mRNA_H-canaliculatus_F_contig12276.1952.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12276.1952.1
Unique NamemRNA_H-canaliculatus_F_contig12276.1952.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12276.1952.1 vs. uniprot
Match: D7FH97_ECTSI (Similar to chromosome fragility associated gene 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH97_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 2.210e-16
Identity = 41/43 (95.35%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    4 CARALGYEVIEVNPSQLRSGAAIRRLFGEATQSHHVSSAESSS 132
            CA+ALGYEVIEVNPSQLRSGAAIRRLFGEATQSHHVSSAE+SS
Sbjct:  895 CAKALGYEVIEVNPSQLRSGAAIRRLFGEATQSHHVSSAETSS 937
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BLAST of mRNA_H-canaliculatus_F_contig12276.1952.1 vs. uniprot
Match: A0A4D9CZ35_9STRA (Bromo domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZ35_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 4.590e-6
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:   16 LGYEVIEVNPSQLRSGAAIRRLFGEATQSHHVSSAES 126
            LG+EVIEVN SQLRSG  I++LF EATQS H+  A S
Sbjct:  653 LGFEVIEVNTSQLRSGVEIKKLFSEATQSQHIRQASS 689
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12276.1952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FH97_ECTSI2.210e-1695.35Similar to chromosome fragility associated gene 1 ... [more]
A0A4D9CZ35_9STRA4.590e-667.57Bromo domain-containing protein n=2 Tax=Monodopsid... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12276contigH-canaliculatus_F_contig12276:836..994 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue1.5e-13
Seed eggNOG ortholog2880.D7FH97
KEGG koko:K10754
KEGG Pathwayko03030,ko03420,ko03430,map03030,map03420,map03430
KEGG ModuleM00289,M00295
EggNOG free text desc.DNA clamp loader activity
EggNOG OGsCOG5275@1,KOG1968@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03400
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928943.5674276-CDS-H-canaliculatus_F_contig12276:835..9941622928943.5674276-CDS-H-canaliculatus_F_contig12276:835..994Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12276 836..994 -
1696845623.1974216-CDS-H-canaliculatus_F_contig12276:835..9941696845623.1974216-CDS-H-canaliculatus_F_contig12276:835..994Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12276 836..994 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12276.1952.1prot_H-canaliculatus_F_contig12276.1952.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12276 836..994 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12276.1952.1

>prot_H-canaliculatus_F_contig12276.1952.1 ID=prot_H-canaliculatus_F_contig12276.1952.1|Name=mRNA_H-canaliculatus_F_contig12276.1952.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=53bp
SCARALGYEVIEVNPSQLRSGAAIRRLFGEATQSHHVSSAESSSLAPPGS
YSS
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mRNA from alignment at H-canaliculatus_F_contig12276:836..994-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12276.1952.1 ID=mRNA_H-canaliculatus_F_contig12276.1952.1|Name=mRNA_H-canaliculatus_F_contig12276.1952.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=159bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12276:836..994- (Hapterophycus canaliculatus Oshoro5f female)
AGCTGCGCCAGGGCTTTGGGGTACGAGGTAATCGAGGTCAACCCTTCCCA
GCTCCGATCCGGAGCCGCCATCCGCCGTCTTTTCGGGGAGGCCACGCAGT
CCCACCACGTCTCCTCCGCGGAGAGCAGCAGCCTGGCACCGCCAGGTTCG
TACAGCAGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12276:836..994-

>mRNA_H-canaliculatus_F_contig12276.1952.1 ID=mRNA_H-canaliculatus_F_contig12276.1952.1|Name=mRNA_H-canaliculatus_F_contig12276.1952.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=318bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12276:836..994- (Hapterophycus canaliculatus Oshoro5f female)
AGCTGCGCCAGGGCTTTGGGGTACGAGGTAATCGAGGTCAACCCTTCCCA
GCTCCGATCCGGAGCCGCCATCCGCCGTCTTTTCGGGGAGGCCACGCAGT
CCCACCACGTCTCCTCCGCGGAGAGCAGCAGCCTGGCACCGCCAGGTTCG
TACAGCAGTAGCTGCGCCAGGGCTTTGGGGTACGAGGTAATCGAGGTCAA
CCCTTCCCAGCTCCGATCCGGAGCCGCCATCCGCCGTCTTTTCGGGGAGG
CCACGCAGTCCCACCACGTCTCCTCCGCGGAGAGCAGCAGCCTGGCACCG
CCAGGTTCGTACAGCAGT
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