mRNA_H-canaliculatus_F_contig12332.1991.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12332.1991.1
Unique NamemRNA_H-canaliculatus_F_contig12332.1991.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12332.1991.1 vs. uniprot
Match: A0A6H5JIQ8_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIQ8_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 4.320e-26
Identity = 48/56 (85.71%), Postives = 53/56 (94.64%), Query Frame = 1 
Query:    1 GAPLEGQECAVCKDDFEAGDKARELPCQHAFHEHCILPWLAERNTCPTCRHELPTD 168
            G+ LEGQECAVCKD+F AG+KARELPCQH+FHE CILPW+AERNTCPTCRHELPTD
Sbjct:  399 GSELEGQECAVCKDEFAAGEKARELPCQHSFHEQCILPWVAERNTCPTCRHELPTD 454
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BLAST of mRNA_H-canaliculatus_F_contig12332.1991.1 vs. uniprot
Match: D8T3I3_SELML (RING-type domain-containing protein (Fragment) n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8T3I3_SELML)

HSP 1 Score: 90.5 bits (223), Expect = 2.930e-19
Identity = 32/52 (61.54%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:   13 EGQECAVCKDDFEAGDKARELPCQHAFHEHCILPWLAERNTCPTCRHELPTD 168
            +G +CAVCKD+FE G + R++PC+H +H  CILPWLA+ N+CP CRHE+PTD
Sbjct:   41 DGGQCAVCKDEFELGSEVRQMPCKHLYHGDCILPWLAQHNSCPVCRHEMPTD 92
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BLAST of mRNA_H-canaliculatus_F_contig12332.1991.1 vs. uniprot
Match: A0A7J9KW46_GOSSC (RING-type domain-containing protein (Fragment) n=1 Tax=Gossypium schwendimanii TaxID=34291 RepID=A0A7J9KW46_GOSSC)

HSP 1 Score: 89.0 bits (219), Expect = 3.480e-18
Identity = 33/48 (68.75%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:   25 CAVCKDDFEAGDKARELPCQHAFHEHCILPWLAERNTCPTCRHELPTD 168
            CAVCK+ FE G +ARE+PC+H +HE CI+PWLA RN+CP CRHELP+D
Sbjct:   68 CAVCKEPFELGSEAREMPCKHIYHEDCIIPWLALRNSCPLCRHELPSD 115
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BLAST of mRNA_H-canaliculatus_F_contig12332.1991.1 vs. uniprot
Match: A0A3B6NTF2_WHEAT (RING-type domain-containing protein n=4 Tax=Triticum TaxID=4564 RepID=A0A3B6NTF2_WHEAT)

HSP 1 Score: 92.4 bits (228), Expect = 5.400e-18
Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:   16 GQECAVCKDDFEAGDKARELPCQHAFHEHCILPWLAERNTCPTCRHELPTD 168
            G +CAVCKD  EAG+ AR LPC H +H+ CILPWLA RNTCP CRHELPTD
Sbjct:  228 GAQCAVCKDGIEAGEGARRLPCAHLYHDACILPWLAIRNTCPLCRHELPTD 278
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BLAST of mRNA_H-canaliculatus_F_contig12332.1991.1 vs. uniprot
Match: I1IEA5_BRADI (RING-type domain-containing protein n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=I1IEA5_BRADI)

HSP 1 Score: 92.4 bits (228), Expect = 5.800e-18
Identity = 38/51 (74.51%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:   16 GQECAVCKDDFEAGDKARELPCQHAFHEHCILPWLAERNTCPTCRHELPTD 168
            G +CAVCKD  EAGD AR LPC H +H  CILPWLA RNTCP CRHELPTD
Sbjct:  221 GAQCAVCKDGIEAGDGARRLPCAHLYHGGCILPWLAIRNTCPLCRHELPTD 271
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BLAST of mRNA_H-canaliculatus_F_contig12332.1991.1 vs. uniprot
Match: F2D772_HORVV (Predicted protein n=2 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=F2D772_HORVV)

HSP 1 Score: 92.4 bits (228), Expect = 5.960e-18
Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:   16 GQECAVCKDDFEAGDKARELPCQHAFHEHCILPWLAERNTCPTCRHELPTD 168
            G +CAVCKD  EAG+ AR LPC H +H+ CILPWLA RNTCP CRHELPTD
Sbjct:  232 GAQCAVCKDGIEAGEGARRLPCAHLYHDACILPWLAIRNTCPLCRHELPTD 282
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12332.1991.1 vs. uniprot
Match: A0A0E0DKZ8_9ORYZ (RING-type E3 ubiquitin transferase n=2 Tax=Oryzeae TaxID=147380 RepID=A0A0E0DKZ8_9ORYZ)

HSP 1 Score: 93.2 bits (230), Expect = 7.430e-18
Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:   25 CAVCKDDFEAGDKARELPCQHAFHEHCILPWLAERNTCPTCRHELPTD 168
            CAVCKD FE GD+ARE+PC H +H+ CILPWLA RN+CP CRHE+PTD
Sbjct:  201 CAVCKDPFELGDEAREMPCSHIYHQDCILPWLALRNSCPVCRHEMPTD 248
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BLAST of mRNA_H-canaliculatus_F_contig12332.1991.1 vs. uniprot
Match: A0A0D9YXQ2_9ORYZ (RING-type domain-containing protein n=10 Tax=Oryza TaxID=4527 RepID=A0A0D9YXQ2_9ORYZ)

HSP 1 Score: 92.0 bits (227), Expect = 7.770e-18
Identity = 36/49 (73.47%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:   22 ECAVCKDDFEAGDKARELPCQHAFHEHCILPWLAERNTCPTCRHELPTD 168
            +CAVCKD  EAG++AR LPC H +H+ CILPWLA RNTCP CRHELPTD
Sbjct:  229 QCAVCKDGMEAGERARRLPCAHLYHDGCILPWLAIRNTCPLCRHELPTD 277
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12332.1991.1 vs. uniprot
Match: A0A5J9UXH9_9POAL (RING-type domain-containing protein (Fragment) n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9UXH9_9POAL)

HSP 1 Score: 91.7 bits (226), Expect = 1.100e-17
Identity = 36/49 (73.47%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:   22 ECAVCKDDFEAGDKARELPCQHAFHEHCILPWLAERNTCPTCRHELPTD 168
            +CAVCKD  EAG++AR LPC H +H+ CILPWLA RNTCP CRHELPTD
Sbjct:  224 QCAVCKDGVEAGERARRLPCAHLYHDGCILPWLAIRNTCPLCRHELPTD 272
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12332.1991.1 vs. uniprot
Match: A0A6G1DX55_9ORYZ (RING-type domain-containing protein n=2 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1DX55_9ORYZ)

HSP 1 Score: 92.0 bits (227), Expect = 1.100e-17
Identity = 36/49 (73.47%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:   22 ECAVCKDDFEAGDKARELPCQHAFHEHCILPWLAERNTCPTCRHELPTD 168
            +CAVCKD  EAG++AR LPC H +H+ CILPWLA RNTCP CRHELPTD
Sbjct:  234 QCAVCKDGIEAGERARRLPCAHLYHDGCILPWLAIRNTCPLCRHELPTD 282
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12332.1991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIQ8_9PHAE4.320e-2685.71RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8T3I3_SELML2.930e-1961.54RING-type domain-containing protein (Fragment) n=3... [more]
A0A7J9KW46_GOSSC3.480e-1868.75RING-type domain-containing protein (Fragment) n=1... [more]
A0A3B6NTF2_WHEAT5.400e-1872.55RING-type domain-containing protein n=4 Tax=Tritic... [more]
I1IEA5_BRADI5.800e-1874.51RING-type domain-containing protein n=1 Tax=Brachy... [more]
F2D772_HORVV5.960e-1872.55Predicted protein n=2 Tax=Hordeum vulgare subsp. v... [more]
A0A0E0DKZ8_9ORYZ7.430e-1872.92RING-type E3 ubiquitin transferase n=2 Tax=Oryzeae... [more]
A0A0D9YXQ2_9ORYZ7.770e-1873.47RING-type domain-containing protein n=10 Tax=Oryza... [more]
A0A5J9UXH9_9POAL1.100e-1773.47RING-type domain-containing protein (Fragment) n=1... [more]
A0A6G1DX55_9ORYZ1.100e-1773.47RING-type domain-containing protein n=2 Tax=Oryza ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12332contigH-canaliculatus_F_contig12332:1965..3557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score92.0
Seed ortholog evalue3.2e-16
Seed eggNOG ortholog15368.BRADI3G56300.1
EggNOG free text desc.Ring finger domain
EggNOG OGs37R34@33090,3GH4P@35493,3I639@38820,3KMU4@4447,KOG0800@1,KOG0800@2759
COG Functional cat.O
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_003750.1
Exons2
Model size908
Cds size588
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12332.1991.1prot_H-canaliculatus_F_contig12332.1991.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12332 2283..3557 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928949.4402597-UTR-H-canaliculatus_F_contig12332:1964..22821622928949.4402597-UTR-H-canaliculatus_F_contig12332:1964..2282Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12332 1965..2282 -
1696845625.718001-UTR-H-canaliculatus_F_contig12332:1964..22821696845625.718001-UTR-H-canaliculatus_F_contig12332:1964..2282Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12332 1965..2282 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928949.4538457-CDS-H-canaliculatus_F_contig12332:2282..27661622928949.4538457-CDS-H-canaliculatus_F_contig12332:2282..2766Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12332 2283..2766 -
1696845625.7296956-CDS-H-canaliculatus_F_contig12332:2282..27661696845625.7296956-CDS-H-canaliculatus_F_contig12332:2282..2766Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12332 2283..2766 -
1622928949.4701-CDS-H-canaliculatus_F_contig12332:3453..35571622928949.4701-CDS-H-canaliculatus_F_contig12332:3453..3557Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12332 3454..3557 -
1696845625.7426844-CDS-H-canaliculatus_F_contig12332:3453..35571696845625.7426844-CDS-H-canaliculatus_F_contig12332:3453..3557Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12332 3454..3557 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12332.1991.1

>prot_H-canaliculatus_F_contig12332.1991.1 ID=prot_H-canaliculatus_F_contig12332.1991.1|Name=mRNA_H-canaliculatus_F_contig12332.1991.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=196bp
GAPLEGQECAVCKDDFEAGDKARELPCQHAFHEHCILPWLAERNTCPTCR
HELPTDDDDAGGGGGGDNSNNNSSNDGSNNDGRSSEVPYSRDVDDFSAAY
AGNDGGRGGGGGGEREDAAATGNDYSGGGHSRRSSSSRSADATATATSLS
TSSSSRSSTRRFRGSGGNDGSGGGNSGGTGGDQTRSGVSSTPDAR*
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mRNA from alignment at H-canaliculatus_F_contig12332:1965..3557-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12332.1991.1 ID=mRNA_H-canaliculatus_F_contig12332.1991.1|Name=mRNA_H-canaliculatus_F_contig12332.1991.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1593bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12332:1965..3557- (Hapterophycus canaliculatus Oshoro5f female)
GGAGCGCCGCTGGAAGGGCAAGAGTGTGCCGTGTGCAAGGACGACTTCGA
GGCGGGAGACAAGGCTCGAGAGCTTCCCTGCCAACACGCCTTCCACGAGC
ACTGGTGAACAAAAACACGAGCAGACGAGCGAAATCAGTGATCCGGATGG
ACCTTTTAGTCTCGCCTGGCTCGTGGCGTGTACCGCACTACCGATTATTT
TTTATCGCAGCATTCGTCGTCGACATTTTGCCGAGGAGGGGGAAGGGGAA
AACGGGGTCAGAAGTGAAGGGAAACGCGAGAGGGAGACGGCAACCACGTT
CAGAGAAAGAGAGGGAAGAGACTTGAAAGAGAGAGAGAGGGAGAGAACGA
GGTCCGGAAGACAGTGTCCTTCCGTTTGGCCGGAGACGCCTGGAGGGGGT
CGAGGCGGGGGGGGTAAGTATGCGTGCGTTGGGGAGGAAGGAAGATGCTT
GTGTCTCTGTGTCGGTGAGGGGGTCGTGAAAACGGCCGAGGTGCGCCCGG
CTCCTCCGCGCCCCCCCCCCCCCCCCGTTCACAGGATACAGCAGCATCGG
CAGTAGCGTGCCTTTGTGGGGCGGTCTGCTTGTCCCTGATTTGTTTCTTT
TCCCAGCCGGTGTTTCGTGATGCGAAGGCGAGCGATGAACCGACACGCAC
GCCTGTTCATTAACCCTTCGAAGACCTCCCCTCCCCCTTCATGTTTTTGT
TTCTTGAAACATCCACCACCATCATCAACGACAACATCATCGACGACAAC
ATCATCGACGACAACATCATCTACGACGACAACAACAACAGCATCCTTCC
GTGGCTAGCGGAGCGCAATACGTGCCCCACCTGCCGTCACGAGCTTCCTA
CCGATGACGACGACGCCGGCGGCGGCGGCGGCGGTGACAACAGCAACAAC
AACAGCAGCAACGATGGCAGCAACAATGACGGCCGCAGTAGTGAGGTACC
GTACAGCCGTGATGTAGACGACTTCTCCGCAGCCTACGCGGGCAACGACG
GCGGCCGCGGCGGTGGAGGCGGCGGTGAAAGAGAGGACGCCGCTGCCACA
GGAAACGATTACAGCGGCGGTGGCCACAGCCGGCGCAGCAGCAGCAGCAG
GAGCGCCGACGCGACCGCGACCGCGACGTCGCTCTCGACCTCTTCTTCCT
CGCGGTCGTCAACCAGACGGTTTCGGGGCAGCGGCGGCAACGACGGGAGC
GGCGGCGGCAACAGCGGCGGCACCGGCGGCGACCAGACGAGGAGCGGCGT
GTCTTCGACCCCGGATGCGAGATGAGATCCGTCAAAAACGAAGGACGCAA
GCACCAAGGTCCCTTTTTGGCCTCGGCGTTTGCGTTGGCGTTGGCGTTGA
CCTTGTTCCTGCCCATCCAAGGTCCGGCGTCGCCCGTCGTCGTGCCCGTC
TATGTGGAGGTTTCGGCCATCGACAAGCGATTTGCAGGGAGTGGCGGGGG
CTCCGCGCGCTCACTCGTTGACTCAGGATGTGTCTGTGGGTGTCGCCTCC
CGCCTCCTGTGTATTTGACGAAAGCACGTGGACGTACATCGTAAACGTTG
ATGTAAACTTTTTCTGTATTTTTCTAGATGTTGGCCTCTGCCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12332:1965..3557-

>mRNA_H-canaliculatus_F_contig12332.1991.1 ID=mRNA_H-canaliculatus_F_contig12332.1991.1|Name=mRNA_H-canaliculatus_F_contig12332.1991.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1176bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12332:1965..3557- (Hapterophycus canaliculatus Oshoro5f female)
GGAGCGCCGCTGGAAGGGCAAGAGTGTGCCGTGTGCAAGGACGACTTCGA
GGCGGGAGACAAGGCTCGAGAGCTTCCCTGCCAACACGCCTTCCACGAGC
ACTGGGAGCGCCGCTGGAAGGGCAAGAGTGTGCCGTGTGCAAGGACGACT
TCGAGGCGGGAGACAAGGCTCGAGAGCTTCCCTGCCAACACGCCTTCCAC
GAGCACTGCATCCTTCCGTGGCTAGCGGAGCGCAATACGTGCCCCACCTG
CCGTCACGAGCTTCCTACCGATGACGACGACGCCGGCGGCGGCGGCGGCG
GTGACAACAGCAACAACAACAGCAGCAACGATGGCAGCAACAATGACGGC
CGCAGTAGTGAGGTACCGTACAGCCGTGATGTAGACGACTTCTCCGCAGC
CTACGCGGGCAACGACGGCGGCCGCGGCGGTGGAGGCGGCGGTGAAAGAG
AGGACGCCGCTGCCACAGGAAACGATTACAGCGGCGGTGGCCACAGCCGG
CGCAGCAGCAGCAGCAGGAGCGCCGACGCGACCGCGACCGCGACGTCGCT
CTCGACCTCTTCTTCCTCGCGGTCGTCAACCAGACGGTTTCGGGGCAGCG
GCGGCAACGACGGGAGCGGCGGCGGCAACAGCGGCGGCACCGGCGGCGAC
CAGACGAGGAGCGGCGTGTCTTCGACCCCGGATGCGAGATGACATCCTTC
CGTGGCTAGCGGAGCGCAATACGTGCCCCACCTGCCGTCACGAGCTTCCT
ACCGATGACGACGACGCCGGCGGCGGCGGCGGCGGTGACAACAGCAACAA
CAACAGCAGCAACGATGGCAGCAACAATGACGGCCGCAGTAGTGAGGTAC
CGTACAGCCGTGATGTAGACGACTTCTCCGCAGCCTACGCGGGCAACGAC
GGCGGCCGCGGCGGTGGAGGCGGCGGTGAAAGAGAGGACGCCGCTGCCAC
AGGAAACGATTACAGCGGCGGTGGCCACAGCCGGCGCAGCAGCAGCAGCA
GGAGCGCCGACGCGACCGCGACCGCGACGTCGCTCTCGACCTCTTCTTCC
TCGCGGTCGTCAACCAGACGGTTTCGGGGCAGCGGCGGCAACGACGGGAG
CGGCGGCGGCAACAGCGGCGGCACCGGCGGCGACCAGACGAGGAGCGGCG
TGTCTTCGACCCCGGATGCGAGATGA
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