mRNA_H-canaliculatus_F_contig12272.1950.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12272.1950.1
Unique NamemRNA_H-canaliculatus_F_contig12272.1950.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12272.1950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12272contigH-canaliculatus_F_contig12272:2434..3170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size737
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12272.1950.1prot_H-canaliculatus_F_contig12272.1950.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12272 2580..2948 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928943.3805628-UTR-H-canaliculatus_F_contig12272:2433..25791622928943.3805628-UTR-H-canaliculatus_F_contig12272:2433..2579Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12272 2434..2579 +
1696845622.0878336-UTR-H-canaliculatus_F_contig12272:2433..25791696845622.0878336-UTR-H-canaliculatus_F_contig12272:2433..2579Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12272 2434..2579 +
1622928943.411669-UTR-H-canaliculatus_F_contig12272:2948..31701622928943.411669-UTR-H-canaliculatus_F_contig12272:2948..3170Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12272 2949..3170 +
1696845622.1050856-UTR-H-canaliculatus_F_contig12272:2948..31701696845622.1050856-UTR-H-canaliculatus_F_contig12272:2948..3170Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12272 2949..3170 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928943.3973567-CDS-H-canaliculatus_F_contig12272:2579..29481622928943.3973567-CDS-H-canaliculatus_F_contig12272:2579..2948Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12272 2580..2948 +
1696845622.096572-CDS-H-canaliculatus_F_contig12272:2579..29481696845622.096572-CDS-H-canaliculatus_F_contig12272:2579..2948Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12272 2580..2948 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12272.1950.1

>prot_H-canaliculatus_F_contig12272.1950.1 ID=prot_H-canaliculatus_F_contig12272.1950.1|Name=mRNA_H-canaliculatus_F_contig12272.1950.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=123bp
MLMHGARTAATHALIKQTARAATIRAVFEQRATSTRLSSSGGRGGVNYSL
SRRLSTSGISTEWEGERQSGSGGDELQRGLSPEEVRERDVETERDREMRR
RRDKVRRYLLSGDTALPQRSDG*
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mRNA from alignment at H-canaliculatus_F_contig12272:2434..3170+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12272.1950.1 ID=mRNA_H-canaliculatus_F_contig12272.1950.1|Name=mRNA_H-canaliculatus_F_contig12272.1950.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=737bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12272:2434..3170+ (Hapterophycus canaliculatus Oshoro5f female)
CGTGAAAGTGTTACCAATACCCATATACCCACCCAAACTTGAGACATCAC
GATGCCCCACGGATGCTGCCGTTCTACTGCTGAGCTGTCACCGTTTCCAG
CTGACTCAACGATTTGAAGCTCACAAGTCGCCGTCGTTACAATAAGATGC
TGATGCACGGGGCGAGAACAGCCGCCACCCACGCTTTGATTAAACAAACA
GCTCGGGCGGCAACAATTCGCGCCGTTTTCGAGCAGCGCGCTACGTCAAC
CCGACTGAGCAGCAGTGGCGGCCGCGGCGGCGTAAATTATAGCTTGAGCA
GGCGTCTTAGCACCAGCGGCATATCTACGGAGTGGGAGGGGGAGAGGCAG
TCAGGTTCCGGCGGAGACGAGCTACAGCGTGGCCTCAGCCCAGAGGAGGT
GAGAGAGAGAGACGTCGAGACAGAGAGAGACAGAGAGATGCGACGGAGAA
GAGATAAGGTCCGACGTTATTTGCTTTCTGGAGATACTGCTCTGCCGCAG
CGATCTGACGGGTAAAGCATCAAGCGCTGCCAGGCAAGCGCCGGTTGCCG
GACCACACCCCCACTGCAAGCACGACAAGACGATACAAGCTCCGAGTCAG
CAGCGTTCCGGGTGCAGCCTCGGGGGGCAAGAAGCGGCGAAAGCGCAGCG
TAAGCATGCGACCCTCTGTTGGGCAAGCCGCGGAGAGTACCTGCCGAGAG
TCGATCCAAGGTTGGAAGTGCGCCGCCAGCTGCAAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12272:2434..3170+

>mRNA_H-canaliculatus_F_contig12272.1950.1 ID=mRNA_H-canaliculatus_F_contig12272.1950.1|Name=mRNA_H-canaliculatus_F_contig12272.1950.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=738bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12272:2434..3170+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTGATGCACGGGGCGAGAACAGCCGCCACCCACGCTTTGATTAAACA
AACAGCTCGGGCGGCAACAATTCGCGCCGTTTTCGAGCAGCGCGCTACGT
CAACCCGACTGAGCAGCAGTGGCGGCCGCGGCGGCGTAAATTATAGCTTG
AGCAGGCGTCTTAGCACCAGCGGCATATCTACGGAGTGGGAGGGGGAGAG
GCAGTCAGGTTCCGGCGGAGACGAGCTACAGCGTGGCCTCAGCCCAGAGG
AGGTGAGAGAGAGAGACGTCGAGACAGAGAGAGACAGAGAGATGCGACGG
AGAAGAGATAAGGTCCGACGTTATTTGCTTTCTGGAGATACTGCTCTGCC
GCAGCGATCTGACGGGTAAATGCTGATGCACGGGGCGAGAACAGCCGCCA
CCCACGCTTTGATTAAACAAACAGCTCGGGCGGCAACAATTCGCGCCGTT
TTCGAGCAGCGCGCTACGTCAACCCGACTGAGCAGCAGTGGCGGCCGCGG
CGGCGTAAATTATAGCTTGAGCAGGCGTCTTAGCACCAGCGGCATATCTA
CGGAGTGGGAGGGGGAGAGGCAGTCAGGTTCCGGCGGAGACGAGCTACAG
CGTGGCCTCAGCCCAGAGGAGGTGAGAGAGAGAGACGTCGAGACAGAGAG
AGACAGAGAGATGCGACGGAGAAGAGATAAGGTCCGACGTTATTTGCTTT
CTGGAGATACTGCTCTGCCGCAGCGATCTGACGGGTAA
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