mRNA_H-canaliculatus_F_contig12277.1954.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12277.1954.1
Unique NamemRNA_H-canaliculatus_F_contig12277.1954.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12277.1954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12277contigH-canaliculatus_F_contig12277:760..1082 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size325
Cds size309
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928943.7171047-UTR-H-canaliculatus_F_contig12277:759..7731622928943.7171047-UTR-H-canaliculatus_F_contig12277:759..773Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12277 760..773 +
1696845623.228423-UTR-H-canaliculatus_F_contig12277:759..7731696845623.228423-UTR-H-canaliculatus_F_contig12277:759..773Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12277 760..773 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928943.7334845-CDS-H-canaliculatus_F_contig12277:773..10821622928943.7334845-CDS-H-canaliculatus_F_contig12277:773..1082Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12277 774..1082 +
1696845623.2366533-CDS-H-canaliculatus_F_contig12277:773..10821696845623.2366533-CDS-H-canaliculatus_F_contig12277:773..1082Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12277 774..1082 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12277.1954.1prot_H-canaliculatus_F_contig12277.1954.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12277 774..1082 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12277.1954.1

>prot_H-canaliculatus_F_contig12277.1954.1 ID=prot_H-canaliculatus_F_contig12277.1954.1|Name=mRNA_H-canaliculatus_F_contig12277.1954.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=103bp
MGPGYIPGGVSSTHRGRLSCSVASTSLLPTQSFGPLLVPPRWSTAGLPAG
LSLVLAVAAPPATRTPPPHQRIVLEGKRYGRTIDDTPLTPYNPLVSCVPF
LPF
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mRNA from alignment at H-canaliculatus_F_contig12277:760..1082+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12277.1954.1 ID=mRNA_H-canaliculatus_F_contig12277.1954.1|Name=mRNA_H-canaliculatus_F_contig12277.1954.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=323bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12277:760..1082+ (Hapterophycus canaliculatus Oshoro5f female)
TCTATCGGAGAGGGATGGGGCCCGGGTACATCCCTGGGGGGGTCTCAAGC
ACACACCGCGGGAGGCTTTCCTGTTCTGTGGCGTCGACCTCCTTACTCCC
TACACAAAGTTTCGGACCGCTGTTGGTTCCCCCTCGCTGGTCGACTGCTG
GCCTTCCTGCCGGCCTCTCTCTTGTGCTCGCAGTGGCGGCGCCCCCCGCA
ACCCGAACGCCACCCCCGCACCAACGTATTGTCCTGGAGGGGAAACGCTA
CGGCCGTACAATCGACGATACGCCGTTAACGCCGTATAATCCTTTGGTTT
CTTGTGTTCCTTTTCTTCCTTTT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12277:760..1082+

>mRNA_H-canaliculatus_F_contig12277.1954.1 ID=mRNA_H-canaliculatus_F_contig12277.1954.1|Name=mRNA_H-canaliculatus_F_contig12277.1954.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=618bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12277:760..1082+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGGCCCGGGTACATCCCTGGGGGGGTCTCAAGCACACACCGCGGGAG
GCTTTCCTGTTCTGTGGCGTCGACCTCCTTACTCCCTACACAAAGTTTCG
GACCGCTGTTGGTTCCCCCTCGCTGGTCGACTGCTGGCCTTCCTGCCGGC
CTCTCTCTTGTGCTCGCAGTGGCGGCGCCCCCCGCAACCCGAACGCCACC
CCCGCACCAACGTATTGTCCTGGAGGGGAAACGCTACGGCCGTACAATCG
ACGATACGCCGTTAACGCCGTATAATCCTTTGGTTTCTTGTGTTCCTTTT
CTTCCTTTTATGGGGCCCGGGTACATCCCTGGGGGGGTCTCAAGCACACA
CCGCGGGAGGCTTTCCTGTTCTGTGGCGTCGACCTCCTTACTCCCTACAC
AAAGTTTCGGACCGCTGTTGGTTCCCCCTCGCTGGTCGACTGCTGGCCTT
CCTGCCGGCCTCTCTCTTGTGCTCGCAGTGGCGGCGCCCCCCGCAACCCG
AACGCCACCCCCGCACCAACGTATTGTCCTGGAGGGGAAACGCTACGGCC
GTACAATCGACGATACGCCGTTAACGCCGTATAATCCTTTGGTTTCTTGT
GTTCCTTTTCTTCCTTTT
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