mRNA_H-canaliculatus_F_contig12276.1953.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12276.1953.1
Unique NamemRNA_H-canaliculatus_F_contig12276.1953.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12276.1953.1 vs. uniprot
Match: D7FH97_ECTSI (Similar to chromosome fragility associated gene 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH97_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 3.180e-18
Identity = 56/91 (61.54%), Postives = 58/91 (63.74%), Query Frame = 1 
Query:    1 YRPRSPEEVCGNPHVMAALSKWLGEWKEKRRRGGPSDGGGRAXXXXXXXXXXXXXXXXXX-------DTRLCNMAMLCGPSGVGKTSAVFG 252
            YRPRSP+EVCGN   MAALSKWLGEWKEKR            XXXXXXXXX                D RLCNMAMLCGP GVGKTSAV+G
Sbjct:  804 YRPRSPDEVCGNAMQMAALSKWLGEWKEKRXXXXXXXXXXXXXXXXXXXXXESEYDWVRFSDEEEDEDARLCNMAMLCGPPGVGKTSAVYG 894
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BLAST of mRNA_H-canaliculatus_F_contig12276.1953.1 vs. uniprot
Match: A0A6H5KGC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGC2_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.340e-11
Identity = 30/40 (75.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 YRPRSPEEVCGNPHVMAALSKWLGEWKEKRRRGGPSDGGG 120
            YRPRSP+EVCGN   MAALSKWLGEWKEKR+ GG  D  G
Sbjct:  938 YRPRSPDEVCGNAMQMAALSKWLGEWKEKRKGGGGGDRAG 977
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BLAST of mRNA_H-canaliculatus_F_contig12276.1953.1 vs. uniprot
Match: UPI0020267978 (ATPase family AAA domain-containing protein 5 isoform X1 n=3 Tax=Sphaerodactylus townsendi TaxID=933632 RepID=UPI0020267978)

HSP 1 Score: 54.7 bits (130), Expect = 1.040e-6
Identity = 28/87 (32.18%), Postives = 42/87 (48.28%), Query Frame = 1 
Query:    1 YRPRSPEEVCGNPHVMAALSKWLGEWKEK----RRRGGPSDGGGRAXXXXXXXXXXXXXXXXXXDTRLCNMAMLCGPSGVGKTSAVF 249
            Y+P++ +E+ GN   +  L +WL EWK++      R    +  G                    +T LCN  +L GPSGVGKT+AV+
Sbjct: 1007 YQPQNSDELIGNTAAIKKLHRWLSEWKKRAYLEENRAQKEEKCGSQEESLDSMDFKDDKSYSDGETDLCNTMLLSGPSGVGKTAAVY 1093
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BLAST of mRNA_H-canaliculatus_F_contig12276.1953.1 vs. uniprot
Match: A0A7K9SUY6_9AVES (ATAD5 protein (Fragment) n=1 Tax=Galbula dea TaxID=1109041 RepID=A0A7K9SUY6_9AVES)

HSP 1 Score: 53.5 bits (127), Expect = 2.620e-6
Identity = 31/89 (34.83%), Postives = 40/89 (44.94%), Query Frame = 1 
Query:    1 YRPRSPEEVCGNPHVMAALSKWLGEWK------EKRRRGGPSDGGGRAXXXXXXXXXXXXXXXXXXDTRLCNMAMLCGPSGVGKTSAVF 249
            Y+P+   E+ GN   +  L  WL EWK      EKR + G  D                       DT LCN  ++ GPSGVGKT+AV+
Sbjct:  442 YQPQDSSELVGNKKEIERLHSWLKEWKKRADWEEKRNQKGEEDK--EHQESLDSLDFKGSKSDLEEDTGLCNTVLITGPSGVGKTAAVY 528
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BLAST of mRNA_H-canaliculatus_F_contig12276.1953.1 vs. uniprot
Match: UPI00192F37F1 (ATPase family AAA domain-containing protein 5 isoform X1 n=2 Tax=Crotalus tigris TaxID=88082 RepID=UPI00192F37F1)

HSP 1 Score: 52.4 bits (124), Expect = 6.750e-6
Identity = 28/87 (32.18%), Postives = 39/87 (44.83%), Query Frame = 1 
Query:    1 YRPRSPEEVCGNPHVMAALSKWLGEWKEK----RRRGGPSDGGGRAXXXXXXXXXXXXXXXXXXDTRLCNMAMLCGPSGVGKTSAVF 249
            Y+P++  E+ GN   +  L +WL EWK K     +R       G                    +  LCN  +L GPSGVGKT+AV+
Sbjct:  992 YQPQNSSELIGNTEAIKKLQRWLCEWKRKADWEEKRTQKEKKNGSRDDSSEHLDFIDDTSLSDEENVLCNTMLLIGPSGVGKTAAVY 1078
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BLAST of mRNA_H-canaliculatus_F_contig12276.1953.1 vs. uniprot
Match: A0A8C0SND8_CANLF (ATPase family AAA domain containing 5 n=1 Tax=Canis lupus familiaris TaxID=9615 RepID=A0A8C0SND8_CANLF)

HSP 1 Score: 52.4 bits (124), Expect = 6.750e-6
Identity = 27/89 (30.34%), Postives = 41/89 (46.07%), Query Frame = 1 
Query:    1 YRPRSPEEVCGNPHVMAALSKWLGEWK------EKRRRGGPSDGGGRAXXXXXXXXXXXXXXXXXXDTRLCNMAMLCGPSGVGKTSAVF 249
            Y+P++  E+ GN   +  L  WL +WK      E++   G  D                       +TRLCN  ++ GP+GVGKT+AV+
Sbjct:  991 YQPQNSNELIGNELAIKKLHSWLKDWKKRAELEERQNLKGKKDEKQEGILNLLDSIDFKGSSDDEEETRLCNTVLITGPTGVGKTAAVY 1079
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BLAST of mRNA_H-canaliculatus_F_contig12276.1953.1 vs. uniprot
Match: A0A8C0SPK2_CANLF (ATPase family AAA domain containing 5 n=1 Tax=Canis lupus familiaris TaxID=9615 RepID=A0A8C0SPK2_CANLF)

HSP 1 Score: 52.4 bits (124), Expect = 6.760e-6
Identity = 27/89 (30.34%), Postives = 41/89 (46.07%), Query Frame = 1 
Query:    1 YRPRSPEEVCGNPHVMAALSKWLGEWK------EKRRRGGPSDGGGRAXXXXXXXXXXXXXXXXXXDTRLCNMAMLCGPSGVGKTSAVF 249
            Y+P++  E+ GN   +  L  WL +WK      E++   G  D                       +TRLCN  ++ GP+GVGKT+AV+
Sbjct: 1046 YQPQNSNELIGNELAIKKLHSWLKDWKKRAELEERQNLKGKKDEKQEGILNLLDSIDFKGSSDDEEETRLCNTVLITGPTGVGKTAAVY 1134
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BLAST of mRNA_H-canaliculatus_F_contig12276.1953.1 vs. uniprot
Match: A0A8D2CCK3_PIG (AAA domain-containing protein n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D2CCK3_PIG)

HSP 1 Score: 52.0 bits (123), Expect = 9.240e-6
Identity = 27/89 (30.34%), Postives = 41/89 (46.07%), Query Frame = 1 
Query:    1 YRPRSPEEVCGNPHVMAALSKWLGEWK------EKRRRGGPSDGGGRAXXXXXXXXXXXXXXXXXXDTRLCNMAMLCGPSGVGKTSAVF 249
            Y+P++  E+ GN   +  L  WL +WK      E++   G  D                       +TRLCN  ++ GP+GVGKT+AV+
Sbjct: 1001 YQPQNSSELIGNELAIKKLHSWLKDWKRRAELEERQNLKGKRDEKQEGILNPLDSIDFKGSSDDEEETRLCNTVLITGPTGVGKTAAVY 1089
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BLAST of mRNA_H-canaliculatus_F_contig12276.1953.1 vs. uniprot
Match: A0A8C5KLL3_JACJA (ATPase family AAA domain containing 5 n=2 Tax=Jaculus jaculus TaxID=51337 RepID=A0A8C5KLL3_JACJA)

HSP 1 Score: 51.6 bits (122), Expect = 1.260e-5
Identity = 27/89 (30.34%), Postives = 41/89 (46.07%), Query Frame = 1 
Query:    1 YRPRSPEEVCGNPHVMAALSKWLGEWK------EKRRRGGPSDGGGRAXXXXXXXXXXXXXXXXXXDTRLCNMAMLCGPSGVGKTSAVF 249
            Y+P++  E+ GN   +  L  WL +WK      EK+   G  D                       ++RLCN  ++ GP+GVGKT+AV+
Sbjct:  902 YQPQNANELIGNELAVKKLHSWLQDWKRRAELEEKQNLKGKRDEKQEGILNLSDSTDFKGSSDDEEESRLCNTVLITGPTGVGKTAAVY 990
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12276.1953.1 vs. uniprot
Match: A0A553MT51_9TELE (AAA domain-containing protein n=2 Tax=Danionella translucida TaxID=623744 RepID=A0A553MT51_9TELE)

HSP 1 Score: 51.2 bits (121), Expect = 1.700e-5
Identity = 31/95 (32.63%), Postives = 40/95 (42.11%), Query Frame = 1 
Query:    1 YRPRSPEEVCGNPHVMAALSKWLGEWK------------EKRRRGGPSDGGGRAXXXXXXXXXXXXXXXXXXDTRLCNMAMLCGPSGVGKTSAVF 249
            Y P++  EV GN   +  L  WL EWK            E RR+   SDG                      +  LCN  ++ GPSGVGKT+AV+
Sbjct:  277 YSPQAVSEVIGNSTSVQQLHSWLNEWKTRSDNEDRRKRQEHRRKKVNSDGDEFFIDLWDCGDFEGDAAFIDQENDLCNTVLITGPSGVGKTAAVY 371
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12276.1953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FH97_ECTSI3.180e-1861.54Similar to chromosome fragility associated gene 1 ... [more]
A0A6H5KGC2_9PHAE1.340e-1175.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI00202679781.040e-632.18ATPase family AAA domain-containing protein 5 isof... [more]
A0A7K9SUY6_9AVES2.620e-634.83ATAD5 protein (Fragment) n=1 Tax=Galbula dea TaxID... [more]
UPI00192F37F16.750e-632.18ATPase family AAA domain-containing protein 5 isof... [more]
A0A8C0SND8_CANLF6.750e-630.34ATPase family AAA domain containing 5 n=1 Tax=Cani... [more]
A0A8C0SPK2_CANLF6.760e-630.34ATPase family AAA domain containing 5 n=1 Tax=Cani... [more]
A0A8D2CCK3_PIG9.240e-630.34AAA domain-containing protein n=1 Tax=Sus scrofa T... [more]
A0A8C5KLL3_JACJA1.260e-530.34ATPase family AAA domain containing 5 n=2 Tax=Jacu... [more]
A0A553MT51_9TELE1.700e-532.63AAA domain-containing protein n=2 Tax=Danionella t... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12276contigH-canaliculatus_F_contig12276:2236..3306 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.7
Seed ortholog evalue5.9e-15
Seed eggNOG ortholog2880.D7FH97
KEGG koko:K10754
KEGG Pathwayko03030,ko03420,ko03430,map03030,map03420,map03430
KEGG ModuleM00289,M00295
EggNOG free text desc.DNA clamp loader activity
EggNOG OGsCOG5275@1,KOG1968@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size255
Cds size255
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928943.6080945-CDS-H-canaliculatus_F_contig12276:2235..23251622928943.6080945-CDS-H-canaliculatus_F_contig12276:2235..2325Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12276 2236..2325 -
1696845623.2084231-CDS-H-canaliculatus_F_contig12276:2235..23251696845623.2084231-CDS-H-canaliculatus_F_contig12276:2235..2325Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12276 2236..2325 -
1622928943.6359582-CDS-H-canaliculatus_F_contig12276:3141..33061622928943.6359582-CDS-H-canaliculatus_F_contig12276:3141..3306Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12276 3142..3306 -
1696845623.2198055-CDS-H-canaliculatus_F_contig12276:3141..33061696845623.2198055-CDS-H-canaliculatus_F_contig12276:3141..3306Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12276 3142..3306 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12276.1953.1prot_H-canaliculatus_F_contig12276.1953.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12276 2236..3306 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12276.1953.1

>prot_H-canaliculatus_F_contig12276.1953.1 ID=prot_H-canaliculatus_F_contig12276.1953.1|Name=mRNA_H-canaliculatus_F_contig12276.1953.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=85bp
YRPRSPEEVCGNPHVMAALSKWLGEWKEKRRRGGPSDGGGRAKGDGDGDS
GEESEDEDDEDTRLCNMAMLCGPSGVGKTSAVFG*
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mRNA from alignment at H-canaliculatus_F_contig12276:2236..3306-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12276.1953.1 ID=mRNA_H-canaliculatus_F_contig12276.1953.1|Name=mRNA_H-canaliculatus_F_contig12276.1953.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1071bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12276:2236..3306- (Hapterophycus canaliculatus Oshoro5f female)
TATCGACCGCGGTCCCCAGAAGAGGTCTGCGGCAACCCCCACGTCATGGC
CGCCCTGTCCAAGTGGCTGGGGGAGTGGAAGGAGAAGCGGAGGCGTGGCG
GGCCCAGCGATGGCGGAGGCCGGGCCAAGGGCGACGGGGACGGCGACTCC
GGAGAAGAGTCGGAGGTGAGGGTCTGGCGCCTGAGGCCTGATGACCTCCA
CGCTACGTCGCGTTCTGCGCGGCGCCACTTTTTTTTTTTATCTAGCTTTT
TGTTTTCGGTTGTGAGAACGAGCGCAACAACACCGAAGGAACACCGGCAC
CCTGCGCTGAGACAAAATGATGGCGACCCAGGAGTGAGTCTGTCGTTGTG
TTTGCACTTCTTGTTGTTGTTTCTGCACTTCGTATTGTTGTTTCTGCACC
TCTTGTTCGAGATGTTTCGCAAACGTTCTGTCGTGGCGCAGCTTGGCTTT
CGCGCTTTTTTTTTCCTCGTTTTTTTTTCGCATGTTTCTTGTGTTCTTCT
CTTGGACTGCCGGTAGTCCTGGGTGGCGTGGTCCGGCCAACCGCACACCC
GAAGCTTTCGAATCGTTTTCTCTGCAAGAAATAGTTCAACAACACCAGAG
GAATACCCTCCGCTGAAACAAAAGTAAGAAGGGTTTTGTTGAATTTCTCA
CAATGTGGGTTCAGTTTTTTTTTTTTACGGAACACCCGAAACTTTCGTTT
CCGTTTCGTTTTTTTGTGTGCCCTCTCCCACTGAGCGATTTCGTGCAGCC
GAAGTGTGGCCCCTGAGGCACAGCCGTCGCCTCTGCTGGGACAACCTGGG
CGTGTTTTCCGTCTCCCCGTTCATGTTTCGGGTTTGTATGTGGTTGCGTT
GTCTTTGCGGAAGCCGTTTTTTTTTCCAATCACATCGCGTTTTCCACAAA
TTCGTTTCTTAGCCCCTCCCCTTTTTTATTTTTTGTTATCCCTCTGGTTT
CACACCGCAGTACGACTGGGCCTACTCAGAGGACGAGGACGACGAGGACA
CTCGCCTGTGCAACATGGCCATGCTCTGCGGGCCGTCTGGTGTGGGCAAG
ACGAGCGCCGTGTTTGGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12276:2236..3306-

>mRNA_H-canaliculatus_F_contig12276.1953.1 ID=mRNA_H-canaliculatus_F_contig12276.1953.1|Name=mRNA_H-canaliculatus_F_contig12276.1953.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=510bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12276:2236..3306- (Hapterophycus canaliculatus Oshoro5f female)
TATCGACCGCGGTCCCCAGAAGAGGTCTGCGGCAACCCCCACGTCATGGC
CGCCCTGTCCAAGTGGCTGGGGGAGTGGAAGGAGAAGCGGAGGCGTGGCG
GGCCCAGCGATGGCGGAGGCCGGGCCAAGGGCGACGGGGACGGCGACTCC
GGAGAAGAGTCGGAGTATCGACCGCGGTCCCCAGAAGAGGTCTGCGGCAA
CCCCCACGTCATGGCCGCCCTGTCCAAGTGGCTGGGGGAGTGGAAGGAGA
AGCGGAGGCGTGGCGGGCCCAGCGATGGCGGAGGCCGGGCCAAGGGCGAC
GGGGACGGCGACTCCGGAGAAGAGTCGGAGGACGAGGACGACGAGGACAC
TCGCCTGTGCAACATGGCCATGCTCTGCGGGCCGTCTGGTGTGGGCAAGA
CGAGCGCCGTGTTTGGGTGAGACGAGGACGACGAGGACACTCGCCTGTGC
AACATGGCCATGCTCTGCGGGCCGTCTGGTGTGGGCAAGACGAGCGCCGT
GTTTGGGTGA
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