mRNA_H-canaliculatus_F_contig12374.2021.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12374.2021.1
Unique NamemRNA_H-canaliculatus_F_contig12374.2021.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig12374.2021.1 vs. uniprot
Match: D7FLV2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV2_ECTSI)

HSP 1 Score: 331 bits (849), Expect = 5.020e-110
Identity = 187/291 (64.26%), Postives = 223/291 (76.63%), Query Frame = 1
Query:    1 SFTGLLVVIDKRVARSIGLSHAFIFASGALLTASLLHIVPEALEGLEEKYDSLHDLGLYAGVAILGGLSFSVLIHALLESGHSHGESGGSHSHAPGG--VVTAGGPANRSAVSGVPQEEEDDGDDGMIKAPSNGSFLGELPKRSGLDGLEVEHADMSATQPPTPAGECPSTGNLKSLIAAREGRSLLDLRGLQPVCWNVIAGDLVHNFADGVTIGAAFLSCSATIGWTVTASAVLHEVPHELADFMALLNGGMSVKQAFLYNFLSALSAVLGTAIILALGSSLSDAQVSIV 867
            SF GLLVV++KRVA SIGLSHAFIFASGALLTA+LLHI+PEA+EGL+  YD+LHDLGLYA + +L GL  S++IH L+ESGHSH  +  +HSH  G   V   GG  + + VS       DD    M    + G  +   P  +    ++++ AD+  TQPP+PA    ST NL++LIA REGRSLLD++GLQPVCWNV+ GDLVHNFADGVTIGAAFL+CSATIGWTVTASAVLHE+PHE+ADFMALLNGGMS+KQAF YNFLSALSAVLGT IIL+LG +LSD  VSIV
Sbjct:    5 SFAGLLVVVNKRVAYSIGLSHAFIFASGALLTAALLHIIPEAMEGLDSSYDNLHDLGLYASLTVLSGLFVSIVIHGLMESGHSHSPNE-AHSHGGGEETVRPGGGNGHHARVS-------DDASTMMPLGLAEGDKVSAWPGGNSPQAVQIQ-ADV--TQPPSPAES--STDNLRALIAEREGRSLLDVKGLQPVCWNVVIGDLVHNFADGVTIGAAFLTCSATIGWTVTASAVLHELPHEIADFMALLNGGMSLKQAFAYNFLSALSAVLGTIIILSLGDTLSDKDVSIV 282          
BLAST of mRNA_H-canaliculatus_F_contig12374.2021.1 vs. uniprot
Match: A0A6H5L662_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L662_9PHAE)

HSP 1 Score: 332 bits (850), Expect = 1.570e-107
Identity = 189/292 (64.73%), Postives = 223/292 (76.37%), Query Frame = 1
Query:    1 SFTGLLVVIDKRVARSIGLSHAFIFASGALLTASLLHIVPEALEGLEEKYDSLHDLGLYAGVAILGGLSFSVLIHALLESGHSHGESGGSHSHAPGGVVTA---GGPANRSAVSGVPQEEEDDGDDGMIKAPSNGSFLGELPKRSGLDGLEVEHADMSATQPPTPAGECPSTGNLKSLIAAREGRSLLDLRGLQPVCWNVIAGDLVHNFADGVTIGAAFLSCSATIGWTVTASAVLHEVPHELADFMALLNGGMSVKQAFLYNFLSALSAVLGTAIILALGSSLSDAQVSIV 867
            SF GLLVV +KRVA SIGLSHAFIFASGALLTA+L+HI+PEA+EGL+  YD+LHDLGLYAG+ +LGGLS SV+IH L+ESGHSH    G HSH  GG  T    GG  + + VS       D     M    + G  +   P  +    ++++ AD+  TQPP+PA    ST NL++LIA R GRSLLD++GLQPVCWNV+ GDLVHNFADG+TIGAAFL+CSAT+GWTVTASAVLHE+PHE+ADFMALLNGGMS+KQAF YNFLSALSAVLGT IILALG +LSD  VSIV
Sbjct:  203 SFAGLLVVANKRVAYSIGLSHAFIFASGALLTAALVHIIPEAMEGLDSSYDNLHDLGLYAGLTVLGGLSVSVVIHGLMESGHSHSPHEG-HSHG-GGTETVRPGGGHGHHARVS-------DGAGTTMPLGMAEGDKVSAWPGGNSPHAVQIQ-ADV--TQPPSPAES--STDNLRALIAERAGRSLLDVKGLQPVCWNVVIGDLVHNFADGLTIGAAFLTCSATVGWTVTASAVLHELPHEIADFMALLNGGMSLKQAFAYNFLSALSAVLGTIIILALGDTLSDKDVSIV 480          
BLAST of mRNA_H-canaliculatus_F_contig12374.2021.1 vs. uniprot
Match: D7FLW4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLW4_ECTSI)

HSP 1 Score: 301 bits (770), Expect = 5.520e-96
Identity = 170/291 (58.42%), Postives = 204/291 (70.10%), Query Frame = 1
Query:    1 SFTGLLVVIDKRVARSIGLSHAFIFASGALLTASLLHIVPEALEGLEEKYDSLHDLGLYAGVAILGGLSFSVLIHALLESGHSH--GESGGSHSHAPGGVVTAGGPANRSAVSGVPQEEEDDGDDGMIKAPSNGSFLGELPKRSGLDGLEVEHADMSATQPPTPAGECPSTGNLKSLIAAREGRSLLDLRGLQPVCWNVIAGDLVHNFADGVTIGAAFLSCSATIGWTVTASAVLHEVPHELADFMALLNGGMSVKQAFLYNFLSALSAVLGTAIILALGSSLSDAQVSIV 867
            SF G++VV  K VA +I LSHAF+FASGALLTA+LLHI+PEALEGLEE Y SLHDLGLYAG+A++GG+S  +++HALLESGHSH  GES      A   V   GG A  SA +G  +                                        AT PP+P     ++ NL++LI+AR+G+SLLD++GL+PVCWNVIAGDLVHNFADGV IGAAFLSCS T+GWTV AS VLHEVPHE+ADFMALLNGGMS+ QAF+YNFLSALSAVLGT IILAL  +LS+  ++IV
Sbjct:  197 SFAGIVVVASKHVANNIDLSHAFVFASGALLTAALLHIIPEALEGLEESYGSLHDLGLYAGLAVMGGMSLGIVLHALLESGHSHSPGESXXXXXXA---VEAGGGGAKASAYTGTSE----------------------------------------ATLPPSPVES--NSDNLQALISARKGKSLLDVKGLEPVCWNVIAGDLVHNFADGVAIGAAFLSCSTTMGWTVAASVVLHEVPHEVADFMALLNGGMSLMQAFVYNFLSALSAVLGTVIILALQDTLSEKDIAIV 442          
BLAST of mRNA_H-canaliculatus_F_contig12374.2021.1 vs. uniprot
Match: D8LNP7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNP7_ECTSI)

HSP 1 Score: 251 bits (641), Expect = 2.540e-78
Identity = 144/289 (49.83%), Postives = 175/289 (60.55%), Query Frame = 1
Query:    1 SFTGLLVVIDKRVARSIGLSHAFIFASGALLTASLLHIVPEALEGLEEKYDSLHDLGLYAGVAILGGLSFSVLIHALLESGHSHGESGGSHSHAPGGVVTAGGPANRSAVSGVPQEEEDDGDDGMIKAPSNGSFLGELPKRSGLDGLEVEHADMSATQPPTPAGECPSTGNLKSLIAAREGRSLLDLRGLQPVCWNVIAGDLVHNFADGVTIGAAFLSCSATIGWTVTASAVLHEVPHELADFMALLNGGMSVKQAFLYNFLSALSAVLGTAIILALGSSLSDAQVSIV 867
            SFTG+L +I+++VA +IGLSH F FASGALLTASLLHIVPE+LEG+  +YD LHD GL+AG+AILGG+ FS+LIHALLESGH                                                                                AG  P       L    + RSL DL+GL+PVCWNVIAG+LVHNFADGVTIGAAFL+C +++GWT+TAS VLHE+P ELADF+ALL GGMS+KQAFL+NFLSAL+ VLG  +IL+L S LSDA VS++
Sbjct:   78 SFTGILTIINQKVANAIGLSHTFTFASGALLTASLLHIVPESLEGIAAEYDHLHDAGLWAGLAILGGIGFSILIHALLESGH-------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXAGTAP-------LALTDKERSLFDLKGLKPVCWNVIAGELVHNFADGVTIGAAFLTCGSSMGWTITASTVLHEIPQELADFIALLAGGMSLKQAFLFNFLSALTCVLGAVVILSLRSQLSDADVSVI 304          
BLAST of mRNA_H-canaliculatus_F_contig12374.2021.1 vs. uniprot
Match: D7FRW4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRW4_ECTSI)

HSP 1 Score: 220 bits (561), Expect = 7.130e-65
Identity = 122/289 (42.21%), Postives = 171/289 (59.17%), Query Frame = 1
Query:    1 SFTGLLVVIDKRVARSIGLSHAFIFASGALLTASLLHIVPEALEGLEEKYDSLHDLGLYAGVAILGGLSFSVLIHALLESGHSHGESGGSHSHAPGGVVTAGGPANRSAVSGVPQEEEDDGDDGMIKAPSNGSFLGELPKRSGLDGLEVEHADMSATQPPTPAGECPSTGNLKSLIAAREGRSLLDLRGLQPVCWNVIAGDLVHNFADGVTIGAAFLSCSATIGWTVTASAVLHEVPHELADFMALLNGGMSVKQAFLYNFLSALSAVLGTAIILALGSSLSDAQVSIV 867
            SF G+ ++I+KR+A  + LSHA++FA+GA+LTASL+HIVPE+ E  E+    L+DLG++ GV +L G++ SV+I A+  +GHSH                 G PA    V         + D G  + P                           T P  P        NL  L+  R+GR+L D +GL+P+CWNVI GD VH+F  G TIGAAFLSC +T+GWT+TAS ++HEVP E+ADF+ALLNGGMS+KQA  +N +S + A+LG  +ILALG   ++ Q++I+
Sbjct:  215 SFVGIFLLINKRIANGVDLSHAYMFATGAILTASLIHIVPESFERFEDSELGLYDLGIHTGVTMLAGITASVIIRAVCTAGHSH----------------TGAPATAKVV---------EADGGQSRGP---------------------------TTPTIP-------DNLLELVEQRKGRALFDFKGLKPICWNVIVGDAVHSFTCGFTIGAAFLSCGSTMGWTITASTLIHEVPSEMADFVALLNGGMSIKQALTWNLVSGIPAILGAVLILALGDQFTNFQIAII 444          
BLAST of mRNA_H-canaliculatus_F_contig12374.2021.1 vs. uniprot
Match: A0A6H5KN39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN39_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 1.680e-63
Identity = 120/289 (41.52%), Postives = 166/289 (57.44%), Query Frame = 1
Query:    1 SFTGLLVVIDKRVARSIGLSHAFIFASGALLTASLLHIVPEALEGLEEKYDSLHDLGLYAGVAILGGLSFSVLIHALLESGHSHGESGGSHSHAPGGVVTAGGPANRSAVSGVPQEEEDDGDDGMIKAPSNGSFLGELPKRSGLDGLEVEHADMSATQPPTPAGECPSTGNLKSLIAAREGRSLLDLRGLQPVCWNVIAGDLVHNFADGVTIGAAFLSCSATIGWTVTASAVLHEVPHELADFMALLNGGMSVKQAFLYNFLSALSAVLGTAIILALGSSLSDAQVSIV 867
            SF G+ ++I KR+A  I LSHA++FA+GA+LTA+L+HI+PE+ E  E+    LHDLG++ GV +L G++ S++I A+  +GHSH                 G PA    V                                G DG +        T P  P        NL  L+  R+GR+L D +GL+P+CWNVI GD VH+F  G TIGAAFLSC +T+GWT+TAS ++HEVP E+ADF+ALLNGGMS+KQA  +N  S + A+LG  +IL LG   +  Q++I+
Sbjct:  211 SFAGIFLLISKRIANGIDLSHAYMFATGAILTAALIHIIPESFERFEDAELGLHDLGIHTGVTMLAGITASIIIRAVCTAGHSH----------------TGAPATAKVV--------------------------------GADGSQ----SRGPTTPTIPE-------NLWELVQQRKGRALFDFKGLKPICWNVIVGDAVHSFTCGFTIGAAFLSCGSTMGWTITASTLIHEVPSEMADFVALLNGGMSIKQALTWNLASGIPAILGAVLILGLGDQFTTFQIAII 440          
BLAST of mRNA_H-canaliculatus_F_contig12374.2021.1 vs. uniprot
Match: A0A6V1U7C3_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1U7C3_HETAK)

HSP 1 Score: 124 bits (310), Expect = 2.300e-28
Identity = 86/279 (30.82%), Postives = 140/279 (50.18%), Query Frame = 1
Query:   43 RSIGLSHAFIFASGALLTASLLHIVPEALEGLEEKYDSLHDLGLYAGVAILGGLSFSVLIHALLESGHSHGESGGSHSHAPGGVVTAGGPANRSAVSGVPQEEEDDGDDGMIKAPSNGSFLGELPKRS-GLDGLEVE-HADMSATQPPTPAGECPSTGNLKSLIAAREGRSLLDL----------RGLQPVCWNVIAGDLVHNFADGVTIGAAFLSCSATIGWTVTASAVLHEVPHELADFMALLNGGMSVKQAFLYNFLSALSAVLGTAIILALGSSL 843
            ++I +  A  F SGALL+A+++H++PE    +E   D    LG  AG+ ILGGL FS+++H  ++  H+  ++       PG  V       R+AV+     E   G D +++       +   P+    ++G   +    ++AT       +C   G  +     R+GRS + L          RG++P  WN++ GD + N  DG+ I  AF  C +++GW V  + + HE+P E+ DF  L++ G+S  QA L N  S + A+ G  I+L L SSL
Sbjct:  216 KAIAMQLATAFGSGALLSAAIVHLIPEGYALIESFVDG-EQLGTNAGLTILGGLMFSLILHMAIQHKHAAVDA------EPGCSVKE----ERAAVAPTSTFEASPGGDDVVEMALEAEAVEGPPEAQVHVEGDSCDDECGLAATNEVGDCNDCAEEGGGR----LRQGRSAVKLLAALPRVGPVRGVRPQAWNLVLGDCICNGLDGMVIAVAFAGCDSSMGWIVFGAVMSHEIPQEIGDFFVLIDSGLSFGQALLANLFSGVCAIFGGIIVLLLNSSL 479          
BLAST of mRNA_H-canaliculatus_F_contig12374.2021.1 vs. uniprot
Match: A0A6H5K199_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K199_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 2.780e-28
Identity = 79/200 (39.50%), Postives = 97/200 (48.50%), Query Frame = 1
Query:   28 DKRVARSIGLSHAFIFASGALLTASLLHIVPEALEGLEEKYDSLHDLGLYAGVAILGGLSFSVLIHALLESGHSHGESGGSHSHAPGGVVTAGGPANRSAVSGVPQEEEDDGDDGMIKAPSNGSFLGELPKRSGLDGLEVEHADMSATQPPTPAGECPSTGNLKSLIAAREGRSLLDLRGLQPVCWNVIAGDLVHNFADG 627
              +VA +IGLSH F FAS ALLT  LLHI+PE+LEG+  K+D LHD GL+AG AIL    FS+LIHAL+ESGH                                                                        + T P    G+  + GNL +L++ R+GRSL DL+GLQ VCWNVIAG+LV NFADG
Sbjct:   10 STKVAHAIGLSHTFTFASDALLTTFLLHIIPESLEGIVAKHDHLHDAGLWAGPAILDRTGFSILIHALMESGHXXXX-----------------------------------------------XXXXXXXXXXXXXXXXXXXXXAGTAPLALKGKV-TPGNLWALVSERQGRSLFDLKGLQLVCWNVIAGELVRNFADG 161          
BLAST of mRNA_H-canaliculatus_F_contig12374.2021.1 vs. uniprot
Match: A0A7S2XX20_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX20_9STRA)

HSP 1 Score: 115 bits (287), Expect = 4.170e-26
Identity = 90/254 (35.43%), Postives = 119/254 (46.85%), Query Frame = 1
Query:   79 SGALLTASLLHIVPEA---LEGLEEKYDSLHDLGLYAGVAILGGLSFSVLIHALLESGHSHGESGGSHSHAPGGVVTAG-GPANRSAVS-GVPQEEEDDGDDGMIKAPSNGSFLGELPKRSGLDGLEVEHADMSATQPPTPAGECPSTGNLKSLIAAREGRSLLDLRGLQPVCWNVIAGDLVHNFADGVTIGAAFLSCSATIGWTVTASAVLHEVPHELADFMALLNGGMSVKQAFLYNFLSALSAVLGTAIIL 825
            +GA+L+AS LH++PEA   L  + E+     D G   G  IL GL     IH +   GHSH             +V  G G     A+S   P +EE  G +        G    E PK          H  MSA+Q              + L AA +      L  L   CWNV  GDLVHNF DGV + AAF  CS   GW +TA+   HE+P E+AD M LL+ GM V  A  +N +S+++A+LG  ++L
Sbjct:   33 AGAILSASFLHLLPEANIFLSSISEE-----DRGWQGGACILTGLLVGAFIHVIF--GHSHDTVEEIVEERRQSLVGQGAGLEELGAISLQSPSKEEGGGPEPTPVVVQPGDSQSESPKPY-AGSFPRMHLVMSASQ--------------RHLEAAGQ-----TLARLHAHCWNVFFGDLVHNFLDGVLVAAAFSGCSTAKGWAITAAVAAHEIPQEIADVMVLLSAGMPVSGALAFNLVSSMAAILGAVVVL 259          
BLAST of mRNA_H-canaliculatus_F_contig12374.2021.1 vs. uniprot
Match: M4BCL4_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BCL4_HYAAE)

HSP 1 Score: 103 bits (257), Expect = 2.520e-21
Identity = 60/140 (42.86%), Postives = 88/140 (62.86%), Query Frame = 1
Query:  424 SGLDGLEVEHADMSATQPPTPAGECPSTGNLKSLIAAREGR----SL-LDLRGLQPVCWNVIAGDLVHNFADGVTIGAAFLSCSATIGWTVTASAVLHEVPHELADFMALLNGGMSVKQAFLYNFLSALSAVLGTAIILA 828
            S ++G   +H++ S T     AG   S GNL  L+     R    SL ++ R ++P+ + ++ GDL HNF DGV I  AFL+C  T+G +VT S++LHE+P E ADF+ L+  G +  QA L+NFLSAL+A +G A++LA
Sbjct:  294 SPMNGTPAKHSEASET-----AGY--SNGNLPILVGRESTRVSPFSLTVNWRAIKPMAYIILIGDLFHNFVDGVLIATAFLACDDTLGVSVTVSSILHELPQEFADFIILVESGFTPFQAVLFNFLSALTAFIGAAVVLA 426          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12374.2021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLV2_ECTSI5.020e-11064.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L662_9PHAE1.570e-10764.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLW4_ECTSI5.520e-9658.42Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LNP7_ECTSI2.540e-7849.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRW4_ECTSI7.130e-6542.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KN39_9PHAE1.680e-6341.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6V1U7C3_HETAK2.300e-2830.82Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
A0A6H5K199_9PHAE2.780e-2839.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2XX20_9STRA4.170e-2635.43Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
M4BCL4_HYAAE2.520e-2142.86Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12374contigH-canaliculatus_F_contig12374:596..3405 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score339.7
Seed ortholog evalue1.3e-90
Seed eggNOG ortholog2880.D7FLV2
EggNOG free text desc.cellular zinc ion homeostasis
EggNOG OGsCOG0428@1,KOG2693@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size870
Cds size867
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928952.6167908-CDS-H-canaliculatus_F_contig12374:596..6981622928952.6167908-CDS-H-canaliculatus_F_contig12374:596..698Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12374 597..698 -
1696845627.3120565-CDS-H-canaliculatus_F_contig12374:596..6981696845627.3120565-CDS-H-canaliculatus_F_contig12374:596..698Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12374 597..698 -
1622928952.63059-CDS-H-canaliculatus_F_contig12374:2640..34051622928952.63059-CDS-H-canaliculatus_F_contig12374:2640..3405Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12374 2641..3405 -
1696845627.3295715-CDS-H-canaliculatus_F_contig12374:2640..34051696845627.3295715-CDS-H-canaliculatus_F_contig12374:2640..3405Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12374 2641..3405 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12374.2021.1prot_H-canaliculatus_F_contig12374.2021.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12374 597..3405 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12374.2021.1

>prot_H-canaliculatus_F_contig12374.2021.1 ID=prot_H-canaliculatus_F_contig12374.2021.1|Name=mRNA_H-canaliculatus_F_contig12374.2021.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=289bp
SFTGLLVVIDKRVARSIGLSHAFIFASGALLTASLLHIVPEALEGLEEKY
DSLHDLGLYAGVAILGGLSFSVLIHALLESGHSHGESGGSHSHAPGGVVT
AGGPANRSAVSGVPQEEEDDGDDGMIKAPSNGSFLGELPKRSGLDGLEVE
HADMSATQPPTPAGECPSTGNLKSLIAAREGRSLLDLRGLQPVCWNVIAG
DLVHNFADGVTIGAAFLSCSATIGWTVTASAVLHEVPHELADFMALLNGG
MSVKQAFLYNFLSALSAVLGTAIILALGSSLSDAQVSIV
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mRNA from alignment at H-canaliculatus_F_contig12374:596..3405-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12374.2021.1 ID=mRNA_H-canaliculatus_F_contig12374.2021.1|Name=mRNA_H-canaliculatus_F_contig12374.2021.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2810bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12374:596..3405- (Hapterophycus canaliculatus Oshoro5f female)
AGCTTCACGGGGCTCCTGGTGGTGATCGACAAGCGCGTGGCGCGCAGCAT TGGCCTCTCGCACGCCTTCATCTTCGCCTCCGGCGCCCTCCTCACGGCCT CCCTCCTCCACATCGTCCCCGAGGCCCTCGAGGGGCTCGAGGAAAAGTAC GACAGCCTCCACGACCTGGGCCTCTACGCCGGCGTGGCCATCCTCGGAGG CCTGTCCTTCAGCGTCCTCATCCACGCCCTCCTGGAGTCCGGCCACTCTC ACGGCGAGAGCGGCGGCAGCCACTCCCACGCCCCGGGGGGGGTAGTCACT GCGGGGGGACCGGCCAACCGGAGCGCCGTTTCTGGGGTTCCGCAGGAGGA GGAGGACGACGGGGACGACGGGATGATCAAGGCGCCGTCGAACGGCAGCT TCCTGGGGGAGCTGCCGAAGCGGAGCGGTCTCGACGGACTGGAGGTGGAG CACGCGGACATGAGTGCGACGCAGCCGCCGACTCCGGCCGGGGAGTGTCC CAGCACGGGCAACCTGAAATCGCTGATTGCGGCGAGGGAGGGGCGTTCGC TGCTGGACCTCAGGGGCCTCCAGCCGGTGTGCTGGAACGTGATCGCGGGG GACCTGGTGCACAACTTCGCCGACGGGGTCACCATCGGGGCGGCGTTCCT GAGCTGCAGCGCGACCATCGGCTGGACGGTGACGGCGTCCGCGGTCCTGC ACGAGGTGCCCCACGAGCTGGCTGACTTCATGGCGCTGCTCAACGGGGGC ATGAGCGTCAAGCAGGTGCGACTCTTTCTCCTCTCTCTCTCTCTCTGCCT CTTACCGCCGCCGTCTTTTTTGATGTTTTGATGTTTTGATGTTTTGTGTT TTTCCCATCCCATGTACACACCTGCGGTGGCTTTGTTGCGATCTGGGCAT CGATGCGCTCCTGCCGGTACTTCTTTTGATCGGTCCATCTTGTCCTTGGC GGCCCATTCCAAGCCCCTACGTTTTGCACCCCACGGTCCTTCCAAAGTGC CAGGAGTTTTTCGCCCCCAACAGTCCTTCCGAAGTGCCTAGGCTTCGTCC CTGACTGTCTATTCAAGGTGCTTGTAAACATTTCCTCCGACGTCCGAGCT CCGGAGCCTGCACCTTCCCTGCCTCTCCCCCTCTTTCCTCCGCTTCGGAA AAGAAAAGGAGGAAGTGTTCCGAGCGACCGGGAGTCACCAGAGCCGAACA AATCTAGGCCGTTTTTTTTTTCGCGATGTCGAGCACGGAAATCGGAGTCG TTCTTGTCTTGAAACACCAGATGTGTCTGTGTTGCGAAGACGACAAAGTT GTGGGCTAAGGCAGTCGGTGCGCGGCAGTGGATTTGTTGATGTCGCCGCG CACGGGAATGGGGGTTCATCTTTGCCGTCCAATATGCAGTGAGGACGACA AGCGTGAGGCAAGAGAGCCGTCGGCATGCGGCGGTGCCGACGGTGCGCTC CCTCTGCGGCCATCGTTCGTGGCTGGCCGCGCTTCACCTACCCCGGCGGC CGGCCCGTGATGCTCCTGGCCACTCTTCTTTTTTTCGTCCTTGTCCGGCC GCCCGAGAGCGTCGCCCTCGTGTCCCCACCCGTTTCTCGCGGCCGTCGCC ACCGCCCCGACAAGATTGAGATGCTTGTGCCGCGGTCTTGACGTCCGGCA AGGCGACGTCTCCCTTCATCCCTCTGCTTGAGCCACTGCTGTAGCGTGGA TGTTGGCGGGGTTGTCTTCACTTCACCTCTCTCGTGCTATGATGTGTCGA CCGCTGTTGCGGAACCGGAACGGTAGGGTGGATAACCTCTACACGCTTCA AGCGCAACGGCTGGTTCTAGGCTGCTACTTTTCCCTCGCGTATTTTGGGC GCAGCAGATCTCACCCGAGTTTCGAAGCAAAAAAAGGCACACAACGAAAC AGTGAGGCAAACCCGATCTATGGTCGCCGTTGTCTCACAAGGCCTCGGGA GTAGAACTCAGCAGCGCTCTGCGTCTGTTGATGTTTCTATCCCGTCCGCC ATCCTGAGTAAACCATCATTGTAAGGAATTTAACACACACACCGTGACTG AGTCGCTATGCTTTGTCTCGAGAGGAAGGTGCTTCTTTGGTGTTGTTGAC GCTTTTGTCGCTGAAACGTTGCGCACAACATGTAGATTCGTCAGGCGCGG GAGGTTCAATTTATGAGCCTCTCGTTCCGCCTCCGAGCCCATGTTTTCGA AAAAAACTGCAGGAAGAGTGCGGCCGCCGGTCAAGGTGCGTTGTGTTGCA CAGCTGCTTTTCCTGACGAATTTCGATGGAGAACAGCGCACGTTAGCGTG TGACGCGCGAAATTTGAGGCTCAAGTCTCGCCGGGGGTTTCTCTTACGCG CCTCGTGCGGCCCAGGTGGAGGACGCTGTCCAGTATAGAAAGGGATTGCT TGTACGGTGTAGTGGGTCGCCGAAAACCTTCCCGCGGTGGCTTTTTATGG CCGACTCTCGACTCTGCCCGCCGCACGTCGAACGCCAAGCTTTCCGAAAA AATCGAATGCCAAATTTTACCGCAAATGTTAGTGTCGACGTCGTCCAACA AGGTGCGTTACAAATGGAACGACTCCTTCATCTGCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCACCGCTTTCGCCGCATCTCCCCCGTGGAACT CCCGCAGGCTTTCCTCTACAACTTCCTATCGGCGCTGTCTGCCGTCCTCG GCACCGCAATCATTCTCGCCCTCGGCAGCTCGCTCAGCGACGCCCAGGTC TCGATCGTCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12374:596..3405-

>mRNA_H-canaliculatus_F_contig12374.2021.1 ID=mRNA_H-canaliculatus_F_contig12374.2021.1|Name=mRNA_H-canaliculatus_F_contig12374.2021.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1734bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12374:596..3405- (Hapterophycus canaliculatus Oshoro5f female)
AGCTTCACGGGGCTCCTGGTGGTGATCGACAAGCGCGTGGCGCGCAGCAT
TGGCCTCTCGCACGCCTTCATCTTCGCCTCCGGCGCCCTCCTCACGGCCT
CCCTCCTCCACATCGTCCCCGAGGCCCTCGAGGGGCTCGAGGAAAAGTAC
GACAGCCTCCACGACCTGGGCCTCTACGCCGGCGTGGCCATCCTCGGAGG
CCTGTCCTTCAGCGTCCTCATCCACGCCCTCCTGGAGTCCGGCCACTCTC
ACGGCGAGAGCGGCGGCAGCCACTCCCACGCCCCGGGGGGGGTAGTCACT
GCGGGGGGACCGGCCAACCGGAGCGCCGTTTCTGGGGTTCCGCAGGAGGA
GGAGGACGACGGGGACGACGGGATGATCAAGGCGCCGTCGAACGGCAGCT
TCCTGGGGGAGCTGCCGAAGCGGAGCGGTCTCGACGGACTGGAGGTGGAG
CACGCGGACATGAGTGCGACGCAGCCGCCGACTCCGGCCGGGGAGTGTCC
CAGCACGGGCAACCTGAAATCGCTGATTGCGGCGAGGGAGGGGCGTTCGC
TGCTGGACCTCAGGGGCCTCCAGCCGGTGTGCTGGAACGTGATCGCGGGG
GACCTGGTGCACAACTTCGCCGACGGGGTCACCATCGGGGCGGCGTTCCT
GAGCTGCAGCGCGACCATCGGCTGGACGGTGACGGCGTCCGCGGTCCTGC
ACGAGGTGCCCCACGAGCTGGCTGACTTCATGGCGCTGCTCAACGGGGGC
ATGAGCGTCAAGCAGAGCTTCACGGGGCTCCTGGTGGTGATCGACAAGCG
CGTGGCGCGCAGCATTGGCCTCTCGCACGCCTTCATCTTCGCCTCCGGCG
CCCTCCTCACGGCCTCCCTCCTCCACATCGTCCCCGAGGCCCTCGAGGGG
CTCGAGGAAAAGTACGACAGCCTCCACGACCTGGGCCTCTACGCCGGCGT
GGCCATCCTCGGAGGCCTGTCCTTCAGCGTCCTCATCCACGCCCTCCTGG
AGTCCGGCCACTCTCACGGCGAGAGCGGCGGCAGCCACTCCCACGCCCCG
GGGGGGGTAGTCACTGCGGGGGGACCGGCCAACCGGAGCGCCGTTTCTGG
GGTTCCGCAGGAGGAGGAGGACGACGGGGACGACGGGATGATCAAGGCGC
CGTCGAACGGCAGCTTCCTGGGGGAGCTGCCGAAGCGGAGCGGTCTCGAC
GGACTGGAGGTGGAGCACGCGGACATGAGTGCGACGCAGCCGCCGACTCC
GGCCGGGGAGTGTCCCAGCACGGGCAACCTGAAATCGCTGATTGCGGCGA
GGGAGGGGCGTTCGCTGCTGGACCTCAGGGGCCTCCAGCCGGTGTGCTGG
AACGTGATCGCGGGGGACCTGGTGCACAACTTCGCCGACGGGGTCACCAT
CGGGGCGGCGTTCCTGAGCTGCAGCGCGACCATCGGCTGGACGGTGACGG
CGTCCGCGGTCCTGCACGAGGTGCCCCACGAGCTGGCTGACTTCATGGCG
CTGCTCAACGGGGGCATGAGCGTCAAGCAGGCTTTCCTCTACAACTTCCT
ATCGGCGCTGTCTGCCGTCCTCGGCACCGCAATCATTCTCGCCCTCGGCA
GCTCGCTCAGCGACGCCCAGGTCTCGATCGTCGCTTTCCTCTACAACTTC
CTATCGGCGCTGTCTGCCGTCCTCGGCACCGCAATCATTCTCGCCCTCGG
CAGCTCGCTCAGCGACGCCCAGGTCTCGATCGTC
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