mRNA_H-canaliculatus_F_contig123.1970.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig123.1970.1 vs. uniprot
Match: D8LKW1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKW1_ECTSI) HSP 1 Score: 366 bits (940), Expect = 2.920e-120 Identity = 250/382 (65.45%), Postives = 280/382 (73.30%), Query Frame = 1
Query: 1 MMSGQTKSCLSAVIMLLAAALQADGFVCPTGPAVAGRSAPSMSSFAEASFLRAAGSSRWTTSSSKLS-STYAEYLESRAQKDAGKAVTPEADKQMSLFDSYQESRARTXXXXXXXXXXXXXXXXXQTKVSV--PGASKPAAAXXXXXXXAAPV----GKELSPYEEYMASKNKVKAVEAATTFEEKAKATVYGDYMAARAEEEGAPPADCAEEECDADEIEEQGGLFASYMASRGVKVEXXXXXXXXXXXXX-----AEEEVSFYESYMRSRNKVTEASATVTPQEVETVSEFDSYTAARAEKDAAQAVMPPAQKEASMFEDYRATQPSGSSEMASSKTPAGHKGTGGMADTRDPAPVTHSDPRKSISAAPSFAEYLKSKKN 1110
MM+GQ KSCL+AVIMLLAAA++ADGFVCPTG V+GRSA SMSS + S SSRW TSSSKL+ S Y EY+ R +KD+GK VTPEAD+Q+SLFDSY SR +T XXXXXXXXXXXXX + +V PG +PAA XXXXXXX KELSPYEEYM SKNKVKAVEAATTFEEKAK++VY DYMA+R E GA P DC EEECDADE++EQGGLFASYMASRG++VE AEEE+SFYESYMRSRNKVTEA+ATVTP EVETVS+ QK+ASMF+DY +TQ SGSS SKT GHKGTGGMADTRDPAPV H+DPRKSISAAPSFAEYLKSKKN
Sbjct: 1 MMNGQVKSCLTAVIMLLAAAIRADGFVCPTGRVVSGRSAVSMSSLTQGSSSPPPQSSRWATSSSKLNISPYEEYMALRQKKDSGKTVTPEADQQISLFDSYTSSREKTAALPXXXXXXXXXXXXXXXRATVTDPGVGRPAAPXXXXXXXXXXXXXXPAKELSPYEEYMQSKNKVKAVEAATTFEEKAKSSVYADYMASRTETTGAAPVDCVEEECDADELQEQGGLFASYMASRGMQVEAIDSVVPEIECEDEEECTAEEELSFYESYMRSRNKVTEAAATVTPAEVETVSQXXXXXXXXXXXXXXXXXXXXXQKQASMFDDYMSTQSSGSS----SKTAPGHKGTGGMADTRDPAPVNHADPRKSISAAPSFAEYLKSKKN 378
BLAST of mRNA_H-canaliculatus_F_contig123.1970.1 vs. uniprot
Match: A0A6H5JPP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPP9_9PHAE) HSP 1 Score: 241 bits (616), Expect = 5.530e-72 Identity = 198/374 (52.94%), Postives = 238/374 (63.64%), Query Frame = 1
Query: 4 MSGQTKSCLSAVIMLLAAALQADGFVCPTGPAVAGRSAPSMSSFAEASFLRAAGSSRWTTSSSKL-SSTYAEYLESRAQKDAGKAVTPEADKQMSLFDSYQESR-ARTXXXXXXXXXXXXXXXXXQTKVSVPGASKPAAAXXXXXXXAAPVGKELSPYEEYMASKNKVKAVEAATTFEEKAKATVYGDYMAAR-AEEEGA--PPADCAEEECDADEIEEQGGLFASYMASRGVKVEXXXXXXXXXXXXXAEEEVSFYESYMRSRNKVTEASATVTPQEVETVSEFDSYTAARAEKDAAQAVMPPAQKEASMFEDYRATQPSGSSEMASSKTPAGHKGTGGMADTRDPAPVTHSDPRKSISAAPSFAEYLKSKKN 1110
M G+TKSCLSA+++LL AA+QADGFV GP R+A S SS +AS SSRW TSSSKL SS Y EY+ +R QK++G AV+PEA+++ S+FDSYQ SR + XXXXXXXXXXXXXXXXX A PAA XXXXX ELSPYEEYM S+NK+KA EAATTFEEK R A+E G+ P ADC EEEC A+E+E++ GLFASYMA G+KVE EE+VS+Y+S+M SR V +A+A VTPQE ++F+D++ + S + SSKTP GHKGTGGMADTRDPAPV H DPRKSI AAPSFAEYLKSK+N
Sbjct: 3 MDGKTKSCLSALVVLLGAAIQADGFV--VGPVAPVRTAGSSSSLTKASL---GTSSRWATSSSKLQSSPYEEYMRTRQQKESGMAVSPEAEEKASMFDSYQASRNEQXXXXXXXXXXXXXXXXXXXXXXXXXPAPAPAAPSAXXXXXXXXXSTELSPYEEYMQSRNKIKAAEAATTFEEKXXXXXXXXXXXXRRAKESGSDVPVADCVEEECSAEEVEQEAGLFASYMA--GIKVEAT-----------TEEQVSYYDSHMASRKHVKDANADVTPQEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKALFDDFQ-KESSPTPTTTSSKTPPGHKGTGGMADTRDPAPVKHEDPRKSIPAAPSFAEYLKSKRN 357
BLAST of mRNA_H-canaliculatus_F_contig123.1970.1 vs. uniprot
Match: D7G2R1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R1_ECTSI) HSP 1 Score: 68.2 bits (165), Expect = 1.770e-9 Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = 1
Query: 991 HKGTGGMADTRDPAPVTHSDPRKSISAAPSFAEYLKSKKN 1110
H GTGGMADTRDP + H DPRKSISAAPSFAEYLKSK+N
Sbjct: 170 HIGTGGMADTRDPDALDHEDPRKSISAAPSFAEYLKSKQN 209
BLAST of mRNA_H-canaliculatus_F_contig123.1970.1 vs. uniprot
Match: A0A835YLE0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLE0_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 5.090e-9 Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 1
Query: 991 HKGTGGMADTRDPAPVTHSDPRKSISAAPSFAEYLKSK 1104
H+G GGMADTRDP PV H DPRKSIS AP+F EY+K K
Sbjct: 35 HRGVGGMADTRDPEPVDHEDPRKSISKAPTFEEYMKQK 72
BLAST of mRNA_H-canaliculatus_F_contig123.1970.1 vs. uniprot
Match: A0A835YTB4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTB4_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 5.090e-9 Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 1
Query: 991 HKGTGGMADTRDPAPVTHSDPRKSISAAPSFAEYLKSK 1104
H+G GGMADTRDP PV H DPRKSIS AP+F EY+K K
Sbjct: 37 HRGVGGMADTRDPEPVDHEDPRKSISKAPTFEEYMKQK 74
BLAST of mRNA_H-canaliculatus_F_contig123.1970.1 vs. uniprot
Match: D7G2R0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R0_ECTSI) HSP 1 Score: 68.2 bits (165), Expect = 1.240e-8 Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = 1
Query: 991 HKGTGGMADTRDPAPVTHSDPRKSISAAPSFAEYLKSKKN 1110
H GTGGMADTRDP + H DPRKSISAAPSFAEYLKSK+N
Sbjct: 375 HIGTGGMADTRDPDALDHEDPRKSISAAPSFAEYLKSKQN 414
BLAST of mRNA_H-canaliculatus_F_contig123.1970.1 vs. uniprot
Match: A0A7S1Z902_9STRA (Hypothetical protein (Fragment) n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z902_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 3.080e-8 Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 1
Query: 988 GHKGTGGMADTRDPAPVTHSDPRKSISAAPSFAEYLKSK 1104
GH G+GGMADTR+P + H DPRKSISAAPSF EYLKS+
Sbjct: 33 GHIGSGGMADTRNPDALNHEDPRKSISAAPSFEEYLKSR 71
BLAST of mRNA_H-canaliculatus_F_contig123.1970.1 vs. uniprot
Match: A0A7S2XX01_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX01_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 5.190e-8 Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 1
Query: 979 TPAGHKGTGGMADTRDPAP-VTHSDPRKSISAAPSFAEYLKSK 1104
T AGH G+GGMADTRDP P + SDPR+SISAAPSF EYLKS+
Sbjct: 119 TGAGHVGSGGMADTRDPEPFINESDPRQSISAAPSFEEYLKSR 161
BLAST of mRNA_H-canaliculatus_F_contig123.1970.1 vs. uniprot
Match: A0A7S2MQH4_9STRA (Hypothetical protein (Fragment) n=3 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MQH4_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 6.130e-8 Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 1
Query: 991 HKGTGGMADTRDPAPVTHSDPRKSISAAPSFAEYLKSK 1104
H G+GGMADTRDP + H DPRKSISAAPSF EYLKS+
Sbjct: 33 HIGSGGMADTRDPDAMEHEDPRKSISAAPSFEEYLKSR 70
BLAST of mRNA_H-canaliculatus_F_contig123.1970.1 vs. uniprot
Match: A0A7S2BTZ6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BTZ6_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 3.040e-7 Identity = 27/38 (71.05%), Postives = 30/38 (78.95%), Query Frame = 1
Query: 991 HKGTGGMADTRDPAPVTHSDPRKSISAAPSFAEYLKSK 1104
H G GGM DTRDP +TH DPRKSISAAPSF EY+K +
Sbjct: 76 HVGKGGMVDTRDPEVMTHEDPRKSISAAPSFEEYMKQR 113 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig123.1970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig123.1970.1 >prot_H-canaliculatus_F_contig123.1970.1 ID=prot_H-canaliculatus_F_contig123.1970.1|Name=mRNA_H-canaliculatus_F_contig123.1970.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=371bp MMSGQTKSCLSAVIMLLAAALQADGFVCPTGPAVAGRSAPSMSSFAEASFback to top mRNA from alignment at H-canaliculatus_F_contig123:53929..63274+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig123.1970.1 ID=mRNA_H-canaliculatus_F_contig123.1970.1|Name=mRNA_H-canaliculatus_F_contig123.1970.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=9346bp|location=Sequence derived from alignment at H-canaliculatus_F_contig123:53929..63274+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig123:53929..63274+ >mRNA_H-canaliculatus_F_contig123.1970.1 ID=mRNA_H-canaliculatus_F_contig123.1970.1|Name=mRNA_H-canaliculatus_F_contig123.1970.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2226bp|location=Sequence derived from alignment at H-canaliculatus_F_contig123:53929..63274+ (Hapterophycus canaliculatus Oshoro5f female)back to top |