mRNA_H-canaliculatus_F_contig12316.1983.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12316.1983.1
Unique NamemRNA_H-canaliculatus_F_contig12316.1983.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12316.1983.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12316contigH-canaliculatus_F_contig12316:538..2037 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size345
Cds size345
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12316.1983.1prot_H-canaliculatus_F_contig12316.1983.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12316 538..2037 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928948.4122748-CDS-H-canaliculatus_F_contig12316:537..5701622928948.4122748-CDS-H-canaliculatus_F_contig12316:537..570Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12316 538..570 -
1696845625.290394-CDS-H-canaliculatus_F_contig12316:537..5701696845625.290394-CDS-H-canaliculatus_F_contig12316:537..570Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12316 538..570 -
1622928948.4251-CDS-H-canaliculatus_F_contig12316:1434..16951622928948.4251-CDS-H-canaliculatus_F_contig12316:1434..1695Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12316 1435..1695 -
1696845625.3009377-CDS-H-canaliculatus_F_contig12316:1434..16951696845625.3009377-CDS-H-canaliculatus_F_contig12316:1434..1695Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12316 1435..1695 -
1622928948.4377542-CDS-H-canaliculatus_F_contig12316:1986..20371622928948.4377542-CDS-H-canaliculatus_F_contig12316:1986..2037Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12316 1987..2037 -
1696845625.3100638-CDS-H-canaliculatus_F_contig12316:1986..20371696845625.3100638-CDS-H-canaliculatus_F_contig12316:1986..2037Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12316 1987..2037 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12316.1983.1

>prot_H-canaliculatus_F_contig12316.1983.1 ID=prot_H-canaliculatus_F_contig12316.1983.1|Name=mRNA_H-canaliculatus_F_contig12316.1983.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=115bp
PDSVESLGPQISCRDAKDGRMVASTTTSISAGIQRFVVQPLLLLSSPAVA
YSALLSVATAGLPPVAGVSLIAAGVVSVGLPFFLPRDDGGGESDGASIPP
ATDETTMQATEASPA
back to top

mRNA from alignment at H-canaliculatus_F_contig12316:538..2037-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12316.1983.1 ID=mRNA_H-canaliculatus_F_contig12316.1983.1|Name=mRNA_H-canaliculatus_F_contig12316.1983.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1500bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12316:538..2037- (Hapterophycus canaliculatus Oshoro5f female)
CCGGATTCCGTCGAGTCCCTGGGTCCCCAAATTTCGTGCAGGGACGCGAA
GGTGCGTGTTCGCATGGATACGGCAGGAGATTGGTGTGAGCCTTTGTGGG
TCGTCCGTACCGTGAGAACAGTTGGTCCTAGCTCAATAGCTTAAGACTCT
TATGCTTTTATCATGTGTCAGCGGACGTAGAGGTGTAGGATGTGAAAGGT
GTCGAAAACCTGTACGAGCCCCTTTGGAAGTTACCTAAAACGTTCTCCTT
CCTTCTCGCCGTGCGCGCTCGCGCCCTCTGCCGACCACCCTCTGCCCACC
GCTCGCCGCTGCCTGCACTCGCGGCACCCGTGGCGGCTGCAGGACGGGCG
CATGGTGGCATCGACCACGACATCTATATCCGCAGGTATCCAACGGTTCG
TGGTTCAGCCGTTGCTCTTGCTGAGCAGTCCAGCCGTCGCCTACTCCGCA
TTGCTGTCGGTGGCCACGGCTGGCCTGCCGCCCGTCGCTGGCGTTTCGCT
GATCGCGGCCGGCGTTGTTTCGGTCGGATTGCCATTTTTTCTTCCCCGTG
ATGATGGTGGTGGAGAATCGGACGGTGCTAGCATACCACCAGCGACAGAT
GAGGTGAGCATGTTCAAGAGCGAGTTCTTGTGCTTCACACGACGTTGTTT
TGTGCTCGCAGAGCGCTCGCCTCGCGGTCAGATGAAGGGGATTAGCGCTT
AGAGTTCCGGAGCGAAGTGACCATTTGTCTTACACGTGTTCCTGACTGCC
CGCACACAACATGGGCGGAGAATCACATGGCCTTTTCCGTGCTCTCGTCT
CACATTCCCCTTCTTAGCGTCTCTCCCCCGCCGCGCGAGTTCGGCCAAGA
GTAAAATACAATTGGCTTTCCCTCTGAAGGGACTTACTTTGGAAGAGCAT
CTCCCCTCCAGCAAAGGGATCCACCCGGGTTGTCATTTTTAGGATGCAAT
CCCCGTGAGTGTGTATTTTCCACGACAATCTTTTGGCGAATTTGGCCTGA
GCTGAAATCAAGAGTGCCGGGTCTTGTGACCGAAAGCGCCGTTGCCTTTG
GGCGCTTTTCAAGGACGTTTACAATCATCAAATATTGTGCGGGTTCCAGT
TCATTATCCATCAGCGGCGCGTGCTGCGGGCTGTTGCTCGCAATGTAGAG
TCAGAGGTGCTGCTGTCGGGTAGTCTTGAGTTGCGCAGCGCATGGAGACC
AAACCAGTATACCAAGTACGCGCTGTTGTTCTGCTTGAGGTTTGTTTTGA
GCTTTCCCCCTGAGGTACCGTGTTTGAAAAGGAGCAAGGTGACAGGATTT
CCCTCCGGAGGTTCCGACGCTACTAGGGTTATGGCTTTCCCGCAGATGCT
ACGATGGTACGAGAAAGTGTACACGGTAGATCCGAATCAATCCTTGCCAA
GCAGGAGAAGGGAAAAGCCGCCAATGCCTGAATCCTGCCCGTCGCCCCCC
CTTGAACCGTTGAAAAGACAACGATGCAGGCCACCGAAGCCTCTCCAGCC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12316:538..2037-

>mRNA_H-canaliculatus_F_contig12316.1983.1 ID=mRNA_H-canaliculatus_F_contig12316.1983.1|Name=mRNA_H-canaliculatus_F_contig12316.1983.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=690bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12316:538..2037- (Hapterophycus canaliculatus Oshoro5f female)
CCGGATTCCGTCGAGTCCCTGGGTCCCCAAATTTCGTGCAGGGACGCGAA
GCCGGATTCCGTCGAGTCCCTGGGTCCCCAAATTTCGTGCAGGGACGCGA
AGGACGGGCGCATGGTGGCATCGACCACGACATCTATATCCGCAGGTATC
CAACGGTTCGTGGTTCAGCCGTTGCTCTTGCTGAGCAGTCCAGCCGTCGC
CTACTCCGCATTGCTGTCGGTGGCCACGGCTGGCCTGCCGCCCGTCGCTG
GCGTTTCGCTGATCGCGGCCGGCGTTGTTTCGGTCGGATTGCCATTTTTT
CTTCCCCGTGATGATGGTGGTGGAGAATCGGACGGTGCTAGCATACCACC
AGCGACAGATGAGGACGGGCGCATGGTGGCATCGACCACGACATCTATAT
CCGCAGGTATCCAACGGTTCGTGGTTCAGCCGTTGCTCTTGCTGAGCAGT
CCAGCCGTCGCCTACTCCGCATTGCTGTCGGTGGCCACGGCTGGCCTGCC
GCCCGTCGCTGGCGTTTCGCTGATCGCGGCCGGCGTTGTTTCGGTCGGAT
TGCCATTTTTTCTTCCCCGTGATGATGGTGGTGGAGAATCGGACGGTGCT
AGCATACCACCAGCGACAGATGAGACAACGATGCAGGCCACCGAAGCCTC
TCCAGCCACAACGATGCAGGCCACCGAAGCCTCTCCAGCC
back to top