mRNA_H-canaliculatus_F_contig12308.1978.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12308.1978.1
Unique NamemRNA_H-canaliculatus_F_contig12308.1978.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12308.1978.1 vs. uniprot
Match: D8LDN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDN9_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 2.110e-9
Identity = 23/32 (71.88%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:   82 HEGYAFTGCGAHVDYTLDLGSGAGYERVWCYV 177
            ++GY+FTGCGAHVDYTL+   G GYER WCYV
Sbjct:   23 YQGYSFTGCGAHVDYTLNTFEGGGYERTWCYV 54
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12308.1978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDN9_ECTSI2.110e-971.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12308contigH-canaliculatus_F_contig12308:335..2008 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size193
Cds size192
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928947.7239273-CDS-H-canaliculatus_F_contig12308:334..4391622928947.7239273-CDS-H-canaliculatus_F_contig12308:334..439Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12308 335..439 -
1696845624.9603276-CDS-H-canaliculatus_F_contig12308:334..4391696845624.9603276-CDS-H-canaliculatus_F_contig12308:334..439Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12308 335..439 -
1622928947.741307-CDS-H-canaliculatus_F_contig12308:1921..20081622928947.741307-CDS-H-canaliculatus_F_contig12308:1921..2008Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12308 1922..2008 -
1696845624.9696128-CDS-H-canaliculatus_F_contig12308:1921..20081696845624.9696128-CDS-H-canaliculatus_F_contig12308:1921..2008Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12308 1922..2008 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12308.1978.1prot_H-canaliculatus_F_contig12308.1978.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12308 335..2008 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12308.1978.1

>prot_H-canaliculatus_F_contig12308.1978.1 ID=prot_H-canaliculatus_F_contig12308.1978.1|Name=mRNA_H-canaliculatus_F_contig12308.1978.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=64bp
RPGRECQHDRHHRCLHVLRGWMVRSREHEGYAFTGCGAHVDYTLDLGSGA
GYERVWCYVRHVL*
back to top

mRNA from alignment at H-canaliculatus_F_contig12308:335..2008-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12308.1978.1 ID=mRNA_H-canaliculatus_F_contig12308.1978.1|Name=mRNA_H-canaliculatus_F_contig12308.1978.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1674bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12308:335..2008- (Hapterophycus canaliculatus Oshoro5f female)
CGACCTGGCCGAGAGTGTCAACATGACAGGCATCACCGCTGCCTGCACGT
GCTCCGTGGATGGATGGTCAGGAGCCGCGAACACGAGGTCAGTAGTGGCA
GCGCGAAGGTTTCCCCCCAAAGAAAGAACATCTTGTATCTGCACTTCAGA
CTATTCTTGGGGGGAGCTTTCAGAGCTCAGGGAAAGTGGCCGGGGTAAAA
AATAGGGAAGATCTGCGTCGGAGCCGTCAATCGATAGTTGTTCAATCGCC
TAGGATTCACCAGGGAGCTCACGGAAAAGTAGCGCCACAAAGAAAGCCGC
TCGATGCCGTCCAAGTTTTTTTTGCTCTCATCCCATCTGTTCTGGCCTAG
CCTGCCTTCTTCTCCTCTTCGGTGCATGATATGAGTTCTTTGTAGAGGTC
CAGAAGAAAAACGGTTCGCAGTAGAATGCGAAAAAAATAGATGAAATCAT
AACACCCAGCGCGCAATACATCGACGACAGGGAAACTAGCTCTCGCAGAA
CCACAACCGTCGAGGCGCCTTCTGCATGATGAGTGTCCTGTGCTCACAAG
AGGGAATAAAAAACACATTCCGGGAAGTGAGCGTCCCCATTTCCTCTGAT
ATTCAACTAGAAAGGAAATCACAAAGCACCAGCAACTTCGATCTCGTCGT
ACTGTAGTCCACGGATCGGGGTGGAACATCACGGGGAGTCGTCCTCAACT
ACCTCGTTTAGTCGGGTGGTAAGCAAATTGAGTCACTGTGGAGATGAACG
CATTAGCGAAAGGGGGCAGAGAGAGGGCATCGGTCGGCAAAAACGCTTGT
CGCGAGGCGATTTCGAGGCGCAAAACGTGCATTTCGAGTGCGTACGGAAG
GGTGAACGTCTGCGCCACAAGCCGGTCATGTTCCACACGAGGATTATTTC
CTTCGATTGAATGGTCTCAACGCCAGCCTATCTCCCATCGAGTGAGACAA
TTGTTAGTGGATGACGTCTTCGAAGGCTCTACCTCAATCGGTGGTCTGTC
GAGCGAGGCACCAGCCGCGGTGTCCTCTTATTTCGATTCAGCGGCAAAGA
AGCAGATTGCCCCGGCTCAACTAGAGTCTCAGTTTGTGTTTCGCAAGCAA
GCGTGGTGACCGCCCACTACCGGTGATCGGCCAAAAAAGACTCATTACAG
TGCACGTGGGGTTGCAGCGACGCCCGTCGGAATGCACCACGGTCGGTGTT
CTTTCGTGGTATTCAGGATCAGCTTGTTTTACAGCAAATGGCGGAAGGTT
GTCTTCTCTCCGAAGCAAGCAAGCGGCGACGCTCAGATGAATGACATATC
GCTTGCGCTTGCGCTATGCTCCTCCGGCGTACTGTCCGGACTACGTATTC
CGGTTGCTGCATCGATCCTGAGCCCACCTACCTAGGGCTCCGAGACTGAG
CTCTCACCCTGAGCAACCTATGCGCTCCTCCTAACCTGCCCAGGCTACGT
TTCTACTTAGCGGCCAGTGTTTGAACCTGGTGACTGGCCCGTAGACTGAA
ACAGCGATGGTAGCGACTCCAAATTTGACAGCTTGAATTGTCACTTCCGA
CCCACCGGACAGATACCAGGGCTACGCCTTTACCGGATGCGGTGCGCACG
TCGACTACACCCTGGACTTGGGGAGCGGTGCCGGCTACGAGCGAGTTTGG
TGCTACGTGAGACATGTGTTGTGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12308:335..2008-

>mRNA_H-canaliculatus_F_contig12308.1978.1 ID=mRNA_H-canaliculatus_F_contig12308.1978.1|Name=mRNA_H-canaliculatus_F_contig12308.1978.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=384bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12308:335..2008- (Hapterophycus canaliculatus Oshoro5f female)
CGACCTGGCCGAGAGTGTCAACATGACAGGCATCACCGCTGCCTGCACGT
GCTCCGTGGATGGATGGTCAGGAGCCGCGAACACGAGCGACCTGGCCGAG
AGTGTCAACATGACAGGCATCACCGCTGCCTGCACGTGCTCCGTGGATGG
ATGGTCAGGAGCCGCGAACACGAGGGCTACGCCTTTACCGGATGCGGTGC
GCACGTCGACTACACCCTGGACTTGGGGAGCGGTGCCGGCTACGAGCGAG
TTTGGTGCTACGTGAGACATGTGTTGTGAGGCTACGCCTTTACCGGATGC
GGTGCGCACGTCGACTACACCCTGGACTTGGGGAGCGGTGCCGGCTACGA
GCGAGTTTGGTGCTACGTGAGACATGTGTTGTGA
back to top