mRNA_H-canaliculatus_F_contig12296.1963.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12296.1963.1
Unique NamemRNA_H-canaliculatus_F_contig12296.1963.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12296.1963.1 vs. uniprot
Match: D7G174_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G174_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 7.490e-26
Identity = 55/91 (60.44%), Postives = 73/91 (80.22%), Query Frame = 1 
Query:   97 TRKYKISSKGHLPPGWKVKRIEQAEKHRGYACRWYVYKHGKRSGLQDLKFKNLRDVQDFLNSDQPGAEAHRRAMDEAQQGGQGEASAETAE 369
            T++Y+ISS  +LPPGW++ R +Q EK+ GYACRWYVYK+GK S L +LKFKNLRDV+DF++SD PGA+ HRRAM++ ++  Q EAS   AE
Sbjct:  869 TKRYRISSSSNLPPGWEIIRSKQPEKNNGYACRWYVYKYGKGSNLPNLKFKNLRDVEDFVHSDLPGAKIHRRAMEKRKR--QTEASMHCAE 957
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BLAST of mRNA_H-canaliculatus_F_contig12296.1963.1 vs. uniprot
Match: A0A6H5JIC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIC2_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 3.100e-24
Identity = 52/89 (58.43%), Postives = 70/89 (78.65%), Query Frame = 1 
Query:  103 KYKISSKGHLPPGWKVKRIEQAEKHRGYACRWYVYKHGKRSGLQDLKFKNLRDVQDFLNSDQPGAEAHRRAMDEAQQGGQGEASAETAE 369
            +Y+ISS  +LPPGW++ R +Q EK++ YACRWYVYK+G  S L DLKFKNLRDV+DF++SD PGA+ HRRA+++ ++  Q EAS   AE
Sbjct:  888 RYRISSSSNLPPGWEIIRSKQPEKNKAYACRWYVYKYGNGSNLPDLKFKNLRDVEDFVHSDLPGAKIHRRALEKRKR--QTEASVHCAE 974
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12296.1963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G174_ECTSI7.490e-2660.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JIC2_9PHAE3.100e-2458.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12296contigH-canaliculatus_F_contig12296:135..1558 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size414
Cds size411
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928945.1078846-CDS-H-canaliculatus_F_contig12296:136..3701622928945.1078846-CDS-H-canaliculatus_F_contig12296:136..370Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12296 137..370 -
1696845623.8799531-CDS-H-canaliculatus_F_contig12296:136..3701696845623.8799531-CDS-H-canaliculatus_F_contig12296:136..370Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12296 137..370 -
1622928945.1244094-CDS-H-canaliculatus_F_contig12296:1381..15581622928945.1244094-CDS-H-canaliculatus_F_contig12296:1381..1558Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12296 1382..1558 -
1696845623.891459-CDS-H-canaliculatus_F_contig12296:1381..15581696845623.891459-CDS-H-canaliculatus_F_contig12296:1381..1558Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12296 1382..1558 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12296.1963.1prot_H-canaliculatus_F_contig12296.1963.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12296 137..1558 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12296.1963.1

>prot_H-canaliculatus_F_contig12296.1963.1 ID=prot_H-canaliculatus_F_contig12296.1963.1|Name=mRNA_H-canaliculatus_F_contig12296.1963.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=137bp
CGGGGNGVTDSVVQVTKGSDSSASTSVSTTASTRKYKISSKGHLPPGWKV
KRIEQAEKHRGYACRWYVYKHGKRSGLQDLKFKNLRDVQDFLNSDQPGAE
AHRRAMDEAQQGGQGEASAETAESSTPPKKKRKKERR
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mRNA from alignment at H-canaliculatus_F_contig12296:135..1558-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12296.1963.1 ID=mRNA_H-canaliculatus_F_contig12296.1963.1|Name=mRNA_H-canaliculatus_F_contig12296.1963.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1424bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12296:135..1558- (Hapterophycus canaliculatus Oshoro5f female)
TGTGGTGGTGGTGGTAATGGTGTTACCGACTCTGTCGTCCAAGTTACCAA
GGGCAGCGACTCGTCTGCCTCCACGAGTGTCTCCACGACTGCCTCCACGA
GGAAGTACAAGATCTCCTCGAAGGGCCATCTCCCTCCAGGCTGGAAGGTC
AAGCGCATCGAGCAGGCGGAAAAGCATGTGAGGATTTGATCAAACGCTTT
TTCTGAAACAGGTTTTAGGGAAGGCTTTTGGAAGTCCGGCGACGTAGACG
CGTTGGGAGAGCCGGGGAGGGAAAGGGGCGGCATGGTTTTTTGGTCGACT
TGGCGAAACTTGGCGAAACTTAGATGTATTTGTGGCGGCTGAGTGTCGGA
GAGTTTCGGATGTGCTTTTCCGAGGATGCGGCAGTGCTGTGGCACAAACC
CTGCTGCATGGCGACAGTGTAGCTATGCAAGAATGTGCTGTTATGATGTG
CTATGGTGCTATCATTCGAGCGGCAGACGTGTCTCGCAATCACCGTCGTA
ATTTTCTCGGCACCGGCACCGGCACCGGCACTGGCCGTCCCAACACCTTT
CGGGGTCCACCCGCGTCTCCGGAGATGCTCCCGGCTCAAGCCCTCTGCTG
AGTTTTGATAGGAGTTGCTGTCTTTTTGAAGAAATCATAGCAAAACCATA
AGAACACCTCCTGAGGTACGTCGTGTGAGGCGTAGCTCGAGGTTTCTGTC
GCTGTCTTGTTCCAGCGCTCTTTGCGCAGGTTCGTATGCTCGAAATAAAG
CAGTAGCACAGGAGAAGAAAGGTGCGCACAGCCAGCATCCAACGTCGCCA
TCCATCCCGCCTCCAGGGACCAGAGCTTGGTTGGTCTCCTTTGAAGTCTG
TATGTGTATGTGTATGTTTGTGTGTATGTGTATGTGAGTGGATGTTCATG
TAGCCCTCTCGCTTTTGCTACCAGGCACTCTATGCGACCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCTGTTGCTGAAGATTGCCGTCTGTCCAGCGAG
CTCGTCTACAGCCGCACGCCTGCTACCTGCGCGCCATTCCTTGTCCGGAC
GCTCGCTTGCATGCGAACCCCCCCTCCCTCCAACCCCAACCACTGAAGCA
AATATTCCGATATGCACGCGCGCGTCGATCGATCGACCGACCGACCATCC
CCACGTGGACGCGCCGGACACGGACGGGGACTTCGCAGAGGGGCTACGCC
TGCCGGTGGTACGTGTACAAGCACGGCAAGCGGAGCGGCCTCCAGGACCT
CAAGTTCAAGAACCTCAGGGATGTGCAGGACTTCCTCAACTCGGACCAGC
CGGGGGCCGAAGCCCACCGCCGGGCGATGGACGAGGCGCAGCAGGGCGGC
CAGGGGGAGGCGTCCGCGGAGACGGCCGAGTCGTCGACGCCGCCCAAGAA
AAAGAGGAAGAAGGAGAGACGGGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12296:135..1558-

>mRNA_H-canaliculatus_F_contig12296.1963.1 ID=mRNA_H-canaliculatus_F_contig12296.1963.1|Name=mRNA_H-canaliculatus_F_contig12296.1963.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=822bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12296:135..1558- (Hapterophycus canaliculatus Oshoro5f female)
TGTGGTGGTGGTGGTAATGGTGTTACCGACTCTGTCGTCCAAGTTACCAA
GGGCAGCGACTCGTCTGCCTCCACGAGTGTCTCCACGACTGCCTCCACGA
GGAAGTACAAGATCTCCTCGAAGGGCCATCTCCCTCCAGGCTGGAAGGTC
AAGCGCATCGAGCAGGCGGAAAAGCATTGTGGTGGTGGTGGTAATGGTGT
TACCGACTCTGTCGTCCAAGTTACCAAGGGCAGCGACTCGTCTGCCTCCA
CGAGTGTCTCCACGACTGCCTCCACGAGGAAGTACAAGATCTCCTCGAAG
GGCCATCTCCCTCCAGGCTGGAAGGTCAAGCGCATCGAGCAGGCGGAAAA
GCATAGGGGCTACGCCTGCCGGTGGTACGTGTACAAGCACGGCAAGCGGA
GCGGCCTCCAGGACCTCAAGTTCAAGAACCTCAGGGATGTGCAGGACTTC
CTCAACTCGGACCAGCCGGGGGCCGAAGCCCACCGCCGGGCGATGGACGA
GGCGCAGCAGGGCGGCCAGGGGGAGGCGTCCGCGGAGACGGCCGAGTCGT
CGACGCCGCCCAAGAAAAAGAGGAAGAAGGAGAGACGGAGGGGCTACGCC
TGCCGGTGGTACGTGTACAAGCACGGCAAGCGGAGCGGCCTCCAGGACCT
CAAGTTCAAGAACCTCAGGGATGTGCAGGACTTCCTCAACTCGGACCAGC
CGGGGGCCGAAGCCCACCGCCGGGCGATGGACGAGGCGCAGCAGGGCGGC
CAGGGGGAGGCGTCCGCGGAGACGGCCGAGTCGTCGACGCCGCCCAAGAA
AAAGAGGAAGAAGGAGAGACGG
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