mRNA_H-canaliculatus_F_contig1230.1972.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1230.1972.1
Unique NamemRNA_H-canaliculatus_F_contig1230.1972.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1230.1972.1 vs. uniprot
Match: D7G088_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G088_ECTSI)

HSP 1 Score: 305 bits (781), Expect = 1.960e-93
Identity = 178/298 (59.73%), Postives = 206/298 (69.13%), Query Frame = 1 
Query:  199 MCNTAMLSKMR-----KASCFRHQPRTTAHPXXXXXXXXXXXXXXXXXDAGHNDAPRRPVKRVSFSPSEYVLGRAQDYDRTSFEVQRPMLRRRSTPASTAPTPVTVVISNDDDEEAGD-------HADFRGTWRRSHGFNWASLLEFSGVDKASIPAQAARMQSSSVVHLIDHDATSFRLVVHSDNGSTQEQYFFIGGQPRPNSAPTPTRTPASDPARATPSKGPGRAPASTTTLSSMRWTKNGQALVLTSMDAATGDEMTVSRHLASEGAVIVQHYTARRAKTGETAEAITIFRKMV 1056
            MCNTA+L+KMR     K SCFR Q R+ A P                  AG      RP KRVSFS +E VLGRAQDYDRTS EVQ P++RRR  P    P PV ++ S+++ ++  D       HA+F G WRRSHGF+W SLLEFSGVDKA +  QAARMQSSSVVHLIDHDA SFRLVVHSD+G+TQ+Q+FFIGGQPRP+    PT  P                  ST TLS+MRWTKNGQ LVLTS+DAATGDEMTVSRHLA++G+VIVQHY ARRAKTGETAEA+TIFR+MV
Sbjct:    1 MCNTAVLAKMRQVNNNKPSCFRRQ-RSAAVPHHQEHRRTKREREAQRT-AG------RPAKRVSFSANECVLGRAQDYDRTSCEVQTPLVRRRIIPKR--PAPVVIIPSDEEAKQQQDQEPHEQQHANFCGMWRRSHGFHWESLLEFSGVDKADVAEQAARMQSSSVVHLIDHDANSFRLVVHSDSGNTQDQHFFIGGQPRPS----PTNAP------------------STATLSNMRWTKNGQGLVLTSVDAATGDEMTVSRHLAAQGSVIVQHYAARRAKTGETAEAVTIFRRMV 266
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1230.1972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G088_ECTSI1.960e-9359.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1230contigH-canaliculatus_F_contig1230:9218..13422 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_000330.1
Exons2
Model size2686
Cds size912
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1230.1972.1prot_H-canaliculatus_F_contig1230.1972.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1230 10794..13224 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928947.1082218-UTR-H-canaliculatus_F_contig1230:9217..107931622928947.1082218-UTR-H-canaliculatus_F_contig1230:9217..10793Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1230 9218..10793 -
1696845624.7137976-UTR-H-canaliculatus_F_contig1230:9217..107931696845624.7137976-UTR-H-canaliculatus_F_contig1230:9217..10793Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1230 9218..10793 -
1622928947.209534-UTR-H-canaliculatus_F_contig1230:13224..134221622928947.209534-UTR-H-canaliculatus_F_contig1230:13224..13422Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1230 13225..13422 -
1696845624.742074-UTR-H-canaliculatus_F_contig1230:13224..134221696845624.742074-UTR-H-canaliculatus_F_contig1230:13224..13422Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1230 13225..13422 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928947.1759572-CDS-H-canaliculatus_F_contig1230:10793..112671622928947.1759572-CDS-H-canaliculatus_F_contig1230:10793..11267Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1230 10794..11267 -
1696845624.7218826-CDS-H-canaliculatus_F_contig1230:10793..112671696845624.7218826-CDS-H-canaliculatus_F_contig1230:10793..11267Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1230 10794..11267 -
1622928947.1967142-CDS-H-canaliculatus_F_contig1230:12786..132241622928947.1967142-CDS-H-canaliculatus_F_contig1230:12786..13224Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1230 12787..13224 -
1696845624.72989-CDS-H-canaliculatus_F_contig1230:12786..132241696845624.72989-CDS-H-canaliculatus_F_contig1230:12786..13224Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1230 12787..13224 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1230.1972.1

>prot_H-canaliculatus_F_contig1230.1972.1 ID=prot_H-canaliculatus_F_contig1230.1972.1|Name=mRNA_H-canaliculatus_F_contig1230.1972.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=304bp
MCNTAMLSKMRKASCFRHQPRTTAHPHQHQLQQQQQRRAKRDRDAGHNDA
PRRPVKRVSFSPSEYVLGRAQDYDRTSFEVQRPMLRRRSTPASTAPTPVT
VVISNDDDEEAGDHADFRGTWRRSHGFNWASLLEFSGVDKASIPAQAARM
QSSSVVHLIDHDATSFRLVVHSDNGSTQEQYFFIGGQPRPNSAPTPTRTP
ASDPARATPSKGPGRAPASTTTLSSMRWTKNGQALVLTSMDAATGDEMTV
SRHLASEGAVIVQHYTARRAKTGETAEAITIFRKMVGGEGKGGGGGGGGG
APQ*
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mRNA from alignment at H-canaliculatus_F_contig1230:9218..13422-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1230.1972.1 ID=mRNA_H-canaliculatus_F_contig1230.1972.1|Name=mRNA_H-canaliculatus_F_contig1230.1972.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4205bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1230:9218..13422- (Hapterophycus canaliculatus Oshoro5f female)
CGTGCCGCCGTGCACCCCATCAGAATACTACCGTCCCCTCCTAACGTGTT
ATTGTGTTATTGCTCTCCACACGGTGAAGGCGAGACAGCTCAACGTCTAG
ACGCTAGGGCAACACAGCAACAGGGCACAAGAGAGTCAAGGAGCACTGCT
GTCCAGCCGAGCAAACGGCCGATAGATCGACTCGGAAAGCGGGGATAGAT
GTGCAACACGGCCATGCTTTCCAAAATGCGAAAGGCCTCCTGCTTCCGTC
ATCAGCCCAGAACGACCGCGCACCCTCATCAGCATCAGCTGCAGCAGCAG
CAGCAGCGGCGAGCGAAGCGTGACCGGGACGCCGGGCACAACGACGCGCC
CCGGCGGCCTGTGAAACGGGTGAGCTTCTCCCCAAGCGAGTACGTCCTGG
GCAGGGCCCAGGACTACGACAGGACAAGCTTCGAGGTGCAGCGGCCGATG
CTGCGACGGCGGTCGACTCCAGCTTCGACAGCGCCGACGCCTGTTACTGT
CGTTATTTCCAACGATGACGATGAGGAGGCGGGGGACCACGCGGACTTCA
GAGGGACGTGGAGGCGGAGCCACGGGTTCAACTGGGCGTCGCTCCTGGAG
TTTTCTGGCGTAGACAAGGCTTCCATCCCTGCTCAGGTGCGGCGCTCATT
TTTGTCCTCCACGTCCTCTCCGTTTCACGCACCTCACGCCTCGGCCTTTT
ATTTTTTTGGCCCCGCAACGTTTGGTTTGTTTCCGAGTATAGTCTTGATG
CTATTTACAGCGGTATGCAGAAACAATGGTTGCACAGTGGAAAGAGTAGC
CGGCCTCTCTGCGTGTGTCGACTCTCGCCCTCGTGGACGCTCCTTCGAAC
GAAAGACCGGCGATGGGCGATGGTGCGCACAGCCGTGCTTGACGTTCCAC
GCAGGTATTTCACTGGGTGAGCTCAACCCAATCCCTGGGACAAAGAAGTA
CAAGCGTCCCAGTTTCATACGCACGCCGCTACAACATTTTCTGAAGTAAA
TTTAATTCGCGGGGGAGGCGGAGGAGGCGGGGGTGCGCGGGAAAATTACT
TCCCGATTCTCCGTCTCCCACGACTCGCGTCTACTTACAATGTACTCTTG
ACTCATGTATCAAAGATATGAGTGATTTTCTCAAAATGAAGATGCAGGAA
ATGAAATGGAAGATATGGGATATAGGAATGGCTCCTTCGCGCCAGCCTGC
GCCACTCTCGCCTTCGTTTGTGCGTCAGGTGTTTTGGTATCACCAAGGTG
TGAGGCAACTTCTGTTGCTTGTACTTGAAGCTGGTTTGGTGGTTTGGTCT
TCCTTCCTCTCTCTATTGTTTTTTTAAGCGAGGGCGGAACAGTCGAAGAC
GCGGCCGACCTTACGCCCTTCAAGCATGATTGATAACAGCAGTACGTACG
TATTGTACAACGTGGGTCGTGGGTCGCTACCATTATGCAAGTACACGGCA
AACAAATTATTTCTCGAGCCGCTGCTGCAGCAGCAAGGGGCAGGAAAGAT
GAATGTTGCGGACCCGTTCTGGGAAGTTGAGCCGGTCTTCCTCGTGAAGT
CGTAAAAGACGATGAGCCCCATGAAGACTCTGCAGAAGACTCTGCACCAA
CAGCAGTGGACTCCTTTCTGTTTCATGTCGCGCTCTTCCCGTGCCTTTTT
CTCCGAGAACCGATGATTTGCGCCCATCATCACACCTCCGCCGCGAGTCT
CGCATGTCCCAACTTTCTCTTCAAGAAAACGCTGCAACCTTCAACTTGAG
CGCAGGAGTCAAGCTCAGCTCCTATCTATCAATGCATATATCATACGACG
CAGCAGCTTGCCGACAGCCCTCGTTCTGAGGGTGCCGCACGCCTGCTCCA
CGGATCCGCATAAAAATGGATGGTGCATACAAGTAGATACACGAAGTATT
CTGTGTGCATGTCTGTGCCAAAGGGCACTCAACCATACAACCCACCCCAA
AAAAGCAAATTCAAAGGACAAGAAAGTACGTTCGCTCGTTTCCTGCGGGG
CAAAAACGAAGGGAACACTTGCTTGTGCTTCGTGCTTGGTAGCTATAAAT
GATCTGTTCTCTCTCTCTCTCGCCCCCCCCCGCCGTTCCCGCTATCACTA
ATGATGCCTCTCGCCTCTCTCGCGCGTTTTTTCCCTTTTTCCACCTCTCT
CGCAGGCGGCTCGGATGCAGTCCTCTTCCGTGGTGCACTTGATCGACCAC
GACGCTACCAGCTTCCGCCTCGTCGTCCACAGCGACAACGGGAGCACGCA
AGAACAGTACTTCTTCATCGGCGGCCAGCCCAGACCGAACTCGGCCCCGA
CCCCGACCCGGACCCCCGCCTCCGACCCCGCCCGCGCCACCCCTTCCAAG
GGGCCAGGGCGAGCACCGGCGTCCACAACCACGCTGTCGAGCATGCGGTG
GACGAAGAACGGACAGGCGCTGGTGCTGACGAGCATGGACGCGGCCACCG
GAGACGAGATGACGGTGTCGCGGCATCTCGCGTCGGAGGGCGCCGTTATC
GTGCAGCACTACACGGCGCGTCGCGCCAAGACGGGGGAGACCGCGGAGGC
GATAACGATCTTCAGAAAGATGGTGGGTGGGGAGGGGAAGGGCGGCGGCG
GCGGCGGCGGCGGCGGCGCGCCGCAATAACTTTCGCAAGACGGCGAGCCC
GCCCTCCCTCTGTCTGAAGGATCGTTGGGACGGGCGGCATTGGACGCTGG
GGGCACAGCCACTGCTGCTATGTGCCTCTGCGCCTGCCGCCGCCGCCGCC
GCCCGCGGCTATCCATGTTGGTCGGTTGTTTTCCTCTTCTCTGCCGGCCC
GCGCTGCATGTGATGTGGTGGGTACCTTGCCGTCGGCTGCCATTCGCTCA
CGGGGTCGTCGTGTCGTCGTGTGTCCATGTTCATGGGTTCCATGTTCATG
GATTCCATGTTCATGGGTTCCATGTTCATGTGCTCATGTCCATTTGTTCA
TGGGACACCGAGAAACAAGAGAAGATGAGGAAAGGCGGTCTGTAAATCAC
GGGAATCTTCGTGTGCTCCCAGTTGCTCCCCTGCTACCAGTAGATTTAGT
GCTTGTAGTGCTACTCCACTGCTGTTCTGTGGTGATGGGGTCAGGAAGAT
GGACAAACACAAAGTATGGATGTATGCTGCTGCTGCTGCCATCGATGCGG
AGTGAGTCCGGTTCGTGAGAGAGTGAAAAGAGAAAGGGGCTTGTGCCCTC
TGCCTGGATAGCTTGTACATTATTGTGAAAGTATAGTTTTGTGAGCATAT
AACTGTACTAGCAACTCCGGCGACGCACGTACGTGCGCTTAGCAGCGTAC
CTATTACGCGCTAATCGTCCTCGTGTTTGATGTGTGCAGTGTGTATTCGG
TGCGTACTTGTAGCTTTCGTCCGAAGTTTGTCGTTGCGTTTGGTGGGCAC
GTTGACGTTGACGTACGGATGTCCGGATGTCCGTCCGTGAGGTTGCGCTC
CCGAGAAGCGGGATCGATGGTTGTGGAGCGGACGAATGAATGCGCATCAA
GTCTTGTGCTTTTGGGGCATGTCGAGAAAAGCAGCAGCTGCACGTAGCAG
TGTTGAAGCGCTGAAGCGACTCTTCGGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTCAAATCGGCGTGTGTTTTCTGGATCGTTACGCTTACTAAGGGAC
ACAGTGCGGAGGCGTGTACTGACGAACGGACGAACGAACGAAGTGTTGTT
TCTGGGCATGGGATGGGATGGATCCCTCTCTCTCTCGTCCCTTGGGACGG
GCGCAGAAAGCCGTTGTTTGTGTTGTTCGTGGTGTCTGCTATCTAATACA
ACCTGGTATGGATTATGTGCAATGGTTGGTGCGAGGCAGTGGTGTCGCGT
CGAGACAGCACAGGCATCACAGGAGATGGTACGAGACATGTTTTTGTTAC
CTGTCGTAGAGGATGGTGGTGGTGATGACAAGGAATATAGCGTTGTTCAC
GAGTGCGCTGCATTTTGCTGAGCGGTACGGCGATCACTTTTGTCCCGTTG
TTTTAATTTTATCGCCACCCAGCGGACGTTGGTCAGCTTGGATGGTCCGG
TGTTCATTCAGTTGATTTTTTTCGCTGGCTTCGGAAATATCGAAACGATG
TCGTACCCAGCAGCTCTTCGCGGTGTGTGCTGCATATCGATATCGATCAG
AGGATTTAAAATATTAGATGAATCATACAGGGAAAATAATAAAATGACGG
AAGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1230:9218..13422-

>mRNA_H-canaliculatus_F_contig1230.1972.1 ID=mRNA_H-canaliculatus_F_contig1230.1972.1|Name=mRNA_H-canaliculatus_F_contig1230.1972.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1824bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1230:9218..13422- (Hapterophycus canaliculatus Oshoro5f female)
ATGTGCAACACGGCCATGCTTTCCAAAATGCGAAAGGCCTCCTGCTTCCG
TCATCAGCCCAGAACGACCGCGCACCCTCATCAGCATCAGCTGCAGCAGC
AGCAGCAGCGGCGAGCGAAGCGTGACCGGGACGCCGGGCACAACGACGCG
CCCCGGCGGCCTGTGAAACGGGTGAGCTTCTCCCCAAGCGAGTACGTCCT
GGGCAGGGCCCAGGACTACGACAGGACAAGCTTCGAGGTGCAGCGGCCGA
TGCTGCGACGGCGGTCGACTCCAGCTTCGACAGCGCCGACGCCTGTTACT
GTCGTTATTTCCAACGATGACGATGAGGAGGCGGGGGACCACGCGGACTT
CAGAGGGACGTGGAGGCGGAGCCACGGGTTCAACTGGGCGTCGCTCCTGG
AGTTTTCTGGCGTAGACAAGGCTTCCATCCCTGCTCAGATGTGCAACACG
GCCATGCTTTCCAAAATGCGAAAGGCCTCCTGCTTCCGTCATCAGCCCAG
AACGACCGCGCACCCTCATCAGCATCAGCTGCAGCAGCAGCAGCAGCGGC
GAGCGAAGCGTGACCGGGACGCCGGGCACAACGACGCGCCCCGGCGGCCT
GTGAAACGGGTGAGCTTCTCCCCAAGCGAGTACGTCCTGGGCAGGGCCCA
GGACTACGACAGGACAAGCTTCGAGGTGCAGCGGCCGATGCTGCGACGGC
GGTCGACTCCAGCTTCGACAGCGCCGACGCCTGTTACTGTCGTTATTTCC
AACGATGACGATGAGGAGGCGGGGGACCACGCGGACTTCAGAGGGACGTG
GAGGCGGAGCCACGGGTTCAACTGGGCGTCGCTCCTGGAGTTTTCTGGCG
TAGACAAGGCTTCCATCCCTGCTCAGGCGGCTCGGATGCAGTCCTCTTCC
GTGGTGCACTTGATCGACCACGACGCTACCAGCTTCCGCCTCGTCGTCCA
CAGCGACAACGGGAGCACGCAAGAACAGTACTTCTTCATCGGCGGCCAGC
CCAGACCGAACTCGGCCCCGACCCCGACCCGGACCCCCGCCTCCGACCCC
GCCCGCGCCACCCCTTCCAAGGGGCCAGGGCGAGCACCGGCGTCCACAAC
CACGCTGTCGAGCATGCGGTGGACGAAGAACGGACAGGCGCTGGTGCTGA
CGAGCATGGACGCGGCCACCGGAGACGAGATGACGGTGTCGCGGCATCTC
GCGTCGGAGGGCGCCGTTATCGTGCAGCACTACACGGCGCGTCGCGCCAA
GACGGGGGAGACCGCGGAGGCGATAACGATCTTCAGAAAGATGGTGGGTG
GGGAGGGGAAGGGCGGCGGCGGCGGCGGCGGCGGCGGCGCGCCGCAATAA
GCGGCTCGGATGCAGTCCTCTTCCGTGGTGCACTTGATCGACCACGACGC
TACCAGCTTCCGCCTCGTCGTCCACAGCGACAACGGGAGCACGCAAGAAC
AGTACTTCTTCATCGGCGGCCAGCCCAGACCGAACTCGGCCCCGACCCCG
ACCCGGACCCCCGCCTCCGACCCCGCCCGCGCCACCCCTTCCAAGGGGCC
AGGGCGAGCACCGGCGTCCACAACCACGCTGTCGAGCATGCGGTGGACGA
AGAACGGACAGGCGCTGGTGCTGACGAGCATGGACGCGGCCACCGGAGAC
GAGATGACGGTGTCGCGGCATCTCGCGTCGGAGGGCGCCGTTATCGTGCA
GCACTACACGGCGCGTCGCGCCAAGACGGGGGAGACCGCGGAGGCGATAA
CGATCTTCAGAAAGATGGTGGGTGGGGAGGGGAAGGGCGGCGGCGGCGGC
GGCGGCGGCGGCGCGCCGCAATAA
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