mRNA_H-canaliculatus_F_contig1230.1974.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1230.1974.1
Unique NamemRNA_H-canaliculatus_F_contig1230.1974.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1230.1974.1 vs. uniprot
Match: D7G090_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G090_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 1.260e-50
Identity = 117/208 (56.25%), Postives = 139/208 (66.83%), Query Frame = 1 
Query:    1 MSATYETLLTPATCVASDDEMCKSREGVRQSRGRKSG-FEKRSPQHDL--TAKTATKGTGKR---GPAEVTDKKRAKTSNVVKRAIHKMKKKSSKGSASSTRTPPSSAGD-IDTAPPKVEDLGIDPRLLEKWMARKELRKQGAVAGEHQL-ASRHAATLVVVGLSSGSLAWTKDRIRSLIQAHGVALAVCLVITAVAMACTLMLSRCS 600
            MS    TLLTPATCVASDD+M  S+ G R  RGR SG F KRS   DL  T+KT            PA   DK+RAKTSN++KRA+HK+ K                    +   PPK+++LGIDPRLLEKW ARKEL+KQGAVAG   + ASR  ATLV+VGLSSGSL WTK+RIR+  QAHGV LA+C++I AVA+ACTL+LSRCS
Sbjct:    1 MSKYDSTLLTPATCVASDDDMTMSQAGGRH-RGRWSGRFGKRSSHKDLLLTSKTPXXXXXXXITSDPAADIDKRRAKTSNIIKRAVHKINKXXXXXXXXXXXXXXXXXXXXVSEEPPKIDELGIDPRLLEKWKARKELKKQGAVAGGRPVSASRGTATLVMVGLSSGSLVWTKERIRTWSQAHGVLLALCVLIAAVAIACTLILSRCS 207
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1230.1974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G090_ECTSI1.260e-5056.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1230contigH-canaliculatus_F_contig1230:26110..28686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_000350.1
Exons2
Model size603
Cds size603
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928947.4444907-CDS-H-canaliculatus_F_contig1230:26109..264421622928947.4444907-CDS-H-canaliculatus_F_contig1230:26109..26442Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1230 26110..26442 +
1696845624.8601086-CDS-H-canaliculatus_F_contig1230:26109..264421696845624.8601086-CDS-H-canaliculatus_F_contig1230:26109..26442Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1230 26110..26442 +
1622928947.4773061-CDS-H-canaliculatus_F_contig1230:28416..286861622928947.4773061-CDS-H-canaliculatus_F_contig1230:28416..28686Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1230 28417..28686 +
1696845624.87082-CDS-H-canaliculatus_F_contig1230:28416..286861696845624.87082-CDS-H-canaliculatus_F_contig1230:28416..28686Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1230 28417..28686 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1230.1974.1prot_H-canaliculatus_F_contig1230.1974.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1230 26110..28686 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1230.1974.1

>prot_H-canaliculatus_F_contig1230.1974.1 ID=prot_H-canaliculatus_F_contig1230.1974.1|Name=mRNA_H-canaliculatus_F_contig1230.1974.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=201bp
MSATYETLLTPATCVASDDEMCKSREGVRQSRGRKSGFEKRSPQHDLTAK
TATKGTGKRGPAEVTDKKRAKTSNVVKRAIHKMKKKSSKGSASSTRTPPS
SAGDIDTAPPKVEDLGIDPRLLEKWMARKELRKQGAVAGEHQLASRHAAT
LVVVGLSSGSLAWTKDRIRSLIQAHGVALAVCLVITAVAMACTLMLSRCS
*
back to top

mRNA from alignment at H-canaliculatus_F_contig1230:26110..28686+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1230.1974.1 ID=mRNA_H-canaliculatus_F_contig1230.1974.1|Name=mRNA_H-canaliculatus_F_contig1230.1974.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2577bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1230:26110..28686+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCAGCGACATACGAGACGTTATTGACACCGGCGACCTGCGTAGCAAG
CGACGACGAGATGTGTAAGTCACGCGAAGGCGTGCGGCAAAGTCGGGGGC
GGAAGAGCGGCTTTGAGAAACGCTCTCCGCAGCACGACCTGACGGCGAAA
ACAGCAACGAAAGGGACCGGCAAACGAGGTCCCGCCGAAGTTACGGACAA
GAAGAGGGCGAAGACTTCGAACGTCGTCAAGCGCGCAATCCACAAGATGA
AGAAGAAGTCGAGCAAAGGCTCAGCATCCTCTACCCGGACGCCACCATCT
TCTGCTGGTGACATTGATACGGCACCCCCGAAGGTGTGTGAAGCGAGAAG
TCATTTCGACAGCAAAATGTGCCTGCCATTTGCTCCCCCCTCAAGTGCAT
GTACAACCGCCAGGAGACCAAACAGACGACACCCTAGAACGCCATGCTGT
GATAATCCCCGTGTCTGCAGATCCACACCCGAATCCTAAACGGTTTGCAA
ACTAGGTGCTGGGTGTGCGTACAGCTCGGAATTCAAATACGAAGCTGCAT
TGGTGCGAAGCCTTTTTAAATTCCAGCCTCGTCTCACCCGGTCCTTTCTC
CCCTCTGTTACCCCTCGGCCACGTGCTCCAAGTGTTTGACCAACACACCC
TTCTGTGAGCCAGAGGCTGCGCACGCCCTGTGCGATACGGGAGCGGGCCA
TAACTACCACCCGCTTTCCATTTCTCCCTGTCCTACTCGACGAAGAATAA
GCTTTGCTCGGGCTGCGATGAGGCGACGAGGGCTCATCTCAAGTAGCGTA
CGTTGACCTTGTGACCTTGTGGTCAGTCGTCAGTTCTCCCCGCAGCCCCT
GAAACGATACGAAACGGCGACAGGTTACCAAGCGCACGCCAATGACTACG
CAGCAAGTCTGTCCAATAACGATGCTCTACTTATCAGCAGTCGAGTCGCC
GGGGGGTAAAGCACACCTAGGGTTCACCACATCCTCCACAGCGGTACAGC
AGTGGCGGCTTCTGCTCGGAGGGTTGACGCCGCACAGCTGTACGCTACTG
CAGTTTCGACCTGAGAAGACGGAACCATCACAGCATCACAGCCTTGCAAG
AAAAAAAAACAACACGCGTAAACCCTGAAGTCGCCGGCATCCACCCCGTT
TTCGTGGGGCACATCTTCGTTCGAGAAGAACCGGTGTGTTTCGCAGTACG
CCGTACACAGTGCACGTGTGCACGGCGTACTGCTGTACCGTACAGTACGG
GGCGATGTTGTTTTGTCCAACGTGACGGGTTTGCACCTCTCGGCATATCT
GCGGGAATATTTCGGCGGAAAAGGAGGCGAACTTTATCCGGTCCAGAAGT
TGACGATTGCGATTCCGCGGGCGAAGATGATGGCTCACGGCTGGCCTGCT
GCCAACTGCTGGGGACGTTCGCCCGATCGGCGGAACGCGGAAGCATGAGA
GCATGCGGACAGAAACCCTCTCGGTGTCTTCTTTTCTTGAGCTGCTCATC
TTCGCCGCGTCTGCTCGCTGCTCCTTCGCCATGGAAGCCGTGCCCGCGGG
ATGACTCACTTTGCTGATTGAAGACGGTCTACCAAAACCAACCCTGCTCT
CAAAATCACCCGATCCTCCTTTGATGCCAACCCTAGGATCACTCCCGAGC
TCCCCAAATGTCTCGCGTTTGCTGTGGCCGCGGCGGTTGCTGTTGTTCCT
GTTCCGGCAATCTCCGAAGGAAAAGGGTACCAATTCCATGGCGTCTTTTC
CATGGCGTCGGTTGTGCTGAGGGCACCTCGCTTCCCATCGGAACAGAACG
GTGTATGCCAACCCCTCACGAGTCAAGCTTGGCTACAGTCAGTTGTCAGT
TGAAGCAGTGCCCCTGTTTCTCGCTCATCTGACTTTCAATGTTCTGCGTC
CCCGCGATTGGGTTCAAGAACGAAAGTTTTGCTGCCGCCGGGGTTCAAGC
CTTCTTTCGTTGTACCGGTACTCTCTCTTGCCAAGGCTAGGCATCTTGGC
GTCTCTCTGCTTTAGGGTTTTGCGACGTCACGAAAAAGCCAGCCAGATTC
CCCGAACCGAAGCAGGAGAGAGGTGGGCTGTTTCGCTTCCTTTGGGCGTT
CGTGCGTGCTGTCCCCTTGGTCGCACAAGCTCCCAGGACCGCTCACGCCT
TTGATCACTGGTGCCTAGTTTTCATGGACGACGTGCACGCGCTCCCTCTA
GGCAAAAAGCGTCCACTGGCAAGAAAAAGGAGTCAAACACAGTCGTGCCC
AGGTCATGAAATTGAACAGCGACCCATGTCCCACCGTTCCAACCTGCGGT
GCCGCAGGTCGAGGATCTCGGGATCGACCCTCGGCTCTTGGAAAAATGGA
TGGCGCGGAAGGAGCTCAGGAAGCAGGGGGCGGTGGCGGGGGAGCATCAG
CTAGCCTCAAGACATGCGGCGACGCTTGTGGTGGTGGGGCTCTCGTCAGG
GTCCTTGGCATGGACGAAAGATCGGATACGGAGCTTGATCCAAGCCCACG
GCGTGGCGTTGGCCGTGTGCTTGGTAATCACGGCGGTGGCCATGGCCTGC
ACGCTCATGTTGAGTCGCTGTTCTTAA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1230:26110..28686+

>mRNA_H-canaliculatus_F_contig1230.1974.1 ID=mRNA_H-canaliculatus_F_contig1230.1974.1|Name=mRNA_H-canaliculatus_F_contig1230.1974.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1206bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1230:26110..28686+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCAGCGACATACGAGACGTTATTGACACCGGCGACCTGCGTAGCAAG
CGACGACGAGATGTGTAAGTCACGCGAAGGCGTGCGGCAAAGTCGGGGGC
GGAAGAGCGGCTTTGAGAAACGCTCTCCGCAGCACGACCTGACGGCGAAA
ACAGCAACGAAAGGGACCGGCAAACGAGGTCCCGCCGAAGTTACGGACAA
GAAGAGGGCGAAGACTTCGAACGTCGTCAAGCGCGCAATCCACAAGATGA
AGAAGAAGTCGAGCAAAGGCTCAGCATCCTCTACCCGGACGCCACCATCT
TCTGCTGGTGACATTGATACGGCACCCCCGAAGATGTCAGCGACATACGA
GACGTTATTGACACCGGCGACCTGCGTAGCAAGCGACGACGAGATGTGTA
AGTCACGCGAAGGCGTGCGGCAAAGTCGGGGGCGGAAGAGCGGCTTTGAG
AAACGCTCTCCGCAGCACGACCTGACGGCGAAAACAGCAACGAAAGGGAC
CGGCAAACGAGGTCCCGCCGAAGTTACGGACAAGAAGAGGGCGAAGACTT
CGAACGTCGTCAAGCGCGCAATCCACAAGATGAAGAAGAAGTCGAGCAAA
GGCTCAGCATCCTCTACCCGGACGCCACCATCTTCTGCTGGTGACATTGA
TACGGCACCCCCGAAGGTCGAGGATCTCGGGATCGACCCTCGGCTCTTGG
AAAAATGGATGGCGCGGAAGGAGCTCAGGAAGCAGGGGGCGGTGGCGGGG
GAGCATCAGCTAGCCTCAAGACATGCGGCGACGCTTGTGGTGGTGGGGCT
CTCGTCAGGGTCCTTGGCATGGACGAAAGATCGGATACGGAGCTTGATCC
AAGCCCACGGCGTGGCGTTGGCCGTGTGCTTGGTAATCACGGCGGTGGCC
ATGGCCTGCACGCTCATGTTGAGTCGCTGTTCTTAAGTCGAGGATCTCGG
GATCGACCCTCGGCTCTTGGAAAAATGGATGGCGCGGAAGGAGCTCAGGA
AGCAGGGGGCGGTGGCGGGGGAGCATCAGCTAGCCTCAAGACATGCGGCG
ACGCTTGTGGTGGTGGGGCTCTCGTCAGGGTCCTTGGCATGGACGAAAGA
TCGGATACGGAGCTTGATCCAAGCCCACGGCGTGGCGTTGGCCGTGTGCT
TGGTAATCACGGCGGTGGCCATGGCCTGCACGCTCATGTTGAGTCGCTGT
TCTTAA
back to top