mRNA_H-canaliculatus_F_contig12312.1982.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12312.1982.1
Unique NamemRNA_H-canaliculatus_F_contig12312.1982.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12312.1982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12312contigH-canaliculatus_F_contig12312:1998..2858 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size798
Cds size426
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12312.1982.1prot_H-canaliculatus_F_contig12312.1982.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12312 2324..2749 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928948.3359756-UTR-H-canaliculatus_F_contig12312:1997..22211622928948.3359756-UTR-H-canaliculatus_F_contig12312:1997..2221Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12312 1998..2221 -
1696845625.2366874-UTR-H-canaliculatus_F_contig12312:1997..22211696845625.2366874-UTR-H-canaliculatus_F_contig12312:1997..2221Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12312 1998..2221 -
1622928948.3499856-UTR-H-canaliculatus_F_contig12312:2284..23231622928948.3499856-UTR-H-canaliculatus_F_contig12312:2284..2323Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12312 2285..2323 -
1696845625.2482495-UTR-H-canaliculatus_F_contig12312:2284..23231696845625.2482495-UTR-H-canaliculatus_F_contig12312:2284..2323Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12312 2285..2323 -
1622928948.3740673-UTR-H-canaliculatus_F_contig12312:2749..28581622928948.3740673-UTR-H-canaliculatus_F_contig12312:2749..2858Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12312 2750..2858 -
1696845625.2752643-UTR-H-canaliculatus_F_contig12312:2749..28581696845625.2752643-UTR-H-canaliculatus_F_contig12312:2749..2858Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12312 2750..2858 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928948.3616858-CDS-H-canaliculatus_F_contig12312:2323..27491622928948.3616858-CDS-H-canaliculatus_F_contig12312:2323..2749Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12312 2324..2749 -
1696845625.261098-CDS-H-canaliculatus_F_contig12312:2323..27491696845625.261098-CDS-H-canaliculatus_F_contig12312:2323..2749Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12312 2324..2749 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12312.1982.1

>prot_H-canaliculatus_F_contig12312.1982.1 ID=prot_H-canaliculatus_F_contig12312.1982.1|Name=mRNA_H-canaliculatus_F_contig12312.1982.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=142bp
MNMLDLLTALSDYSGVRTFLVGDYGDFGGFVFAWGIVFNQPILFSRCFGA
VTVQRLVLIHICKHLENTGGYYITHIAVITSHALISTGLSCSQVSGLLRY
QVCGLFVRYLSSFFSAGSREIALGIFHCKGAQSPELILTLA*
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mRNA from alignment at H-canaliculatus_F_contig12312:1998..2858-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12312.1982.1 ID=mRNA_H-canaliculatus_F_contig12312.1982.1|Name=mRNA_H-canaliculatus_F_contig12312.1982.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=861bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12312:1998..2858- (Hapterophycus canaliculatus Oshoro5f female)
GACTCTGGAGTGAAAACATTCGATTAGAAACCAAAACATTCTAGCCTGGG
CCGATTGCCGTCGAATTGGACACGCCACCATTCATTCCTTTCCTCTCCAA
GCTCTTCTTATGAACATGTTAGATTTACTCACAGCTCTGTCAGATTACTC
GGGAGTGCGAACTTTCCTCGTGGGAGATTACGGAGATTTCGGGGGGTTCG
TGTTCGCGTGGGGTATCGTCTTCAACCAACCAATCTTGTTTTCGCGCTGC
TTTGGTGCTGTGACGGTGCAGCGGCTAGTGTTAATTCATATCTGTAAACA
TCTGGAAAACACAGGGGGCTATTATATTACCCATATCGCGGTTATTACAT
CACACGCATTAATATCAACGGGGCTATCATGCTCCCAGGTTTCGGGGCTA
TTACGCTATCAGGTCTGCGGGTTATTTGTCCGATACCTTTCCTCTTTCTT
TTCCGCCGGTTCACGGGAAATCGCCCTCGGCATTTTCCACTGTAAGGGAG
CGCAGAGCCCAGAGCTAATTCTCACGCTAGCGTAGGAGCGATAGTTGCAA
AGAGCTTAGGAAGAGGTCGTCGAGGCCTCTGTTTGACTGGGCTGTGAGGA
TGAGGCACTTTCCGTTGTTTCGGATTCCTTATCTGAGGAATTGGATAGCG
CCAGTCATCGACGTTCCATCACCGTTAACGTGAGGAATATCTCCGCCAGA
TGAACAGGCGGATGGTTCTCAAGGAGACACTGGCCAGGGAGACGTGCCAC
CAGTAGAGAGAACGGAGGAATGTAGATCAGCAACGAACGAGGAAGACAGA
GGAATGTTGCGAGAGCTGGTCCGGATGATGAAGGAAGGGCAGGAACATCA
GCCCGTCCACC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12312:1998..2858-

>mRNA_H-canaliculatus_F_contig12312.1982.1 ID=mRNA_H-canaliculatus_F_contig12312.1982.1|Name=mRNA_H-canaliculatus_F_contig12312.1982.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=852bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12312:1998..2858- (Hapterophycus canaliculatus Oshoro5f female)
ATGAACATGTTAGATTTACTCACAGCTCTGTCAGATTACTCGGGAGTGCG
AACTTTCCTCGTGGGAGATTACGGAGATTTCGGGGGGTTCGTGTTCGCGT
GGGGTATCGTCTTCAACCAACCAATCTTGTTTTCGCGCTGCTTTGGTGCT
GTGACGGTGCAGCGGCTAGTGTTAATTCATATCTGTAAACATCTGGAAAA
CACAGGGGGCTATTATATTACCCATATCGCGGTTATTACATCACACGCAT
TAATATCAACGGGGCTATCATGCTCCCAGGTTTCGGGGCTATTACGCTAT
CAGGTCTGCGGGTTATTTGTCCGATACCTTTCCTCTTTCTTTTCCGCCGG
TTCACGGGAAATCGCCCTCGGCATTTTCCACTGTAAGGGAGCGCAGAGCC
CAGAGCTAATTCTCACGCTAGCGTAGATGAACATGTTAGATTTACTCACA
GCTCTGTCAGATTACTCGGGAGTGCGAACTTTCCTCGTGGGAGATTACGG
AGATTTCGGGGGGTTCGTGTTCGCGTGGGGTATCGTCTTCAACCAACCAA
TCTTGTTTTCGCGCTGCTTTGGTGCTGTGACGGTGCAGCGGCTAGTGTTA
ATTCATATCTGTAAACATCTGGAAAACACAGGGGGCTATTATATTACCCA
TATCGCGGTTATTACATCACACGCATTAATATCAACGGGGCTATCATGCT
CCCAGGTTTCGGGGCTATTACGCTATCAGGTCTGCGGGTTATTTGTCCGA
TACCTTTCCTCTTTCTTTTCCGCCGGTTCACGGGAAATCGCCCTCGGCAT
TTTCCACTGTAAGGGAGCGCAGAGCCCAGAGCTAATTCTCACGCTAGCGT
AG
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