mRNA_H-canaliculatus_F_contig1225.1933.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1225.1933.1
Unique NamemRNA_H-canaliculatus_F_contig1225.1933.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1225.1933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1225contigH-canaliculatus_F_contig1225:26347..28247 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size1050
Cds size1050
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928940.9384308-CDS-H-canaliculatus_F_contig1225:26346..263851622928940.9384308-CDS-H-canaliculatus_F_contig1225:26346..26385Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1225 26347..26385 -
1696845620.951826-CDS-H-canaliculatus_F_contig1225:26346..263851696845620.951826-CDS-H-canaliculatus_F_contig1225:26346..26385Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1225 26347..26385 -
1622928940.9492054-CDS-H-canaliculatus_F_contig1225:27236..282471622928940.9492054-CDS-H-canaliculatus_F_contig1225:27236..28247Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1225 27237..28247 -
1696845620.9698932-CDS-H-canaliculatus_F_contig1225:27236..282471696845620.9698932-CDS-H-canaliculatus_F_contig1225:27236..28247Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1225 27237..28247 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1225.1933.1prot_H-canaliculatus_F_contig1225.1933.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1225 26347..28247 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1225.1933.1

>prot_H-canaliculatus_F_contig1225.1933.1 ID=prot_H-canaliculatus_F_contig1225.1933.1|Name=mRNA_H-canaliculatus_F_contig1225.1933.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=350bp
GSSSSPGAAAAGAGVVLAGAATAPAAVAPAVGSVVAGAAGAGRKAAEAKA
GPLQGRQERAHEEEQAKALGEVTAAMAATRIAPAPAASAAAPVPPAAAVA
ATAAAAASSKREQLMNMIGAGKPSTKASSAPAGAVDQTGGAPQPQGTQQQ
QQQQQQQQRVNKRHPAGASAGPQPQPQQQALPPAMTVATASAAGRGGPMP
DGSAAPPAPLDGLLPPPPPPTGGGAEGDAMRALWHQQRMLEAVGQQQRHQ
QILQFQQQQYHLQQQHHQHHQHLLQQQHQHVFQQQQRLHQQIQLQQQQQQ
QQQQFGQQGVGTTAAFLPVGYSHGGIMPQQQHQLGQQGLLSYPRPLQRQQ
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mRNA from alignment at H-canaliculatus_F_contig1225:26347..28247-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1225.1933.1 ID=mRNA_H-canaliculatus_F_contig1225.1933.1|Name=mRNA_H-canaliculatus_F_contig1225.1933.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1901bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1225:26347..28247- (Hapterophycus canaliculatus Oshoro5f female)
GGCAGCAGCTCTTCGCCGGGCGCTGCTGCGGCGGGCGCCGGGGTGGTTCT
TGCTGGTGCCGCAACTGCGCCCGCTGCTGTTGCTCCGGCTGTTGGTAGTG
TGGTAGCAGGAGCGGCCGGTGCAGGAAGAAAAGCTGCTGAGGCGAAAGCG
GGGCCGCTGCAGGGCCGGCAGGAGCGAGCGCACGAAGAGGAGCAGGCGAA
GGCTCTTGGCGAGGTTACCGCTGCGATGGCGGCGACAAGGATCGCGCCGG
CGCCAGCAGCCTCGGCCGCCGCGCCTGTCCCTCCTGCGGCTGCTGTGGCT
GCTACGGCTGCTGCCGCCGCCAGCAGCAAAAGGGAGCAGCTGATGAACAT
GATTGGGGCAGGGAAACCGTCGACGAAAGCATCCAGTGCACCTGCGGGGG
CGGTGGATCAAACGGGCGGAGCCCCTCAACCCCAGGGGACGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCGAGTGAATAAAAGACATCCCGCGGG
CGCTTCCGCAGGGCCGCAACCGCAGCCGCAGCAACAGGCTTTGCCGCCAG
CAATGACGGTAGCCACGGCATCTGCGGCTGGAAGAGGAGGACCGATGCCT
GACGGTAGTGCTGCCCCTCCCGCTCCCCTCGACGGCCTTCTCCCCCCTCC
TCCCCCGCCCACAGGAGGCGGGGCGGAAGGCGACGCGATGCGGGCTCTGT
GGCACCAGCAGCGTATGCTGGAGGCGGTGGGGCAGCAGCAGCGGCACCAG
CAAATCCTCCAATTCCAGCAGCAGCAGTACCATCTCCAGCAGCAGCATCA
TCAACATCATCAGCACCTCTTACAGCAGCAGCATCAGCACGTGTTTCAGC
AGCAGCAGCGGCTTCACCAACAAATACAACTTCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGTTTGGGCAACAAGGAGTAGGTACGACGGCGGCATTTCT
GCCCGTCGGCTACTCTCACGGAGGGATCATGCCGCAGCAGCAGCACCAGC
TCGGCCAACAGGTACATACGCAGTAGCTGCGTCGGAGGAGTTATTCAGTG
TCGTTGCTGGGAAGGCCAGCGTGCCCTTGTCGCCCGTAGATGTTTCTTAT
GTTTTAAGTGCCCGAGTTGTGGCCCAGATGGCTTGTGCGATCGGTTGAGG
CAAGGTTCTGGTTCCGTCTGGTGCTTCAGCCCGTGGTGTGTTTTGGTACA
CGGTTGCAACCGGAATGCCCTGCCCTTTATCTCTCTCTCTTAAGCCACTC
ACCGCCGAGCAGGAGGATGGGATAGGGTAGGGAGAGGATCAGGATCAGCA
AGAATTCGTGTGGACGAAATATCATAGATGAAATATCAGCTTCGCAGAGA
ACGCCCCCATACTGGTCTTATCTCTATGGCGGTTTTGAGGAGAGATGATG
CTGCTTCTCGGAAGGGATTCGTGGTCAGCAGCGGTCAAACGACTCAGAGA
AGGCGAGCAACAGACGAGTGTGATAACCCCCACAACTCCCCCCCCCCCCG
GGAAGCGCCGCTTCTTCTGAACCCAAAAGGGTGCTGTTCAACGGTCTCGA
TCAACTCGAAGGTCAGGCACAGTTCTGCAGTGGCAGCAGGCCACACAGGT
TGACACAAGGAAGGCCACCTTTTCGACTGTTTGTTTGCCCTCGACATTTC
CCATACTTTTTCAGCCTCATCAGTGTGAGGTGTAAAAGATATATAAACCT
GTCGTGTCCGCTGCAAGGGCATCGAGCTTCCCCGATACCTGTCACCCGTT
CGGTTCTTCCTCCCCCGATCCGCCTGCACTAACCCCACCGCGACCTGTTC
AACCGCCACCACTCGCGCTCTCTCCCACCACACCGACGTCGCCATCTCCT
CTTCTCCAGCAGGGCTTGCTAAGCTACCCGCGCCCGCTGCAGCGGCAACA
G
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1225:26347..28247-

>mRNA_H-canaliculatus_F_contig1225.1933.1 ID=mRNA_H-canaliculatus_F_contig1225.1933.1|Name=mRNA_H-canaliculatus_F_contig1225.1933.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2100bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1225:26347..28247- (Hapterophycus canaliculatus Oshoro5f female)
GGCAGCAGCTCTTCGCCGGGCGCTGCTGCGGCGGGCGCCGGGGTGGTTCT
TGCTGGTGCCGCAACTGCGCCCGCTGCTGTTGCTCCGGCTGTTGGTAGTG
TGGTAGCAGGAGCGGCCGGTGCAGGAAGAAAAGCTGCTGAGGCGAAAGCG
GGGCCGCTGCAGGGCCGGCAGGAGCGAGCGCACGAAGAGGAGCAGGCGAA
GGCTCTTGGCGAGGTTACCGCTGCGATGGCGGCGACAAGGATCGCGCCGG
CGCCAGCAGCCTCGGCCGCCGCGCCTGTCCCTCCTGCGGCTGCTGTGGCT
GCTACGGCTGCTGCCGCCGCCAGCAGCAAAAGGGAGCAGCTGATGAACAT
GATTGGGGCAGGGAAACCGTCGACGAAAGCATCCAGTGCACCTGCGGGGG
CGGTGGATCAAACGGGCGGAGCCCCTCAACCCCAGGGGACGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCGAGTGAATAAAAGACATCCCGCGGG
CGCTTCCGCAGGGCCGCAACCGCAGCCGCAGCAACAGGCTTTGCCGCCAG
CAATGACGGTAGCCACGGCATCTGCGGCTGGAAGAGGAGGACCGATGCCT
GACGGTAGTGCTGCCCCTCCCGCTCCCCTCGACGGCCTTCTCCCCCCTCC
TCCCCCGCCCACAGGAGGCGGGGCGGAAGGCGACGCGATGCGGGCTCTGT
GGCACCAGCAGCGTATGCTGGAGGCGGTGGGGCAGCAGCAGCGGCACCAG
CAAATCCTCCAATTCCAGCAGCAGCAGTACCATCTCCAGCAGCAGCATCA
TCAACATCATCAGCACCTCTTACAGCAGCAGCATCAGCACGTGTTTCAGC
AGCAGCAGCGGCTTCACCAACAAATACAACTTCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGTTTGGGCAACAAGGAGTAGGTACGACGGCGGCATTTCT
GCCCGTCGGCTACTCTCACGGAGGGATCATGCCGCAGCAGCAGCACCAGC
TCGGCCAACAGGGCAGCAGCTCTTCGCCGGGCGCTGCTGCGGCGGGCGCC
GGGGTGGTTCTTGCTGGTGCCGCAACTGCGCCCGCTGCTGTTGCTCCGGC
TGTTGGTAGTGTGGTAGCAGGAGCGGCCGGTGCAGGAAGAAAAGCTGCTG
AGGCGAAAGCGGGGCCGCTGCAGGGCCGGCAGGAGCGAGCGCACGAAGAG
GAGCAGGCGAAGGCTCTTGGCGAGGTTACCGCTGCGATGGCGGCGACAAG
GATCGCGCCGGCGCCAGCAGCCTCGGCCGCCGCGCCTGTCCCTCCTGCGG
CTGCTGTGGCTGCTACGGCTGCTGCCGCCGCCAGCAGCAAAAGGGAGCAG
CTGATGAACATGATTGGGGCAGGGAAACCGTCGACGAAAGCATCCAGTGC
ACCTGCGGGGGCGGTGGATCAAACGGGCGGAGCCCCTCAACCCCAGGGGA
CGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGAGTGAATAAAAGA
CATCCCGCGGGCGCTTCCGCAGGGCCGCAACCGCAGCCGCAGCAACAGGC
TTTGCCGCCAGCAATGACGGTAGCCACGGCATCTGCGGCTGGAAGAGGAG
GACCGATGCCTGACGGTAGTGCTGCCCCTCCCGCTCCCCTCGACGGCCTT
CTCCCCCCTCCTCCCCCGCCCACAGGAGGCGGGGCGGAAGGCGACGCGAT
GCGGGCTCTGTGGCACCAGCAGCGTATGCTGGAGGCGGTGGGGCAGCAGC
AGCGGCACCAGCAAATCCTCCAATTCCAGCAGCAGCAGTACCATCTCCAG
CAGCAGCATCATCAACATCATCAGCACCTCTTACAGCAGCAGCATCAGCA
CGTGTTTCAGCAGCAGCAGCGGCTTCACCAACAAATACAACTTCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGTTTGGGCAACAAGGAGTAGGTACGACG
GCGGCATTTCTGCCCGTCGGCTACTCTCACGGAGGGATCATGCCGCAGCA
GCAGCACCAGCTCGGCCAACAGGGCTTGCTAAGCTACCCGCGCCCGCTGC
AGCGGCAACAGGGCTTGCTAAGCTACCCGCGCCCGCTGCAGCGGCAACAG
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