mRNA_H-canaliculatus_F_contig12301.1976.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12301.1976.1
Unique NamemRNA_H-canaliculatus_F_contig12301.1976.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12301.1976.1 vs. uniprot
Match: D7FXA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA9_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 1.450e-12
Identity = 42/76 (55.26%), Postives = 51/76 (67.11%), Query Frame = 2 
Query:   89 DRLRAMERDVAEGGPG---ASFVHTTIFPGDDFVFVGECNVLVLAEDRNRAEQHLTQLQKA-PASAEWRQKDGKEE 304
            D  R  E   A GG G   ASFVH TIFPGDDF F GECNVLVLAE +++AE HL +LQ + P++ E R K  ++E
Sbjct:  250 DNRRRREGVAASGGSGGFSASFVHATIFPGDDFTFAGECNVLVLAESKSQAEYHLIKLQDSLPSTTESRLKQEEDE 325
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BLAST of mRNA_H-canaliculatus_F_contig12301.1976.1 vs. uniprot
Match: A0A6H5K4I5_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4I5_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.640e-8
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 2 
Query:  137 ASFVHTTIFPGDDFVFVGECNVLVLAEDRNRAEQHLTQLQ 256
            ASFVH TIFPGDDF F GECNVLVLA  +++AE +L +LQ
Sbjct:  667 ASFVHATIFPGDDFTFAGECNVLVLAGSKSQAEDYLIKLQ 706
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12301.1976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXA9_ECTSI1.450e-1255.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4I5_9PHAE1.640e-870.00Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12301contigH-canaliculatus_F_contig12301:1798..3448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size382
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928947.5869617-CDS-H-canaliculatus_F_contig12301:1798..19231622928947.5869617-CDS-H-canaliculatus_F_contig12301:1798..1923Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12301 1799..1923 -
1696845624.9131367-CDS-H-canaliculatus_F_contig12301:1798..19231696845624.9131367-CDS-H-canaliculatus_F_contig12301:1798..1923Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12301 1799..1923 -
1622928947.5983865-CDS-H-canaliculatus_F_contig12301:3192..34481622928947.5983865-CDS-H-canaliculatus_F_contig12301:3192..3448Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12301 3193..3448 -
1696845624.924777-CDS-H-canaliculatus_F_contig12301:3192..34481696845624.924777-CDS-H-canaliculatus_F_contig12301:3192..3448Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12301 3193..3448 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12301.1976.1prot_H-canaliculatus_F_contig12301.1976.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12301 1799..3448 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12301.1976.1

>prot_H-canaliculatus_F_contig12301.1976.1 ID=prot_H-canaliculatus_F_contig12301.1976.1|Name=mRNA_H-canaliculatus_F_contig12301.1976.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=127bp
ADGGRRRGHRGAGGDIDVRVGEAGFRVGLGSASSDGAGRGGGGSRGVIRA
HHHLPRRRLRVRRGVQRAGARGGQEQGGAAPYPAAESARVRGMAAEGRER
RAPAAAAVVVEGEGARYWRGGGKGQGR
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mRNA from alignment at H-canaliculatus_F_contig12301:1798..3448-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12301.1976.1 ID=mRNA_H-canaliculatus_F_contig12301.1976.1|Name=mRNA_H-canaliculatus_F_contig12301.1976.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1651bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12301:1798..3448- (Hapterophycus canaliculatus Oshoro5f female)
GCCGACGGCGGGCGCCGGAGGGGGCACCGCGGGGCCGGAGGGGATATCGA
CGTCAGGGTCGGGGAGGCAGGATTCCGTGTCGGGCTCGGATCGGCTTCGA
GCGATGGAGCGGGACGTGGCGGAGGGGGGTCCCGGGGCGTCATTCGTGCA
CACCACCATCTTCCCCGGAGACGACTTCGTGTTCGTCGGGGAGTGCAACG
TGCTGGTGCTCGCGGAGGACAGGAACAGGGCGGAGCAGCACCTTACCCAG
CTGCAGGTGAGGGTCGCCGTGCATGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTTTGCTACTGCTGTGGTGGTCAGCGGTAGGTAG
GCGCGTGGGAGAGGGAGGAGAAAGGGAAGAGAGGCAGGGGGAGGGGAAAA
AGGAAAAGAAGGAAAGAAGGGAAGGAGAAGGACAAGAAGGACAAGGACAA
GGCTTATGTCTAGCGCCAAGGGCGTGTTGTAGTACTAGCGGGAGCAGCGG
CGGCAACAGCGGCGAGCTTCAGACTCACTCGGCGAGGTAAACATCGCGCT
GCAAGAGGTTGGCCTGTTGCATTCTTCACGTCGGCCCTAATGTCGAGGTC
CAAAGAGTCCGAAGGGTGTGCTTGTCGTCGCTATCACTACCGTGGAGGTC
AACCTCCCAAGACTCTGCAGCGGCGGAAGCTGGTTGTCGGCAAAGCCCCC
CCCTGATCCCCGGCGCGCCGGTTGATGGGGGAGTAGGAGAAGCTTGTTCA
CTGCAAGCCGGCTCTCACTGCGAGTCAGCCGTTCTCAAGCCACTCTTGGC
GAAGGCGGGCGGCCAGCGCAGCTGCCTGAGGACTGTGGGGAAGGCAGAGC
GATCGATCGATCCATCGTGAAGCGCCGCCCCTTCTCTGTTCAGGGGCTGG
CAAAGCTGAGTCGTGCGTGAAGACCGGGGAGGAGACGGCGCTTCACTTCA
ACTCCGCCTCCCGTCCTCTCAAGACTCCCTCGTCGGAGTGGAAATCCTGG
CGGCGAAGATCGTTCGCCGGTAGCCCAGCTTTCACGACCTTCCTCGAAAG
AAATCCCCGAAGGTCGCAAAATGCTTTGATTACTCACAGACAGTAGTAGT
GCTCGCTTGTTCTTTGAAGAAATGCACAACACGGTTGGAACGCCTCCTGA
GGTACGTCGTGCGAGGCGTAGGTCCAGGCTTCTGCTGAGCTCCAAACAGT
GAGGGTTCATTGATGAGCTTGTTCTTGCATAATCTTCTCGAAGCTTCCTG
TGACGTAGGATCTCGGGGCGTTCCGATATAGGCGAAAAAAACAGCCCGGC
AGAGACGGAGAGAGGGAGGGCTGGGATGCCGTGCCCTCGTCTTTCTCCGC
GTCCGCGACCTTCTTCCACGGAGCACCCCAATCCAGACGTCAAAGACCTA
CCGCTCAACCTCACCCGGTCCGCCAAAAGCTCGTCGCCTTTCAGCACCAC
GCTGCGCCGGGTCCGAGACCCATTTTTGTTTGTTTGTTTGTTTTGTCCCT
CATCGTCGTCGTCACCATCTCGCAGAAAGCGCCCGCGTCCGCGGAATGGC
GGCAGAAGGACGGGAAAGAAGAGCCCCCGCCGCCGCCGCCGTCGTCGTCG
AGGGAGAAGGAGCCAGGTACTGGAGAGGGGGGGGGAAAGGGCAAGGACGT
C
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12301:1798..3448-

>mRNA_H-canaliculatus_F_contig12301.1976.1 ID=mRNA_H-canaliculatus_F_contig12301.1976.1|Name=mRNA_H-canaliculatus_F_contig12301.1976.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=762bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12301:1798..3448- (Hapterophycus canaliculatus Oshoro5f female)
GCCGACGGCGGGCGCCGGAGGGGGCACCGCGGGGCCGGAGGGGATATCGA
CGTCAGGGTCGGGGAGGCAGGATTCCGTGTCGGGCTCGGATCGGCTTCGA
GCGATGGAGCGGGACGTGGCGGAGGGGGGTCCCGGGGCGTCATTCGTGCA
CACCACCATCTTCCCCGGAGACGACTTCGTGTTCGTCGGGGAGTGCAACG
TGCTGGTGCTCGCGGAGGACAGGAACAGGGCGGAGCAGCACCTTACCCAG
CTGCAGGCCGACGGCGGGCGCCGGAGGGGGCACCGCGGGGCCGGAGGGGA
TATCGACGTCAGGGTCGGGGAGGCAGGATTCCGTGTCGGGCTCGGATCGG
CTTCGAGCGATGGAGCGGGACGTGGCGGAGGGGGGTCCCGGGGCGTCATT
CGTGCACACCACCATCTTCCCCGGAGACGACTTCGTGTTCGTCGGGGAGT
GCAACGTGCTGGTGCTCGCGGAGGACAGGAACAGGGCGGAGCAGCACCTT
ACCCAGCTGCAGAAAGCGCCCGCGTCCGCGGAATGGCGGCAGAAGGACGG
GAAAGAAGAGCCCCCGCCGCCGCCGCCGTCGTCGTCGAGGGAGAAGGAGC
CAGGTACTGGAGAGGGGGGGGGAAAGGGCAAGGACGTAAAGCGCCCGCGT
CCGCGGAATGGCGGCAGAAGGACGGGAAAGAAGAGCCCCCGCCGCCGCCG
CCGTCGTCGTCGAGGGAGAAGGAGCCAGGTACTGGAGAGGGGGGGGGAAA
GGGCAAGGACGT
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