mRNA_H-canaliculatus_F_contig12361.2009.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12361.2009.1
Unique NamemRNA_H-canaliculatus_F_contig12361.2009.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12361.2009.1 vs. uniprot
Match: A0A6H5JRS6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS6_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 6.390e-15
Identity = 40/78 (51.28%), Postives = 53/78 (67.95%), Query Frame = 1 
Query:   22 VMRHGMEQCKTDPCVFRKIRDGRVVVILVVHVDDMAVAGEDNEVLELHAVLNEDFTTNNLGKLSLFTG*----DVDAG 243
            ++ +G EQCK DPCVFRK+ D  VV+I+V++VDD+ VAG D +  EL A LN+ F T NLG+   F G     DV+AG
Sbjct:   47 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAG 124
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12361.2009.1 vs. uniprot
Match: A0A6H5K5G1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5G1_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 9.780e-15
Identity = 41/78 (52.56%), Postives = 53/78 (67.95%), Query Frame = 1 
Query:   22 VMRHGMEQCKTDPCVFRKIRDGRVVVILVVHVDDMAVAGEDNEVLELHAVLNEDFTTNNLGKLSLFTG*----DVDAG 243
            ++ +G EQCK DPCVFRK+ D  VV+I+V++VDD+ VAG D +  EL A LN+ F T NLG+   F G     DVDAG
Sbjct:  308 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAG 385
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12361.2009.1 vs. uniprot
Match: A0A6H5KMJ1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMJ1_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.210e-14
Identity = 41/77 (53.25%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:   22 VMRHGMEQCKTDPCVFRKIRDGRVVVILVVHVDDMAVAGEDNEVLELHAVLNEDFTTNNLGKLSLFTG*----DVDA 240
            ++ +G EQCK DPCVFRK+ D  VV+I+V++VDD+ VAG D +  EL A LN+ F TNNLG+   F G     DVDA
Sbjct:  336 LVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTNNLGECQWFDGCAIERDVDA 412
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12361.2009.1 vs. uniprot
Match: A0A6H5JUB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUB8_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.220e-14
Identity = 41/78 (52.56%), Postives = 53/78 (67.95%), Query Frame = 1 
Query:   22 VMRHGMEQCKTDPCVFRKIRDGRVVVILVVHVDDMAVAGEDNEVLELHAVLNEDFTTNNLGKLSLFTG*----DVDAG 243
            ++ +G EQCK DPCVFRK+ D  VV+I+V++VDD+ VAG D +  EL A LN+ F T NLG+   F G     DVDAG
Sbjct:  412 LVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAG 489
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12361.2009.1 vs. uniprot
Match: A0A6H5K164_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K164_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.240e-14
Identity = 41/78 (52.56%), Postives = 53/78 (67.95%), Query Frame = 1 
Query:   22 VMRHGMEQCKTDPCVFRKIRDGRVVVILVVHVDDMAVAGEDNEVLELHAVLNEDFTTNNLGKLSLFTG*----DVDAG 243
            ++ +G EQCK DPCVFRK+ D  VV+I+V++VDD+ VAG D +  EL A LN+ F T NLG+   F G     DVDAG
Sbjct:  538 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAG 615
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12361.2009.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.250e-14
Identity = 41/78 (52.56%), Postives = 53/78 (67.95%), Query Frame = 1 
Query:   22 VMRHGMEQCKTDPCVFRKIRDGRVVVILVVHVDDMAVAGEDNEVLELHAVLNEDFTTNNLGKLSLFTG*----DVDAG 243
            ++ +G EQCK DPCVFRK+ D  VV+I+V++VDD+ VAG D +  EL A LN+ F T NLG+   F G     DVDAG
Sbjct:  494 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAG 571
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12361.2009.1 vs. uniprot
Match: A0A6H5K1V1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1V1_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 3.180e-14
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = 1 
Query:   22 VMRHGMEQCKTDPCVFRKIRDGRVVVILVVHVDDMAVAGEDNEVLELHAVLNEDFTTNNLGKLSLFTG*----DVDAG 243
            ++ +G EQCK DPCVFRK+ D  VV+I+V+HVDD+ VAG D +  EL A  N+ F + NLG+   F G     DVDAG
Sbjct:  473 LVENGFEQCKADPCVFRKMVDEVVVMIIVIHVDDILVAGSDEDCEELLASFNKRFPSKNLGECEWFDGCAIERDVDAG 550
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12361.2009.1 vs. uniprot
Match: A0A6H5JVD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD4_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 3.980e-14
Identity = 40/78 (51.28%), Postives = 53/78 (67.95%), Query Frame = 1 
Query:   22 VMRHGMEQCKTDPCVFRKIRDGRVVVILVVHVDDMAVAGEDNEVLELHAVLNEDFTTNNLGKLSLFTG*----DVDAG 243
            ++ +G EQCK DPCVFRK+ D  VV+I+V++VDD+ VAG D +  EL A LN+ F T NLG+   F G     DV+AG
Sbjct:  126 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAG 203
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12361.2009.1 vs. uniprot
Match: A0A6H5KSR8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSR8_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 3.980e-14
Identity = 40/78 (51.28%), Postives = 53/78 (67.95%), Query Frame = 1 
Query:   22 VMRHGMEQCKTDPCVFRKIRDGRVVVILVVHVDDMAVAGEDNEVLELHAVLNEDFTTNNLGKLSLFTG*----DVDAG 243
            ++ +G EQCK DPCVFRK+ D  VV+I+V++VDD+ VAG D +  EL A LN+ F T NLG+   F G     DV+AG
Sbjct:   70 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAG 147
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12361.2009.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 4.130e-14
Identity = 40/78 (51.28%), Postives = 53/78 (67.95%), Query Frame = 1 
Query:   22 VMRHGMEQCKTDPCVFRKIRDGRVVVILVVHVDDMAVAGEDNEVLELHAVLNEDFTTNNLGKLSLFTG*----DVDAG 243
            ++ +G EQCK DPCVFRK+ D  VV+I+V++VDD+ VAG D +  EL A LN+ F T NLG+   F G     DV+AG
Sbjct:  190 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAG 267
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12361.2009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRS6_9PHAE6.390e-1551.28Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K5G1_9PHAE9.780e-1552.56Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KMJ1_9PHAE1.210e-1453.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JUB8_9PHAE1.220e-1452.56Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K164_9PHAE1.240e-1452.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQN6_9PHAE1.250e-1452.56Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1V1_9PHAE3.180e-1451.28Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JVD4_9PHAE3.980e-1451.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSR8_9PHAE3.980e-1451.28Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KTL3_9PHAE4.130e-1451.28Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12361contigH-canaliculatus_F_contig12361:2070..2341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size272
Cds size204
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12361.2009.1prot_H-canaliculatus_F_contig12361.2009.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12361 2094..2297 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928951.2682378-UTR-H-canaliculatus_F_contig12361:2069..20931622928951.2682378-UTR-H-canaliculatus_F_contig12361:2069..2093Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12361 2070..2093 +
1696845626.6239188-UTR-H-canaliculatus_F_contig12361:2069..20931696845626.6239188-UTR-H-canaliculatus_F_contig12361:2069..2093Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12361 2070..2093 +
1622928951.291257-UTR-H-canaliculatus_F_contig12361:2297..23411622928951.291257-UTR-H-canaliculatus_F_contig12361:2297..2341Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12361 2298..2341 +
1696845626.6433465-UTR-H-canaliculatus_F_contig12361:2297..23411696845626.6433465-UTR-H-canaliculatus_F_contig12361:2297..2341Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12361 2298..2341 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928951.2816112-CDS-H-canaliculatus_F_contig12361:2093..22971622928951.2816112-CDS-H-canaliculatus_F_contig12361:2093..2297Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12361 2094..2297 +
1696845626.63284-CDS-H-canaliculatus_F_contig12361:2093..22971696845626.63284-CDS-H-canaliculatus_F_contig12361:2093..2297Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12361 2094..2297 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12361.2009.1

>prot_H-canaliculatus_F_contig12361.2009.1 ID=prot_H-canaliculatus_F_contig12361.2009.1|Name=mRNA_H-canaliculatus_F_contig12361.2009.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=68bp
MRHGMEQCKTDPCVFRKIRDGRVVVILVVHVDDMAVAGEDNEVLELHAVL
NEDFTTNNLGKLSLFTG*
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mRNA from alignment at H-canaliculatus_F_contig12361:2070..2341+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12361.2009.1 ID=mRNA_H-canaliculatus_F_contig12361.2009.1|Name=mRNA_H-canaliculatus_F_contig12361.2009.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=272bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12361:2070..2341+ (Hapterophycus canaliculatus Oshoro5f female)
GAGCTGCTGGTGCAGAAGTTCGTGATGAGGCACGGCATGGAGCAGTGTAA
GACTGACCCGTGCGTGTTTCGCAAGATTCGGGATGGCAGGGTGGTCGTGA
TCTTAGTCGTGCATGTAGATGACATGGCTGTAGCTGGTGAGGACAATGAG
GTTCTCGAGTTGCACGCGGTCCTCAACGAGGATTTCACGACGAATAACCT
CGGAAAGCTTTCGCTTTTCACGGGTTGAGATGTGGATGCAGGAAAGTCGA
TCACGGATGGATGAGATCTGCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12361:2070..2341+

>mRNA_H-canaliculatus_F_contig12361.2009.1 ID=mRNA_H-canaliculatus_F_contig12361.2009.1|Name=mRNA_H-canaliculatus_F_contig12361.2009.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=408bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12361:2070..2341+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAGGCACGGCATGGAGCAGTGTAAGACTGACCCGTGCGTGTTTCGCAA
GATTCGGGATGGCAGGGTGGTCGTGATCTTAGTCGTGCATGTAGATGACA
TGGCTGTAGCTGGTGAGGACAATGAGGTTCTCGAGTTGCACGCGGTCCTC
AACGAGGATTTCACGACGAATAACCTCGGAAAGCTTTCGCTTTTCACGGG
TTGAATGAGGCACGGCATGGAGCAGTGTAAGACTGACCCGTGCGTGTTTC
GCAAGATTCGGGATGGCAGGGTGGTCGTGATCTTAGTCGTGCATGTAGAT
GACATGGCTGTAGCTGGTGAGGACAATGAGGTTCTCGAGTTGCACGCGGT
CCTCAACGAGGATTTCACGACGAATAACCTCGGAAAGCTTTCGCTTTTCA
CGGGTTGA
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