mRNA_H-canaliculatus_F_contig12367.2014.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12367.2014.1
Unique NamemRNA_H-canaliculatus_F_contig12367.2014.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12367.2014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12367contigH-canaliculatus_F_contig12367:3049..3447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size399
Cds size399
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928951.5877688-CDS-H-canaliculatus_F_contig12367:3048..34471622928951.5877688-CDS-H-canaliculatus_F_contig12367:3048..3447Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12367 3049..3447 +
1696845626.817217-CDS-H-canaliculatus_F_contig12367:3048..34471696845626.817217-CDS-H-canaliculatus_F_contig12367:3048..3447Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12367 3049..3447 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12367.2014.1prot_H-canaliculatus_F_contig12367.2014.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12367 3049..3447 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12367.2014.1

>prot_H-canaliculatus_F_contig12367.2014.1 ID=prot_H-canaliculatus_F_contig12367.2014.1|Name=mRNA_H-canaliculatus_F_contig12367.2014.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=133bp
PPNYSSATQQLSQTNRSRSCAYCRRVPPYHTRRASLPPLPSALQRMILPF
AKPGKVLPMSFEKIVSSRGLAEQQCVLVPLNVRAALFSVGRPSNHKPARL
PTHYSYPACLMTVPSAAVCAWCTSLHVHAPPC*
back to top

mRNA from alignment at H-canaliculatus_F_contig12367:3049..3447+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12367.2014.1 ID=mRNA_H-canaliculatus_F_contig12367.2014.1|Name=mRNA_H-canaliculatus_F_contig12367.2014.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=399bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12367:3049..3447+ (Hapterophycus canaliculatus Oshoro5f female)
CCCCCAAACTATTCCTCCGCTACACAACAGCTTTCACAAACCAACCGCAG
CCGCAGTTGTGCTTACTGCAGGAGGGTGCCACCATACCACACGCGTCGCG
CATCTCTCCCTCCCCTCCCCAGCGCACTCCAACGCATGATACTACCGTTC
GCTAAGCCGGGAAAAGTTTTACCCATGTCCTTCGAGAAGATCGTTTCTTC
TCGAGGGCTTGCCGAACAACAATGCGTCCTTGTCCCGCTCAACGTACGCG
CCGCGCTGTTTTCGGTGGGCAGACCATCCAACCACAAACCTGCTCGGTTA
CCCACGCATTACTCGTACCCGGCCTGTTTGATGACGGTGCCGTCCGCCGC
CGTTTGTGCGTGGTGTACGTCCTTGCATGTCCATGCACCGCCGTGTTGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12367:3049..3447+

>mRNA_H-canaliculatus_F_contig12367.2014.1 ID=mRNA_H-canaliculatus_F_contig12367.2014.1|Name=mRNA_H-canaliculatus_F_contig12367.2014.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=798bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12367:3049..3447+ (Hapterophycus canaliculatus Oshoro5f female)
CCCCCAAACTATTCCTCCGCTACACAACAGCTTTCACAAACCAACCGCAG
CCGCAGTTGTGCTTACTGCAGGAGGGTGCCACCATACCACACGCGTCGCG
CATCTCTCCCTCCCCTCCCCAGCGCACTCCAACGCATGATACTACCGTTC
GCTAAGCCGGGAAAAGTTTTACCCATGTCCTTCGAGAAGATCGTTTCTTC
TCGAGGGCTTGCCGAACAACAATGCGTCCTTGTCCCGCTCAACGTACGCG
CCGCGCTGTTTTCGGTGGGCAGACCATCCAACCACAAACCTGCTCGGTTA
CCCACGCATTACTCGTACCCGGCCTGTTTGATGACGGTGCCGTCCGCCGC
CGTTTGTGCGTGGTGTACGTCCTTGCATGTCCATGCACCGCCGTGTTGAC
CCCCAAACTATTCCTCCGCTACACAACAGCTTTCACAAACCAACCGCAGC
CGCAGTTGTGCTTACTGCAGGAGGGTGCCACCATACCACACGCGTCGCGC
ATCTCTCCCTCCCCTCCCCAGCGCACTCCAACGCATGATACTACCGTTCG
CTAAGCCGGGAAAAGTTTTACCCATGTCCTTCGAGAAGATCGTTTCTTCT
CGAGGGCTTGCCGAACAACAATGCGTCCTTGTCCCGCTCAACGTACGCGC
CGCGCTGTTTTCGGTGGGCAGACCATCCAACCACAAACCTGCTCGGTTAC
CCACGCATTACTCGTACCCGGCCTGTTTGATGACGGTGCCGTCCGCCGCC
GTTTGTGCGTGGTGTACGTCCTTGCATGTCCATGCACCGCCGTGTTGA
back to top