mRNA_H-canaliculatus_F_contig12332.1992.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12332.1992.1
Unique NamemRNA_H-canaliculatus_F_contig12332.1992.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12332.1992.1 vs. uniprot
Match: D7FYE6_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYE6_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 1.510e-9
Identity = 25/39 (64.10%), Postives = 31/39 (79.49%), Query Frame = -2 
Query:  464 ECAVCKDDFEAGDKARELPCQHAFHEHW*TKTRADERNQ 580
            ECAVCKD+F AGDKARELPCQH+FHE W  + +  ++ Q
Sbjct:   48 ECAVCKDEFAAGDKARELPCQHSFHEQWWWRRQLGQQGQ 86
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BLAST of mRNA_H-canaliculatus_F_contig12332.1992.1 vs. uniprot
Match: A0A6H5JIQ8_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIQ8_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 6.510e-6
Identity = 22/26 (84.62%), Postives = 25/26 (96.15%), Query Frame = -2 
Query:  503 ECAVCKDDFEAGDKARELPCQHAFHE 580
            ECAVCKD+F AG+KARELPCQH+FHE
Sbjct:  406 ECAVCKDEFAAGEKARELPCQHSFHE 431
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BLAST of mRNA_H-canaliculatus_F_contig12332.1992.1 vs. uniprot
Match: A0A6G1C942_9ORYZ (RING-type domain-containing protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1C942_9ORYZ)

HSP 1 Score: 50.4 bits (119), Expect = 4.780e-5
Identity = 19/26 (73.08%), Postives = 21/26 (80.77%), Query Frame = -2 
Query:  503 ECAVCKDDFEAGDKARELPCQHAFHE 580
            ECAVC +DFEAGDK R +PC H FHE
Sbjct:   45 ECAVCMEDFEAGDKLRAMPCSHCFHE 70
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12332.1992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FYE6_ECTSI1.510e-964.10RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JIQ8_9PHAE6.510e-684.62RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6G1C942_9ORYZ4.780e-573.08RING-type domain-containing protein n=1 Tax=Oryza ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12332contigH-canaliculatus_F_contig12332:2957..3537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size581
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12332.1992.1prot_H-canaliculatus_F_contig12332.1992.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12332 3011..3370 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928949.3636992-UTR-H-canaliculatus_F_contig12332:2956..30101622928949.3636992-UTR-H-canaliculatus_F_contig12332:2956..3010Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12332 2957..3010 +
1696845625.6859372-UTR-H-canaliculatus_F_contig12332:2956..30101696845625.6859372-UTR-H-canaliculatus_F_contig12332:2956..3010Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12332 2957..3010 +
1622928949.3951285-UTR-H-canaliculatus_F_contig12332:3370..35371622928949.3951285-UTR-H-canaliculatus_F_contig12332:3370..3537Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12332 3371..3537 +
1696845625.7045708-UTR-H-canaliculatus_F_contig12332:3370..35371696845625.7045708-UTR-H-canaliculatus_F_contig12332:3370..3537Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12332 3371..3537 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928949.3815312-CDS-H-canaliculatus_F_contig12332:3010..33701622928949.3815312-CDS-H-canaliculatus_F_contig12332:3010..3370Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12332 3011..3370 +
1696845625.6954145-CDS-H-canaliculatus_F_contig12332:3010..33701696845625.6954145-CDS-H-canaliculatus_F_contig12332:3010..3370Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12332 3011..3370 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12332.1992.1

>prot_H-canaliculatus_F_contig12332.1992.1 ID=prot_H-canaliculatus_F_contig12332.1992.1|Name=mRNA_H-canaliculatus_F_contig12332.1992.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=120bp
MLLYPVNGGGGGARRSRAHLGRFHDPLTDTETQASSFLPNARILTPPAST
PSRRLRPNGRTLSSGPRSLPLSLFQVSSLSFSERGCRLPLAFPFTSDPVF
PFPLLGKMSTTNAAIKNNR*
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mRNA from alignment at H-canaliculatus_F_contig12332:2957..3537+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12332.1992.1 ID=mRNA_H-canaliculatus_F_contig12332.1992.1|Name=mRNA_H-canaliculatus_F_contig12332.1992.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=581bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12332:2957..3537+ (Hapterophycus canaliculatus Oshoro5f female)
AAAAGAAACAAATCAGGGACAAGCAGACCGCCCCACAAAGGCACGCTACT
GCCGATGCTGCTGTATCCTGTGAACGGGGGGGGGGGGGGGGCGCGGAGGA
GCCGGGCGCACCTCGGCCGTTTTCACGACCCCCTCACCGACACAGAGACA
CAAGCATCTTCCTTCCTCCCCAACGCACGCATACTTACCCCCCCCGCCTC
GACCCCCTCCAGGCGTCTCCGGCCAAACGGAAGGACACTGTCTTCCGGAC
CTCGTTCTCTCCCTCTCTCTCTCTTTCAAGTCTCTTCCCTCTCTTTCTCT
GAACGTGGTTGCCGTCTCCCTCTCGCGTTTCCCTTCACTTCTGACCCCGT
TTTCCCCTTCCCCCTCCTCGGCAAAATGTCGACGACGAATGCTGCGATAA
AAAATAATCGGTAGTGCGGTACACGCCACGAGCCAGGCGAGACTAAAAGG
TCCATCCGGATCACTGATTTCGCTCGTCTGCTCGTGTTTTTGTTCACCAG
TGCTCGTGGAAGGCGTGTTGGCAGGGAAGCTCTCGAGCCTTGTCTCCCGC
CTCGAAGTCGTCCTTGCACACGGCACACTCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12332:2957..3537+

>mRNA_H-canaliculatus_F_contig12332.1992.1 ID=mRNA_H-canaliculatus_F_contig12332.1992.1|Name=mRNA_H-canaliculatus_F_contig12332.1992.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=720bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12332:2957..3537+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTGCTGTATCCTGTGAACGGGGGGGGGGGGGGGGCGCGGAGGAGCCG
GGCGCACCTCGGCCGTTTTCACGACCCCCTCACCGACACAGAGACACAAG
CATCTTCCTTCCTCCCCAACGCACGCATACTTACCCCCCCCGCCTCGACC
CCCTCCAGGCGTCTCCGGCCAAACGGAAGGACACTGTCTTCCGGACCTCG
TTCTCTCCCTCTCTCTCTCTTTCAAGTCTCTTCCCTCTCTTTCTCTGAAC
GTGGTTGCCGTCTCCCTCTCGCGTTTCCCTTCACTTCTGACCCCGTTTTC
CCCTTCCCCCTCCTCGGCAAAATGTCGACGACGAATGCTGCGATAAAAAA
TAATCGGTAGATGCTGCTGTATCCTGTGAACGGGGGGGGGGGGGGGGCGC
GGAGGAGCCGGGCGCACCTCGGCCGTTTTCACGACCCCCTCACCGACACA
GAGACACAAGCATCTTCCTTCCTCCCCAACGCACGCATACTTACCCCCCC
CGCCTCGACCCCCTCCAGGCGTCTCCGGCCAAACGGAAGGACACTGTCTT
CCGGACCTCGTTCTCTCCCTCTCTCTCTCTTTCAAGTCTCTTCCCTCTCT
TTCTCTGAACGTGGTTGCCGTCTCCCTCTCGCGTTTCCCTTCACTTCTGA
CCCCGTTTTCCCCTTCCCCCTCCTCGGCAAAATGTCGACGACGAATGCTG
CGATAAAAAATAATCGGTAG
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