mRNA_H-canaliculatus_F_contig12368.2016.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12368.2016.1
Unique NamemRNA_H-canaliculatus_F_contig12368.2016.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12368.2016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12368contigH-canaliculatus_F_contig12368:688..1260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size573
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12368.2016.1prot_H-canaliculatus_F_contig12368.2016.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12368 723..1085 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928951.6843922-UTR-H-canaliculatus_F_contig12368:687..7221622928951.6843922-UTR-H-canaliculatus_F_contig12368:687..722Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12368 688..722 +
1696845626.8464413-UTR-H-canaliculatus_F_contig12368:687..7221696845626.8464413-UTR-H-canaliculatus_F_contig12368:687..722Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12368 688..722 +
1622928951.7443557-UTR-H-canaliculatus_F_contig12368:1085..12601622928951.7443557-UTR-H-canaliculatus_F_contig12368:1085..1260Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12368 1086..1260 +
1696845626.866637-UTR-H-canaliculatus_F_contig12368:1085..12601696845626.866637-UTR-H-canaliculatus_F_contig12368:1085..1260Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12368 1086..1260 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928951.7041395-CDS-H-canaliculatus_F_contig12368:722..10851622928951.7041395-CDS-H-canaliculatus_F_contig12368:722..1085Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12368 723..1085 +
1696845626.8561413-CDS-H-canaliculatus_F_contig12368:722..10851696845626.8561413-CDS-H-canaliculatus_F_contig12368:722..1085Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12368 723..1085 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12368.2016.1

>prot_H-canaliculatus_F_contig12368.2016.1 ID=prot_H-canaliculatus_F_contig12368.2016.1|Name=mRNA_H-canaliculatus_F_contig12368.2016.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=121bp
MRYQVPGTPYFLLQEEGAAGVKKSEAWLKHVVGAAPVPGGSGCICRCLWR
FVPAHDRSLAVQSTCRLGTLQAQAFSSLVSRSNTRNGHYNCDRGAEQRIA
NLAHDSYVRPRARHSFLRSA*
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mRNA from alignment at H-canaliculatus_F_contig12368:688..1260+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12368.2016.1 ID=mRNA_H-canaliculatus_F_contig12368.2016.1|Name=mRNA_H-canaliculatus_F_contig12368.2016.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=573bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12368:688..1260+ (Hapterophycus canaliculatus Oshoro5f female)
TTTCGTTGCGCGCCTGACTTGTGTCGGTTTATTTCATGCGGTACCAGGTA
CCAGGTACTCCGTATTTTTTATTGCAGGAAGAAGGAGCGGCCGGTGTCAA
GAAATCTGAGGCGTGGCTCAAGCACGTCGTAGGAGCGGCGCCGGTACCAG
GAGGGAGCGGATGTATTTGTAGGTGCTTGTGGCGTTTTGTTCCTGCCCAC
GATCGATCGCTAGCCGTCCAATCCACCTGCCGCTTGGGCACACTGCAGGC
CCAGGCTTTCTCTTCTCTCGTCTCCCGGAGCAACACGCGAAATGGCCATT
ATAATTGTGATCGTGGTGCTGAGCAACGGATCGCGAACCTTGCGCATGAC
TCATACGTTCGCCCTCGAGCCAGACATTCCTTTCTACGGTCGGCGTGAAA
GATCAACAGAAACAGATAAAGGAGATGCATTCCATATTGCGGGGCCCCTT
TCCGGTTGTCTTCCTGGAACGTTGCCCGCTGAGTATATTGGTTGTCGTCC
TCGTACCAGGGAAAGGAAGATCACTCGAACCGAGTAGTACTCCTCACCTC
TTCCACCCCCTCCTCCTCCTCCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12368:688..1260+

>mRNA_H-canaliculatus_F_contig12368.2016.1 ID=mRNA_H-canaliculatus_F_contig12368.2016.1|Name=mRNA_H-canaliculatus_F_contig12368.2016.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=726bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12368:688..1260+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCGGTACCAGGTACCAGGTACTCCGTATTTTTTATTGCAGGAAGAAGG
AGCGGCCGGTGTCAAGAAATCTGAGGCGTGGCTCAAGCACGTCGTAGGAG
CGGCGCCGGTACCAGGAGGGAGCGGATGTATTTGTAGGTGCTTGTGGCGT
TTTGTTCCTGCCCACGATCGATCGCTAGCCGTCCAATCCACCTGCCGCTT
GGGCACACTGCAGGCCCAGGCTTTCTCTTCTCTCGTCTCCCGGAGCAACA
CGCGAAATGGCCATTATAATTGTGATCGTGGTGCTGAGCAACGGATCGCG
AACCTTGCGCATGACTCATACGTTCGCCCTCGAGCCAGACATTCCTTTCT
ACGGTCGGCGTGAATGCGGTACCAGGTACCAGGTACTCCGTATTTTTTAT
TGCAGGAAGAAGGAGCGGCCGGTGTCAAGAAATCTGAGGCGTGGCTCAAG
CACGTCGTAGGAGCGGCGCCGGTACCAGGAGGGAGCGGATGTATTTGTAG
GTGCTTGTGGCGTTTTGTTCCTGCCCACGATCGATCGCTAGCCGTCCAAT
CCACCTGCCGCTTGGGCACACTGCAGGCCCAGGCTTTCTCTTCTCTCGTC
TCCCGGAGCAACACGCGAAATGGCCATTATAATTGTGATCGTGGTGCTGA
GCAACGGATCGCGAACCTTGCGCATGACTCATACGTTCGCCCTCGAGCCA
GACATTCCTTTCTACGGTCGGCGTGA
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