+R+D
Sbjct:   68 MRINFNITVPDLPCEFASVDVSDMTGTRKHNMTKNIYKIRID 109
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12385.2025.1 vs. uniprot
Match: A0A7S2PQU9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PQU9_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.740e-9
Identity = 28/43 (65.12%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 LRINFNITMLALPCDYASVDVLDLLGTNKVNMTKNIVKVRVDS 129
            +R+NFN+TML L CDY SVDVLD LGTN+ N+TKN+ K ++DS
Sbjct:   79 VRLNFNVTMLDLHCDYVSVDVLDALGTNRQNITKNVEKWQLDS 121
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12385.2025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEE9_ECTSI4.540e-1586.36Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
A0A835YQ98_9STRA9.510e-1373.81Endoplasmic reticulum-golgi intermediate compartme... [more]
A0A2D4C1G0_PYTIN4.940e-1071.43Endoplasmic reticulum-Golgi intermediate compartme... [more]
A0A7S3ZRX9_9STRA6.810e-1066.67Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
K8YVV3_NANGC1.250e-963.64Thioredoxin domain-containing protein n=1 Tax=Nann... [more]
A0A7S3JS36_9STRA1.270e-961.36Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A8K1FFR0_PYTOL1.270e-966.67Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A4D9CME8_9STRA1.280e-963.64Thioredoxin domain-containing protein n=2 Tax=Mono... [more]
K3XBV9_GLOUD1.740e-966.67Thioredoxin domain-containing protein n=2 Tax=Pyth... [more]
A0A7S2PQU9_9STRA1.740e-965.12Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12385contigH-canaliculatus_F_contig12385:260..460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue3.1e-07
Seed eggNOG ortholog2880.D8LEE9
KEGG koko:K20365,ko:K20367
EggNOG free text desc.vesicle-mediated transport
EggNOG OGsCOG0445@1,KOG2667@2759
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-00_002040.1
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size201
Cds size177
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928953.1487653-CDS-H-canaliculatus_F_contig12385:259..4361622928953.1487653-CDS-H-canaliculatus_F_contig12385:259..436Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12385 260..436 -
1696845627.5966344-CDS-H-canaliculatus_F_contig12385:259..4361696845627.5966344-CDS-H-canaliculatus_F_contig12385:259..436Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12385 260..436 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928953.158943-UTR-H-canaliculatus_F_contig12385:436..4601622928953.158943-UTR-H-canaliculatus_F_contig12385:436..460Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12385 437..460 -
1696845627.6093028-UTR-H-canaliculatus_F_contig12385:436..4601696845627.6093028-UTR-H-canaliculatus_F_contig12385:436..460Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12385 437..460 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12385.2025.1prot_H-canaliculatus_F_contig12385.2025.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12385 260..436 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12385.2025.1

>prot_H-canaliculatus_F_contig12385.2025.1 ID=prot_H-canaliculatus_F_contig12385.2025.1|Name=mRNA_H-canaliculatus_F_contig12385.2025.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=59bp
MLALPCDYASVDVLDLLGTNKVNMTKNIVKVRVDSSRPTSIVIPAFSLLQ
AWTSRDHLR
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mRNA from alignment at H-canaliculatus_F_contig12385:260..460-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12385.2025.1 ID=mRNA_H-canaliculatus_F_contig12385.2025.1|Name=mRNA_H-canaliculatus_F_contig12385.2025.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=201bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12385:260..460- (Hapterophycus canaliculatus Oshoro5f female)
CTGCGCATCAACTTCAATATCACCATGCTGGCGCTACCGTGCGACTACGC
TAGCGTGGACGTGCTAGACCTGCTCGGCACCAACAAGGTCAACATGACCA
AGAACATAGTCAAGGTACGTGTCGACTCGTCACGTCCAACAAGTATAGTG
ATACCTGCGTTCTCTTTACTCCAAGCTTGGACTTCGCGCGATCATCTTAG
G
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12385:260..460-

>mRNA_H-canaliculatus_F_contig12385.2025.1 ID=mRNA_H-canaliculatus_F_contig12385.2025.1|Name=mRNA_H-canaliculatus_F_contig12385.2025.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=354bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12385:260..460- (Hapterophycus canaliculatus Oshoro5f female)
ATGCTGGCGCTACCGTGCGACTACGCTAGCGTGGACGTGCTAGACCTGCT
CGGCACCAACAAGGTCAACATGACCAAGAACATAGTCAAGGTACGTGTCG
ACTCGTCACGTCCAACAAGTATAGTGATACCTGCGTTCTCTTTACTCCAA
GCTTGGACTTCGCGCGATCATCTTAGGATGCTGGCGCTACCGTGCGACTA
CGCTAGCGTGGACGTGCTAGACCTGCTCGGCACCAACAAGGTCAACATGA
CCAAGAACATAGTCAAGGTACGTGTCGACTCGTCACGTCCAACAAGTATA
GTGATACCTGCGTTCTCTTTACTCCAAGCTTGGACTTCGCGCGATCATCT
TAGG
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