mRNA_H-canaliculatus_F_contig12274.1951.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12274.1951.1
Unique NamemRNA_H-canaliculatus_F_contig12274.1951.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12274.1951.1 vs. uniprot
Match: D7FZ84_ECTSI (GMP synthase (glutamine-hydrolyzing) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ84_ECTSI)

HSP 1 Score: 241 bits (616), Expect = 1.310e-76
Identity = 114/119 (95.80%), Postives = 119/119 (100.00%), Query Frame = 1 
Query:    1 QDEVRSLGMALGMDEFSVWRHPFPGPGLAIRCLAPLNEENLSMAREADAIMIEELNRADVYRDIGQAFAVLLPVQSVGVMGDCRTYEKVCAIRCVQTTDYMTADWYHMPYEILGRISNR 357
            +DEVRSLGMALGMDEFSVWRHPFPGPGLAIRCLAPL+EENLSMAREADAIMIEELNRA+VYRDIGQAFAVLLPV+SVGVMGDCRTYEKVCAIRCVQTTDYMTADWYHMPYE+LGRISNR
Sbjct:  290 KDEVRSLGMALGMDEFSVWRHPFPGPGLAIRCLAPLSEENLSMAREADAIMIEELNRANVYRDIGQAFAVLLPVKSVGVMGDCRTYEKVCAIRCVQTTDYMTADWYHMPYEVLGRISNR 408
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12274.1951.1 vs. uniprot
Match: A0A835ZID4_9STRA (GMP synthase (glutamine-hydrolyzing) n=3 Tax=cellular organisms TaxID=131567 RepID=A0A835ZID4_9STRA)

HSP 1 Score: 219 bits (557), Expect = 9.940e-67
Identity = 102/119 (85.71%), Postives = 112/119 (94.12%), Query Frame = 1 
Query:    1 QDEVRSLGMALGMDEFSVWRHPFPGPGLAIRCLAPLNEENLSMAREADAIMIEELNRADVYRDIGQAFAVLLPVQSVGVMGDCRTYEKVCAIRCVQTTDYMTADWYHMPYEILGRISNR 357
            +DEVR+LG+ALG++EFSVWRHPFPGPGLAIRCL  LN ENL M READAI+IEELNRA +YR+IGQAFAVLLPV+SVGVMGD RTYEKVCAIRCVQTTDYMTADWYHMPYE+LGRISNR
Sbjct:  389 KDEVRTLGIALGVEEFSVWRHPFPGPGLAIRCLGELNMENLDMLREADAILIEELNRAGIYREIGQAFAVLLPVKSVGVMGDFRTYEKVCAIRCVQTTDYMTADWYHMPYEVLGRISNR 507
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12274.1951.1 vs. uniprot
Match: A0A7S2BPD2_9STRA (GMP synthase (glutamine-hydrolyzing) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BPD2_9STRA)

HSP 1 Score: 192 bits (488), Expect = 1.240e-60
Identity = 92/119 (77.31%), Postives = 101/119 (84.87%), Query Frame = 1 
Query:    1 QDEVRSLGMALGMDEFSVWRHPFPGPGLAIRCLAPLNEENLSMAREADAIMIEELNRADVYRDIGQAFAVLLPVQSVGVMGDCRTYEKVCAIRCVQTTDYMTADWYHMPYEILGRISNR 357
            +DEVR LGM LG+ E SVWRHPFPGPGLAIR L  L++E L M READAIMIEEL++   YR IGQAF VLLPV+SVGVMGD RTYE VCA+RCVQTTDYMTADWYHMPYE+LG ISNR
Sbjct:   27 KDEVRELGMVLGVSEESVWRHPFPGPGLAIRVLGELSKERLDMLREADAIMIEELHKNGQYRLIGQAFVVLLPVKSVGVMGDGRTYENVCAVRCVQTTDYMTADWYHMPYEVLGTISNR 145
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12274.1951.1 vs. uniprot
Match: A0A6U0XG24_9STRA (GMP synthase (glutamine-hydrolyzing) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U0XG24_9STRA)

HSP 1 Score: 198 bits (503), Expect = 1.990e-58
Identity = 93/119 (78.15%), Postives = 105/119 (88.24%), Query Frame = 1 
Query:    1 QDEVRSLGMALGMDEFSVWRHPFPGPGLAIRCLAPLNEENLSMAREADAIMIEELNRADVYRDIGQAFAVLLPVQSVGVMGDCRTYEKVCAIRCVQTTDYMTADWYHMPYEILGRISNR 357
            +DEVR LG+ LG+   SVWRHPFPGPGLAIR L P+++E L M READAI+IEEL+RA+VYR IGQAFAVLLP +SVGVMGD RTYE VCAIRCVQTTDYMTADW+HMPYE+LGRISNR
Sbjct:  426 KDEVRELGVVLGVSSESVWRHPFPGPGLAIRVLGPIDKEKLDMLREADAILIEELHRAEVYRAIGQAFAVLLPCKSVGVMGDGRTYEHVCAIRCVQTTDYMTADWFHMPYEVLGRISNR 544
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12274.1951.1 vs. uniprot
Match: A0A7S0C7X0_9STRA (GMP synthase (glutamine-hydrolyzing) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C7X0_9STRA)

HSP 1 Score: 180 bits (457), Expect = 2.710e-55
Identity = 81/119 (68.07%), Postives = 102/119 (85.71%), Query Frame = 1 
Query:    1 QDEVRSLGMALGMDEFSVWRHPFPGPGLAIRCLAPLNEENLSMAREADAIMIEELNRADVYRDIGQAFAVLLPVQSVGVMGDCRTYEKVCAIRCVQTTDYMTADWYHMPYEILGRISNR 357
            +DEVR LGMA+G+DEFSVWRHPFPGPGLAIR L  +  E +++ + AD IMI+EL  AD+YR IGQAF VLLPV+SVGVMGD RTYE V A+RCV+TTDYMTAD++H+PY+++G++SNR
Sbjct:   73 KDEVRELGMAMGIDEFSVWRHPFPGPGLAIRILGEVTAERVAILQHADDIMIQELRAADLYRQIGQAFVVLLPVKSVGVMGDGRTYENVAAVRCVETTDYMTADFFHLPYDVMGKMSNR 191
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12274.1951.1 vs. uniprot
Match: A0A6V1SBM3_HETAK (GMP synthase (glutamine-hydrolyzing) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SBM3_HETAK)

HSP 1 Score: 189 bits (479), Expect = 4.580e-55
Identity = 87/119 (73.11%), Postives = 103/119 (86.55%), Query Frame = 1 
Query:    1 QDEVRSLGMALGMDEFSVWRHPFPGPGLAIRCLAPLNEENLSMAREADAIMIEELNRADVYRDIGQAFAVLLPVQSVGVMGDCRTYEKVCAIRCVQTTDYMTADWYHMPYEILGRISNR 357
            +DEVR+LG+ALG++E SVWRHPFPGPGLAIR L  ++ E   + R+ADAI+IEEL+RA +YR+IGQAF VLLP +SVGVMGD RTYE VCA+RCVQTTDYMTADWYHMPY +LG ISNR
Sbjct:  405 KDEVRTLGIALGIEEESVWRHPFPGPGLAIRILGGVSRERADILRQADAILIEELHRAGIYREIGQAFCVLLPCKSVGVMGDGRTYENVCAVRCVQTTDYMTADWYHMPYSVLGIISNR 523
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12274.1951.1 vs. uniprot
Match: A0A7S2UVV2_9STRA (GMP synthase (glutamine-hydrolyzing) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVV2_9STRA)

HSP 1 Score: 186 bits (472), Expect = 5.220e-54
Identity = 86/119 (72.27%), Postives = 102/119 (85.71%), Query Frame = 1 
Query:    1 QDEVRSLGMALGMDEFSVWRHPFPGPGLAIRCLAPLNEENLSMAREADAIMIEELNRADVYRDIGQAFAVLLPVQSVGVMGDCRTYEKVCAIRCVQTTDYMTADWYHMPYEILGRISNR 357
            +DEVRSLG+ALG++E SVWRHPFPGPGLAIR L PLN+  L   R AD I+I+EL++ D+Y+ IGQAF VLLP +SVGVMGD RTYE VCA+RCVQTTDYMTADW+HMPYE++G ISNR
Sbjct:  409 KDEVRSLGLALGIEEASVWRHPFPGPGLAIRVLGPLNQGYLDTLRLADDILIQELHKHDLYKKIGQAFCVLLPCKSVGVMGDGRTYENVCAVRCVQTTDYMTADWFHMPYEVMGIISNR 527
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12274.1951.1 vs. uniprot
Match: A0A7S2CTG2_9STRA (GMP synthase (glutamine-hydrolyzing) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CTG2_9STRA)

HSP 1 Score: 185 bits (470), Expect = 9.090e-54
Identity = 88/119 (73.95%), Postives = 100/119 (84.03%), Query Frame = 1 
Query:    1 QDEVRSLGMALGMDEFSVWRHPFPGPGLAIRCLAPLNEENLSMAREADAIMIEELNRADVYRDIGQAFAVLLPVQSVGVMGDCRTYEKVCAIRCVQTTDYMTADWYHMPYEILGRISNR 357
            +DEVRSLG+ LG+ E SVWRHPFPGPGLAIR L  +    L M R+AD IMI+EL+ A+VYR IGQAF VLLPV+SVGVMGD RTYE VCA+RCVQTTDYMTADWYHMPYE+LG IS+R
Sbjct:  402 KDEVRSLGVVLGIREESVWRHPFPGPGLAIRVLGEVTHPRLEMLRQADDIMIQELHNANVYRLIGQAFVVLLPVKSVGVMGDGRTYENVCAVRCVQTTDYMTADWYHMPYEVLGTISSR 520
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12274.1951.1 vs. uniprot
Match: H3GA45_PHYRM (GMP synthase (glutamine-hydrolyzing) n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GA45_PHYRM)

HSP 1 Score: 179 bits (453), Expect = 2.070e-51
Identity = 86/119 (72.27%), Postives = 96/119 (80.67%), Query Frame = 1 
Query:    1 QDEVRSLGMALGMDEFSVWRHPFPGPGLAIRCLAPLNEENLSMAREADAIMIEELNRADVYRDIGQAFAVLLPVQSVGVMGDCRTYEKVCAIRCVQTTDYMTADWYHMPYEILGRISNR 357
            +DEVR LGMALG+DE SVWRHPFPGPGLAIR L  +  E L   R AD+I IEEL  +D Y+  GQAF VLLPV+SVGVMGD RTYEKV AIR V T+DYMTADWYHMPYE+LGR+SNR
Sbjct:  384 KDEVRELGMALGIDEPSVWRHPFPGPGLAIRVLGEITPEALETLRHADSIFIEELRNSDHYKTTGQAFCVLLPVKSVGVMGDGRTYEKVVAIRAVSTSDYMTADWYHMPYEVLGRMSNR 502
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12274.1951.1 vs. uniprot
Match: A0A2D4CHB3_PYTIN (GMP synthase (glutamine-hydrolyzing) n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4CHB3_PYTIN)

HSP 1 Score: 178 bits (452), Expect = 2.800e-51
Identity = 85/119 (71.43%), Postives = 97/119 (81.51%), Query Frame = 1 
Query:    1 QDEVRSLGMALGMDEFSVWRHPFPGPGLAIRCLAPLNEENLSMAREADAIMIEELNRADVYRDIGQAFAVLLPVQSVGVMGDCRTYEKVCAIRCVQTTDYMTADWYHMPYEILGRISNR 357
            +DEVR LGMALG+DE SVWRHPFPGPGLAIR L  + +E L   R+ADAI +EEL  +  Y+  GQAF VLLPV+SVGVMGD RTYEKV AIR V T+DYMTADWYHMPYE+LGR+SNR
Sbjct:  382 KDEVRQLGMALGIDEESVWRHPFPGPGLAIRVLGEITKEALDTLRQADAIFLEELRNSGHYKTTGQAFCVLLPVKSVGVMGDGRTYEKVVAIRAVSTSDYMTADWYHMPYEVLGRMSNR 500
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12274.1951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ84_ECTSI1.310e-7695.80GMP synthase (glutamine-hydrolyzing) n=1 Tax=Ectoc... [more]
A0A835ZID4_9STRA9.940e-6785.71GMP synthase (glutamine-hydrolyzing) n=3 Tax=cellu... [more]
A0A7S2BPD2_9STRA1.240e-6077.31GMP synthase (glutamine-hydrolyzing) n=1 Tax=Flore... [more]
A0A6U0XG24_9STRA1.990e-5878.15GMP synthase (glutamine-hydrolyzing) n=1 Tax=Rhizo... [more]
A0A7S0C7X0_9STRA2.710e-5568.07GMP synthase (glutamine-hydrolyzing) n=1 Tax=Probo... [more]
A0A6V1SBM3_HETAK4.580e-5573.11GMP synthase (glutamine-hydrolyzing) n=1 Tax=Heter... [more]
A0A7S2UVV2_9STRA5.220e-5472.27GMP synthase (glutamine-hydrolyzing) n=1 Tax=Fibro... [more]
A0A7S2CTG2_9STRA9.090e-5473.95GMP synthase (glutamine-hydrolyzing) n=1 Tax=Dicty... [more]
H3GA45_PHYRM2.070e-5172.27GMP synthase (glutamine-hydrolyzing) n=1 Tax=Phyto... [more]
A0A2D4CHB3_PYTIN2.800e-5171.43GMP synthase (glutamine-hydrolyzing) n=2 Tax=Pythi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12274contigH-canaliculatus_F_contig12274:454..3389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score229.9
Seed ortholog evalue5.7e-58
Seed eggNOG ortholog2880.D7FZ84
Preferred nameGMPS
KEGG rclassRC00010,RC00204
KEGG koko:K01951,ko:K04257
KEGG ReactionR01230,R01231,R08244
KEGG Pathwayko00230,ko00983,ko01100,ko04740,map00230,map00983,map01100,map04740
KEGG ModuleM00050
GOsGO:0000902,GO:0000904,GO:0001101,GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005700,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006144,GO:0006163,GO:0006164,GO:0006177,GO:0006325,GO:0006464,GO:0006508,GO:0006520,GO:0006541,GO:0006543,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006928,GO:0006935,GO:0006996,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0008047,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009063,GO:0009064,GO:0009065,GO:0009112,GO:0009113,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009605,GO:0009653,GO:0009893,GO:0009987,GO:0010033,GO:0010243,GO:0010604,GO:0010952,GO:0016043,GO:0016054,GO:0016504,GO:0016569,GO:0016570,GO:0016578,GO:0016579,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019222,GO:0019438,GO:0019538,GO:0019637,GO:0019693,GO:0019752,GO:0019899,GO:0022008,GO:0030030,GO:0030154,GO:0030162,GO:0030182,GO:0030234,GO:0031175,GO:0031323,GO:0031325,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0032991,GO:0034404,GO:0034641,GO:0034654,GO:0035800,GO:0036211,GO:0040011,GO:0042221,GO:0042278,GO:0042330,GO:0042440,GO:0042451,GO:0042455,GO:0042493,GO:0042802,GO:0043085,GO:0043170,GO:0043200,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0043436,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045862,GO:0046037,GO:0046112,GO:0046128,GO:0046129,GO:0046148,GO:0046390,GO:0046395,GO:0046483,GO:0048468,GO:0048518,GO:0048522,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051276,GO:0051336,GO:0051345,GO:0052547,GO:0055086,GO:0060255,GO:0061134,GO:0061564,GO:0065007,GO:0065009,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0072521,GO:0072522,GO:0080090,GO:0090407,GO:0097485,GO:0098772,GO:0120036,GO:0120039,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901367,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901657,GO:1901659,GO:1901698,GO:1901700,GO:2000152,GO:2000158
EggNOG free text desc.GMP synthase (glutamine-hydrolyzing) activity
EggNOG OGsCOG0519@1,KOG1622@2759
Ec32 ortholog descriptionGMP synthase (glutamine-hydrolyzing)
Ec32 orthologEc-13_002710.1
EC6.3.5.2
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko04030
Hectar predicted targeting categoryother localisation
Exons3
Model size363
Cds size339
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12274.1951.1prot_H-canaliculatus_F_contig12274.1951.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12274 478..3389 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928943.4675872-UTR-H-canaliculatus_F_contig12274:453..4771622928943.4675872-UTR-H-canaliculatus_F_contig12274:453..477Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12274 454..477 +
1696845622.119383-UTR-H-canaliculatus_F_contig12274:453..4771696845622.119383-UTR-H-canaliculatus_F_contig12274:453..477Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12274 454..477 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928943.484396-CDS-H-canaliculatus_F_contig12274:477..5911622928943.484396-CDS-H-canaliculatus_F_contig12274:477..591Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12274 478..591 +
1696845623.1695259-CDS-H-canaliculatus_F_contig12274:477..5911696845623.1695259-CDS-H-canaliculatus_F_contig12274:477..591Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12274 478..591 +
1622928943.497621-CDS-H-canaliculatus_F_contig12274:2035..21481622928943.497621-CDS-H-canaliculatus_F_contig12274:2035..2148Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12274 2036..2148 +
1696845623.1788702-CDS-H-canaliculatus_F_contig12274:2035..21481696845623.1788702-CDS-H-canaliculatus_F_contig12274:2035..2148Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12274 2036..2148 +
1622928943.5168312-CDS-H-canaliculatus_F_contig12274:3277..33891622928943.5168312-CDS-H-canaliculatus_F_contig12274:3277..3389Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12274 3278..3389 +
1696845623.1882753-CDS-H-canaliculatus_F_contig12274:3277..33891696845623.1882753-CDS-H-canaliculatus_F_contig12274:3277..3389Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12274 3278..3389 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12274.1951.1

>prot_H-canaliculatus_F_contig12274.1951.1 ID=prot_H-canaliculatus_F_contig12274.1951.1|Name=mRNA_H-canaliculatus_F_contig12274.1951.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=113bp
MALGMDEFSVWRHPFPGPGLAIRCLAPLNEENLSMAREADAIMIEELNRA
DVYRDIGQAFAVLLPVQSVGVMGDCRTYEKVCAIRCVQTTDYMTADWYHM
PYEILGRISNRWV
back to top

mRNA from alignment at H-canaliculatus_F_contig12274:454..3389+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12274.1951.1 ID=mRNA_H-canaliculatus_F_contig12274.1951.1|Name=mRNA_H-canaliculatus_F_contig12274.1951.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2936bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12274:454..3389+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGACGAGGTGCGTTCGTTGGGGATGGCCCTCGGCATGGACGAGTTCAG
CGTCTGGCGCCACCCTTTCCCGGGGCCGGGGCTCGCCATCCGATGCCTGG
CACCGCTCAACGAGGAGAACCTCTCCATGGCAAGAGAGGTACGCACGGCC
TGCCTGTGTGCCCGCCCGCCCGCCTTGCCTGCCTGCCCGCCCTCCGAATA
TTTGTAGATAAAGTCGCATGCGTAGAGGTGGTGGGCTTTGACGGTGGCTG
CCTTGGTTGTGGTGGTGGTGGTGTCGTTGTTCGTGCTGTTTTGGGGTTCC
GTCGGTGGCGAGGCGCGCGAGGGAAGCGAGACTTCTGGTCTCCTTTCTTT
CCCAAGAGGGGGGGAATGAGACTCGATCTGCTCGCACAGTGGATCGCATT
TTTTGGAAAGCAAGCGGCCTCTCCGCCGCTCAGATGTAAAAAGGCCTCTG
AGGTTGTCCTGGCAACACGTTTTGGGCGCGTTCGATGGTGAAACAACCGC
CATCCTCCAGCACAAAACACAGTCTGTGGACGTCTGTGGGTGCCTCTCAG
CAACGACCAACCGCCTCGGCGTTCGTTTCGGGGCGTTTGAAGAAGGGCTC
GGTGTTGCAGCAGCGCTAGAATGTGCAGAAAAACGAGGGTTTTAAGGGTT
GTTCGCCCGCTTGCCACACCATGAGGTTTCCACACGAGTTGCCTGGGACT
CGAGATCGAGGCCAGGGTCACGTCCGTAGTAGCAAAGCTGAGCCCTCTCA
AGCACACACGCTGCTGCAGCAGATACGAGCAGCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
GATGCTCATTGCTCTGCCGGCCGCTTGAGATGCGCGTCTGCGTCGAATGG
AAGAAGTGCGCACCGTAGGTGCTTCGTGTGATTCTGCGCATTTTCCACCA
GGCAAAAACAATCGAAACTGTTCGGCATTTTCGACACGGGTACACCGGGC
AAAAGTCTCTCCGACGCGCCAACAGAATTGCCCCGCAAAACAGCCACAAG
ACGCGTCCCATACCTTATTTTTAGACCGCGGAAAGTAGCCAAATTCCTGG
TTCGTTGTTGCACTTCCCCCTCGTCGTCTCCGAACTTTTCTGCGTGCGTC
CTACACTTTCGACTTCTTTCTTGTAGTGTTTTTTCGTGTCGCTGACGCCT
GTTGCGGCCGTAGAGAAGGGGGTTTAGACGAGGCTGGGTCTACCATACCC
CAGACGATGTGTTGTGTACGCCCCCCCCTGGTAGGGGACGGCCGCGGATT
GAGCTTTCGCGACGGGCCTTCGGGGATGGGAGCTTAACGAGAGCATCAAA
CCCGGCAACAGTACCCCCGCCACCACCATCAGCCCGGCCGCCGCCGCCGC
CTACGACAGCAACGACAGCAGTGAACCCCCCTCCACCCCCGACGTCTCTG
TCTCTCTCTCTGTCTGTTCCACCCCCGACGTGTCTCTCTCTCTGTCTGTT
TCTGTCTGTCTGTTTCTGTCTGTCTGTCTGTCTGTCTGTCTCTCTCTCTC
TCTCTTGCTCTCTCTCTTATCGCCCGATCCAGGCGGACGCCATCATGATA
GAGGAGCTTAACCGCGCCGACGTGTACCGGGATATCGGACAGGCGTTCGC
CGTGCTGCTGCCCGTCCAGAGCGTGGGGGTCATGGGAGACTGCAGGTACG
AACGAGCGCTCGCACGCCGGGAGGGAGGAAAGGCAGCGTTGCCGCCGCCG
CCGCCGCCGCCGTGTATGCATGCTCCTGCGTTCTGTCGCTCGAAGAAGCG
GTGTTGGCCCTGCTCCGCGTCGGGAGGTGTTCCTATCTCCTGGCGGATGG
TCCGAGAAAGAAAATAATCGTCACCGTTGGAGCCCAATAGAAACCTCGAG
GAACGTCTTACACGGCGTTGTTGAGGGTCGCTGGCCGAGAGTTGGTTGGG
TATGTGTCCGAGTCAAACACATACACTTTCCATAGGAAATAATCAACAAC
ACCAAAGGAATGCCCTCCGCTGAGCCAAAATTTAAAGCGACTCAGGAGGA
TTTTTGTTGAATTCATTACGGGGAGGGTTCGCTCAGTGCGGTGGAAAAGC
ATTTCATGGTGTCAGCCGAGGCATTCTTTGCTTGTCAGGAGAGACAGATG
GCCGGCGATACACTTGTGTTTTGAACCGATCCTTATCCTTCCGTCGGGCC
GATGACATGGCGTAGTTGTTGCTGGCGGAGTTGGGTGTGCCGAGGAAGGC
CTGGGTTGGACACTTTGTAGGCGTGGCGCGGGGCGTTTTTCGCGAGGGCG
ATCGTGAAGCTGTTCGCGCCGCCGAAGCCCCCCCCCCCCCCCCCCCCCCC
CCCCCGTGGAGTTTAATCGATGCTGCTCTTGCTCCTCTTCTTCTTGCAAT
TTTTTGCTGCTGGTGATGCTGCTGGTGATGCTGATGCTGATGCTGATGCT
GTTGCTGTTGCTGTTGCTGTTGAGAGTCTTGCTGTTGCTTTTTCGAGAAA
GACACGGCAACACCGTAGAAACTCCTCCTGAGGCAATGTCGTATGAGATG
CACCTCGAGGTTTCTGTCGAGTTCCCAACAGTGTTGCTTTGTGCTTCTTC
AGCTGCTCCTACGAACCGCCGCGGCCCCAGATTCTGCGTCTGATACCGAT
GCGGCTGCTGCTACGACTCGCGATGTCGCCTCTTTTTTTTCCCTGTGTTT
CGGACGCTGTTGCTGCTGCCGCGGATCTTGATTACATACACGTACTCAAG
CTGGGTCTCGCGATGCCGGTACCCTTTACACAACCTGCTTCGTTCCTCTA
TTTTTTTTCTTTTTTTTTACGCAGAACGTACGAGAAGGTCTGTGCGATTC
GCTGCGTGCAGACTACGGACTACATGACGGCCGATTGGTATCACATGCCG
TACGAAATTTTGGGCAGGATCTCGAATAGGTGGGTG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12274:454..3389+

>mRNA_H-canaliculatus_F_contig12274.1951.1 ID=mRNA_H-canaliculatus_F_contig12274.1951.1|Name=mRNA_H-canaliculatus_F_contig12274.1951.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=678bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12274:454..3389+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCCCTCGGCATGGACGAGTTCAGCGTCTGGCGCCACCCTTTCCCGGG
GCCGGGGCTCGCCATCCGATGCCTGGCACCGCTCAACGAGGAGAACCTCT
CCATGGCAAGAGAGATGGCCCTCGGCATGGACGAGTTCAGCGTCTGGCGC
CACCCTTTCCCGGGGCCGGGGCTCGCCATCCGATGCCTGGCACCGCTCAA
CGAGGAGAACCTCTCCATGGCAAGAGAGGCGGACGCCATCATGATAGAGG
AGCTTAACCGCGCCGACGTGTACCGGGATATCGGACAGGCGTTCGCCGTG
CTGCTGCCCGTCCAGAGCGTGGGGGTCATGGGAGACTGCAGGCGGACGCC
ATCATGATAGAGGAGCTTAACCGCGCCGACGTGTACCGGGATATCGGACA
GGCGTTCGCCGTGCTGCTGCCCGTCCAGAGCGTGGGGGTCATGGGAGACT
GCAGAACGTACGAGAAGGTCTGTGCGATTCGCTGCGTGCAGACTACGGAC
TACATGACGGCCGATTGGTATCACATGCCGTACGAAATTTTGGGCAGGAT
CTCGAATAGGTGGGTGAACGTACGAGAAGGTCTGTGCGATTCGCTGCGTG
CAGACTACGGACTACATGACGGCCGATTGGTATCACATGCCGTACGAAAT
TTTGGGCAGGATCTCGAATAGGTGGGTG
back to top