mRNA_H-canaliculatus_F_contig1234.1997.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1234.1997.1
Unique NamemRNA_H-canaliculatus_F_contig1234.1997.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1234.1997.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1234contigH-canaliculatus_F_contig1234:7416..7739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size324
Cds size309
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928949.6897123-UTR-H-canaliculatus_F_contig1234:7415..74301622928949.6897123-UTR-H-canaliculatus_F_contig1234:7415..7430Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1234 7416..7430 +
1696845625.804442-UTR-H-canaliculatus_F_contig1234:7415..74301696845625.804442-UTR-H-canaliculatus_F_contig1234:7415..7430Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1234 7416..7430 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928949.7028913-CDS-H-canaliculatus_F_contig1234:7430..77391622928949.7028913-CDS-H-canaliculatus_F_contig1234:7430..7739Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1234 7431..7739 +
1696845625.8133967-CDS-H-canaliculatus_F_contig1234:7430..77391696845625.8133967-CDS-H-canaliculatus_F_contig1234:7430..7739Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1234 7431..7739 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1234.1997.1prot_H-canaliculatus_F_contig1234.1997.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1234 7431..7739 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1234.1997.1

>prot_H-canaliculatus_F_contig1234.1997.1 ID=prot_H-canaliculatus_F_contig1234.1997.1|Name=mRNA_H-canaliculatus_F_contig1234.1997.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=103bp
MSLGVQLIWKCASDAPPGTGERESAGLSKRNRGQGLMAGCQRLSDKPFLC
ACACIRDADDNVAQQPFVLQQQKLTTTTTTTIATNNKKFHASTLTSSVGP
KR*
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mRNA from alignment at H-canaliculatus_F_contig1234:7416..7739+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1234.1997.1 ID=mRNA_H-canaliculatus_F_contig1234.1997.1|Name=mRNA_H-canaliculatus_F_contig1234.1997.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=324bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1234:7416..7739+ (Hapterophycus canaliculatus Oshoro5f female)
GGCGAGGCGGGGTGGATGAGTCTTGGCGTGCAGTTGATCTGGAAATGCGC
GTCCGACGCACCACCAGGGACAGGAGAGAGAGAGTCGGCAGGTCTTTCGA
AACGTAACCGCGGACAGGGTTTGATGGCCGGCTGCCAACGCCTCAGCGAC
AAACCCTTTTTGTGCGCATGTGCGTGCATACGAGATGCCGACGACAACGT
CGCACAACAGCCTTTTGTGCTGCAGCAGCAAAAATTGACGACGACGACGA
CGACGACCATAGCGACCAACAACAAAAAATTTCACGCATCAACCCTCACC
TCCTCGGTAGGCCCGAAGCGGTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1234:7416..7739+

>mRNA_H-canaliculatus_F_contig1234.1997.1 ID=mRNA_H-canaliculatus_F_contig1234.1997.1|Name=mRNA_H-canaliculatus_F_contig1234.1997.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=618bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1234:7416..7739+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAGTCTTGGCGTGCAGTTGATCTGGAAATGCGCGTCCGACGCACCACC
AGGGACAGGAGAGAGAGAGTCGGCAGGTCTTTCGAAACGTAACCGCGGAC
AGGGTTTGATGGCCGGCTGCCAACGCCTCAGCGACAAACCCTTTTTGTGC
GCATGTGCGTGCATACGAGATGCCGACGACAACGTCGCACAACAGCCTTT
TGTGCTGCAGCAGCAAAAATTGACGACGACGACGACGACGACCATAGCGA
CCAACAACAAAAAATTTCACGCATCAACCCTCACCTCCTCGGTAGGCCCG
AAGCGGTAAATGAGTCTTGGCGTGCAGTTGATCTGGAAATGCGCGTCCGA
CGCACCACCAGGGACAGGAGAGAGAGAGTCGGCAGGTCTTTCGAAACGTA
ACCGCGGACAGGGTTTGATGGCCGGCTGCCAACGCCTCAGCGACAAACCC
TTTTTGTGCGCATGTGCGTGCATACGAGATGCCGACGACAACGTCGCACA
ACAGCCTTTTGTGCTGCAGCAGCAAAAATTGACGACGACGACGACGACGA
CCATAGCGACCAACAACAAAAAATTTCACGCATCAACCCTCACCTCCTCG
GTAGGCCCGAAGCGGTAA
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