mRNA_H-canaliculatus_F_contig1225.1931.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1225.1931.1
Unique NamemRNA_H-canaliculatus_F_contig1225.1931.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1225.1931.1 vs. uniprot
Match: A0A6H5KUS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUS8_9PHAE)

HSP 1 Score: 327 bits (838), Expect = 5.120e-110
Identity = 165/208 (79.33%), Postives = 186/208 (89.42%), Query Frame = 3 
Query:  339 MHSGATYDYSVKLLVIGDSGVGKSCLLLRYSDDQFSGSYISTIGIDFKIKSTVLLGKRAKLQIWDTAGQERFRNITSAYYRGSMGILLVYDVADIKSFRNVSNWMRQIELNASPDVNITLVGNKCDVGEDERAVSFEQGQRLAADHGEKVRFFETSARSNVNVTEAFEGLATDVIQSRLQSQDQAAVIGGPALQLGSEEPKSKLADCC 962
            MHS   YD+ VKLL+IGDSGVGKSCLLLRYSDDQFSGSYISTIGIDFKIK+  L+GK+AKLQIWDTAGQERFRNITSAYYRGSMGI+LVYDV D+KSF+NV NWMRQIELNA+PDVN+TLVGNK DV E+ER VS EQGQRLAA+HG+ VRFFETSARSNVNVTEAFEGLATDVI +RLQ+QD+A++     L+LG EEP +K +DCC
Sbjct:    2 MHSTTGYDHLVKLLIIGDSGVGKSCLLLRYSDDQFSGSYISTIGIDFKIKTVFLMGKKAKLQIWDTAGQERFRNITSAYYRGSMGIMLVYDVTDLKSFKNVGNWMRQIELNAAPDVNVTLVGNKSDVAEEERVVSLEQGQRLAAEHGDHVRFFETSARSNVNVTEAFEGLATDVI-TRLQAQDEASLARVAPLKLGQEEP-TKKSDCC 207
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BLAST of mRNA_H-canaliculatus_F_contig1225.1931.1 vs. uniprot
Match: A0A485LS68_9STRA (Aste57867_25075 protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A485LS68_9STRA)

HSP 1 Score: 239 bits (610), Expect = 1.980e-75
Identity = 127/210 (60.48%), Postives = 159/210 (75.71%), Query Frame = 3 
Query:  339 MHSGATYDYSVKLLVIGDSGVGKSCLLLRYSDDQFSGSYISTIGIDFKIKSTVLLGKRAKLQIWDTAGQERFRNITSAYYRGSMGILLVYDVADIKSFRNVSNWMRQIELNASPDVNITLVGNKCDVGEDERAVSFEQGQRLAADHGEKVRFFETSARSNVNVTEAFEGLATDVIQSRLQS--QDQAAVIGGPALQLGSEEPKSKLADCC 962
            +HS + YD  VKLL+IGDSGVGKSCLL+RYSDD F+ S+I+TIGIDFK+K+  + GKR KLQIWDTAGQERFR IT+AYYRG+MGILLVYDV D  SF+NV NWMRQI+ +ASP+VN  L+GNKCDV   ERAV+ EQG+ LA ++G  V+FFETSA+SN+NV EAF  +A DV Q RL     D++ V     ++L  +  ++    CC
Sbjct:    3 VHS-SKYDLLVKLLLIGDSGVGKSCLLMRYSDDSFTTSFITTIGIDFKVKTIEVDGKRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDDHSFQNVRNWMRQIQQHASPNVNKILIGNKCDVDPSERAVTKEQGEALANEYG--VQFFETSAKSNLNVEEAFRSIAVDV-QKRLAECESDRSDVANQTRIKLDEQNSRAASEGCC 208
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BLAST of mRNA_H-canaliculatus_F_contig1225.1931.1 vs. uniprot
Match: D7FME1_ECTSI (Rab8B, RAB family GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME1_ECTSI)

HSP 1 Score: 236 bits (603), Expect = 3.500e-75
Identity = 121/154 (78.57%), Postives = 136/154 (88.31%), Query Frame = 3 
Query:  501 LGKRAKLQIWDTAGQERFRNITSAYYRGSMGILLVYDVADIKSFRNVSNWMRQIELNASPDVNITLVGNKCDVGEDERAVSFEQGQRLAADHGEKVRFFETSARSNVNVTEAFEGLATDVIQSRLQSQDQAAVIGGPALQLGSEEPKSKLADCC 962
            +GK+AKLQIWDTAGQERFRNITSAYYRGSMGI+LVYDV D+KSFRNV NWMRQIELNA+PDVN+TLVGNK DV E ER VSFEQGQRLAA+HG+ VRFFETSARSNVNVTEAFEGLATDVI +RLQ+QD+A++     L+LG EE   K +DCC
Sbjct:    1 MGKKAKLQIWDTAGQERFRNITSAYYRGSMGIMLVYDVTDVKSFRNVGNWMRQIELNAAPDVNVTLVGNKSDVAEAERVVSFEQGQRLAAEHGDHVRFFETSARSNVNVTEAFEGLATDVI-TRLQTQDEASLARVAPLKLGQEESTEK-SDCC 152
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BLAST of mRNA_H-canaliculatus_F_contig1225.1931.1 vs. uniprot
Match: A0A067CHF2_SAPPC (Uncharacterized protein n=5 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CHF2_SAPPC)

HSP 1 Score: 234 bits (597), Expect = 1.710e-73
Identity = 121/179 (67.60%), Postives = 147/179 (82.12%), Query Frame = 3 
Query:  339 MHSGATYDYSVKLLVIGDSGVGKSCLLLRYSDDQFSGSYISTIGIDFKIKSTVLLGKRAKLQIWDTAGQERFRNITSAYYRGSMGILLVYDVADIKSFRNVSNWMRQIELNASPDVNITLVGNKCDVGEDERAVSFEQGQRLAADHGEKVRFFETSARSNVNVTEAFEGLATDVIQSRL 875
            +HS + YD  VKLL+IGDSGVGKSCLL+RYSDD F+ S+I+TIGIDFK+K+  + GKR KLQIWDTAGQERFR IT+AYYRG+MGILLVYDV D  SF+NV NWMRQI+ +ASP+VN  L+GNKCDV   ER V+ +QG+ LAA++G  V+FFETSA+SN+NV EAF  +A DV Q RL
Sbjct:    2 VHS-SKYDLLVKLLLIGDSGVGKSCLLMRYSDDTFTSSFITTIGIDFKVKTIDVDGKRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDDHSFQNVRNWMRQIQQHASPNVNKILIGNKCDVDPSERVVTTQQGEELAAEYG--VQFFETSAKSNLNVEEAFRSIAVDV-QKRL 176
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BLAST of mRNA_H-canaliculatus_F_contig1225.1931.1 vs. uniprot
Match: Q019D2_OSTTA (Small GTPase superfamily, Rab type n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=Q019D2_OSTTA)

HSP 1 Score: 232 bits (592), Expect = 1.230e-72
Identity = 127/207 (61.35%), Postives = 159/207 (76.81%), Query Frame = 3 
Query:  345 SGATYDYSVKLLVIGDSGVGKSCLLLRYSDDQFSGSYISTIGIDFKIKSTVLLGKRAKLQIWDTAGQERFRNITSAYYRGSMGILLVYDVADIKSFRNVSNWMRQIELNASPDVNITLVGNKCDVGEDERAVSFEQGQRLAADHGEKVRFFETSARSNVNVTEAFEGLATDVIQSRLQSQDQAAVIGGP-ALQLGSEEPKSKLADCC 962
            +GA YD+ +KLL+IGDSGVGKSCLLLR+SDDQF+ S+I+TIGIDFKIK+  L GKR KLQIWDTAGQERFR IT+AYYRG+MGILLVYDV+D +SF NV  WMR IE +AS +VN  L+GNKCDV ED+R +S  +GQ LA + G  + FFETSA+S+VNV +AF  +A D I++RL     +  +G P A+ LG +   +K A CC
Sbjct:   14 NGAHYDHLLKLLLIGDSGVGKSCLLLRFSDDQFTTSFITTIGIDFKIKTVELGGKRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVSDERSFENVRGWMRNIEQHASSNVNKILIGNKCDVKEDKRVISKARGQALADEFG--IPFFETSAKSSVNVNDAFMTIAGD-IKNRLTG---SKGLGAPNAINLG-DRAATKRASCC 213
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BLAST of mRNA_H-canaliculatus_F_contig1225.1931.1 vs. uniprot
Match: A0A812YAB8_SYMMI (RAB1BV protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812YAB8_SYMMI)

HSP 1 Score: 229 bits (583), Expect = 2.540e-71
Identity = 118/204 (57.84%), Postives = 149/204 (73.04%), Query Frame = 3 
Query:  351 ATYDYSVKLLVIGDSGVGKSCLLLRYSDDQFSGSYISTIGIDFKIKSTVLLGKRAKLQIWDTAGQERFRNITSAYYRGSMGILLVYDVADIKSFRNVSNWMRQIELNASPDVNITLVGNKCDVGEDERAVSFEQGQRLAADHGEKVRFFETSARSNVNVTEAFEGLATDVIQSRLQSQDQAAVIGGPALQLGSEEPKSKLADCC 962
            A YDY +KLL+IGDSGVGKSCLLLRYSDD F+ S+I+TIGIDFKIKS  +   + KLQIWDTAGQERFR IT+AYYRG+MGILLVYD++D  SF NV NWMRQIE NA+ +VN  L+GNK D+   ER V+  QG+ LA + G  ++FFETSA+ N NV EAF  +A+D+++   ++ +     GG +LQ G    K +   CC
Sbjct:   12 AKYDYLIKLLLIGDSGVGKSCLLLRYSDDSFTSSFITTIGIDFKIKSITIGDSKVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDISDESSFANVRNWMRQIEQNAAENVNRVLIGNKSDIDPAERKVTHAQGKALADEFG--IKFFETSAKLNSNVDEAFLAIASDIVERLRENPEHYGTDGGVSLQNGK---KPQGGGCC 210
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BLAST of mRNA_H-canaliculatus_F_contig1225.1931.1 vs. uniprot
Match: H3G925_PHYRM (Uncharacterized protein n=19 Tax=Oomycota TaxID=4762 RepID=H3G925_PHYRM)

HSP 1 Score: 228 bits (582), Expect = 3.260e-71
Identity = 120/209 (57.42%), Postives = 156/209 (74.64%), Query Frame = 3 
Query:  339 MHSGATYDYSVKLLVIGDSGVGKSCLLLRYSDDQFSGSYISTIGIDFKIKSTVLLGKRAKLQIWDTAGQERFRNITSAYYRGSMGILLVYDVADIKSFRNVSNWMRQIELNASPDVNITLVGNKCDVGEDERAVSFEQGQRLAADHGEKVRFFETSARSNVNVTEAFEGLATDVIQSRLQSQ-DQAAVIGGPALQLGSEEPKSKLADCC 962
            +HS + YD  +KLL+IGDSGVGKSC+LLRYSDD F+ S+I+TIGIDFK+K+  + GKR KLQIWDTAGQERFR IT+AYYRG+MGILLVYDV D  SF+N+ NWM QI  NAS +VN  L+GNKCDV   ERAV+ +QGQ LA + G  ++FFETSA+SN N+ EAF  +A D+ +   +S+ D+  V  G   ++   + ++K + CC
Sbjct:    2 VHS-SKYDLLIKLLLIGDSGVGKSCVLLRYSDDSFTTSFITTIGIDFKVKTIDVDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDDHSFQNIRNWMTQIRQNASSNVNKILIGNKCDVDPSERAVTTKQGQDLADEFG--IKFFETSAKSNKNIDEAFRSIAVDIQKRLAESEHDRLDVANGSKFRVDESQEQAKDS-CC 206
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BLAST of mRNA_H-canaliculatus_F_contig1225.1931.1 vs. uniprot
Match: I1HT75_BRADI (Uncharacterized protein n=16 Tax=Poaceae TaxID=4479 RepID=I1HT75_BRADI)

HSP 1 Score: 228 bits (582), Expect = 4.380e-71
Identity = 120/208 (57.69%), Postives = 154/208 (74.04%), Query Frame = 3 
Query:  351 ATYDYSVKLLVIGDSGVGKSCLLLRYSDDQFSGSYISTIGIDFKIKSTVLLGKRAKLQIWDTAGQERFRNITSAYYRGSMGILLVYDVADIKSFRNVSNWMRQIELNASPDVNITLVGNKCDVGEDERAVSFEQGQRLAADHGEKVRFFETSARSNVNVTEAFEGLATDVIQSRLQS----QDQAAVIGGPALQLGSEEPKSKLADCC 962
            A YDY +KLL+IGDSGVGKSCLLLR+SD  F+ S+I+TIGIDFKI++  L GKR KLQIWDTAGQERFR IT+AYYRG+MGILLVYDV D  SF N+ NW+R IE +AS +VN  L+GNK D+ E +RAVS  QGQ LA ++G  ++FFETSA++N+NV + F  +A D+ Q   ++    +DQ   I       GSE+P+S+ + CC
Sbjct:   11 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLIGNKADMDESKRAVSTAQGQALADEYG--IKFFETSAKTNLNVEQVFFSIARDIKQRLAETDSKPEDQTIKINKTGQ--GSEDPESQKSACC 214
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BLAST of mRNA_H-canaliculatus_F_contig1225.1931.1 vs. uniprot
Match: A0A383VMM6_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VMM6_TETOB)

HSP 1 Score: 228 bits (581), Expect = 6.840e-71
Identity = 123/207 (59.42%), Postives = 150/207 (72.46%), Query Frame = 3 
Query:  357 YDYSVKLLVIGDSGVGKSCLLLRYSDDQFSGSYISTIGIDFKIKSTVLLGKRAKLQIWDTAGQERFRNITSAYYRGSMGILLVYDVADIKSFRNVSNWMRQIELNASPDVNITLVGNKCDVGEDERAVSFEQGQRLAADHGEKVRFFETSARSNVNVTEAFEGLATDVIQSRLQSQDQAAVIGGPA--LQLGSEEPKSKLA---DCC 962
            YDY +KLL+IGDSGVGKSCLLLR+S+D F+ S+I+TIGIDFKIK   L  K  KLQIWDTAGQERFR ITSAYYRG+MGILLVYDV D  SF N+ NWMR IE +AS +VN  LVGNK D+ +++RAV   +GQ LAA++   +RFFETSA+ N+NV E F  +A DV+Q   Q Q +   +GG +  L+L S   KSK      CC
Sbjct:   12 YDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIKKIFLDNKWVKLQIWDTAGQERFRTITSAYYRGAMGILLVYDVTDEASFNNIRNWMRNIEQHASDNVNKVLVGNKSDMADEKRAVPVARGQALAAEYN--MRFFETSAKDNLNVEEVFTSIAKDVMQRLQQEQAEQQTVGGTSSPLKLTSNLDKSKQRRKKGCC 216
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BLAST of mRNA_H-canaliculatus_F_contig1225.1931.1 vs. uniprot
Match: A9SKQ8_PHYPA (Rab8/RabE-family small GTPase n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A9SKQ8_PHYPA)

HSP 1 Score: 226 bits (576), Expect = 3.530e-70
Identity = 121/210 (57.62%), Postives = 155/210 (73.81%), Query Frame = 3 
Query:  345 SGATYDYSVKLLVIGDSGVGKSCLLLRYSDDQFSGSYISTIGIDFKIKSTVLLGKRAKLQIWDTAGQERFRNITSAYYRGSMGILLVYDVADIKSFRNVSNWMRQIELNASPDVNITLVGNKCDVGEDERAVSFEQGQRLAADHGEKVRFFETSARSNVNVTEAFEGLATDVIQ--SRLQSQDQAAVIGGPALQL--GSEEPKSKLADCC 962
            S A YDY +KLL+IGDSGVGKSCLLLR+SDD F+ S+I+TIGIDFKI++  L GKR KLQIWDTAGQERFR IT+AYYRG+MGILLVYDV D  SF N+ NW+R IE +AS +VN  LVGNK D+ E +RAV   +GQ LA ++G  ++FFETSA++N+NV + F  +A D+ Q  +   S+ +AA    P ++L  G+ + K   A CC
Sbjct:    8 SRADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYG--IKFFETSAKTNMNVEDVFFTIARDIKQRLAESDSKPEAAKDAKPDVKLLAGNAQTKPASASCC 215
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1225.1931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUS8_9PHAE5.120e-11079.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A485LS68_9STRA1.980e-7560.48Aste57867_25075 protein n=4 Tax=Aphanomyces TaxID=... [more]
D7FME1_ECTSI3.500e-7578.57Rab8B, RAB family GTPase n=1 Tax=Ectocarpus silicu... [more]
A0A067CHF2_SAPPC1.710e-7367.60Uncharacterized protein n=5 Tax=Saprolegniaceae Ta... [more]
Q019D2_OSTTA1.230e-7261.35Small GTPase superfamily, Rab type n=2 Tax=Ostreoc... [more]
A0A812YAB8_SYMMI2.540e-7157.84RAB1BV protein n=1 Tax=Symbiodinium microadriaticu... [more]
H3G925_PHYRM3.260e-7157.42Uncharacterized protein n=19 Tax=Oomycota TaxID=47... [more]
I1HT75_BRADI4.380e-7157.69Uncharacterized protein n=16 Tax=Poaceae TaxID=447... [more]
A0A383VMM6_TETOB6.840e-7159.42Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A9SKQ8_PHYPA3.530e-7057.62Rab8/RabE-family small GTPase n=3 Tax=Physcomitriu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1225contigH-canaliculatus_F_contig1225:7643..13705 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score241.1
Seed ortholog evalue4.6e-61
Seed eggNOG ortholog2880.D7FME1
KEGG koko:K07901
KEGG Pathwayko04144,ko04152,ko04530,ko04972,map04144,map04152,map04530,map04972
EggNOG free text desc.GTPase activity
EggNOG OGsKOG0078@1,KOG0078@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04031,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRab8B, RAB family GTPase
Ec32 orthologEc-05_001110.1
Exons6
Model size965
Cds size627
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928940.9817817-UTR-H-canaliculatus_F_contig1225:7642..79801622928940.9817817-UTR-H-canaliculatus_F_contig1225:7642..7980Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1225 7643..7980 +
1696845620.9811602-UTR-H-canaliculatus_F_contig1225:7642..79801696845620.9811602-UTR-H-canaliculatus_F_contig1225:7642..7980Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1225 7643..7980 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928940.9977915-CDS-H-canaliculatus_F_contig1225:7980..80381622928940.9977915-CDS-H-canaliculatus_F_contig1225:7980..8038Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1225 7981..8038 +
1696845620.9948025-CDS-H-canaliculatus_F_contig1225:7980..80381696845620.9948025-CDS-H-canaliculatus_F_contig1225:7980..8038Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1225 7981..8038 +
1622928941.0075932-CDS-H-canaliculatus_F_contig1225:10664..107371622928941.0075932-CDS-H-canaliculatus_F_contig1225:10664..10737Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1225 10665..10737 +
1696845621.0066032-CDS-H-canaliculatus_F_contig1225:10664..107371696845621.0066032-CDS-H-canaliculatus_F_contig1225:10664..10737Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1225 10665..10737 +
1622928941.0176396-CDS-H-canaliculatus_F_contig1225:11593..116941622928941.0176396-CDS-H-canaliculatus_F_contig1225:11593..11694Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1225 11594..11694 +
1696845621.0187922-CDS-H-canaliculatus_F_contig1225:11593..116941696845621.0187922-CDS-H-canaliculatus_F_contig1225:11593..11694Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1225 11594..11694 +
1622928941.032723-CDS-H-canaliculatus_F_contig1225:12197..123611622928941.032723-CDS-H-canaliculatus_F_contig1225:12197..12361Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1225 12198..12361 +
1696845621.0286462-CDS-H-canaliculatus_F_contig1225:12197..123611696845621.0286462-CDS-H-canaliculatus_F_contig1225:12197..12361Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1225 12198..12361 +
1622928941.048754-CDS-H-canaliculatus_F_contig1225:12980..131141622928941.048754-CDS-H-canaliculatus_F_contig1225:12980..13114Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1225 12981..13114 +
1696845621.0413644-CDS-H-canaliculatus_F_contig1225:12980..131141696845621.0413644-CDS-H-canaliculatus_F_contig1225:12980..13114Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1225 12981..13114 +
1622928941.0636241-CDS-H-canaliculatus_F_contig1225:13608..137051622928941.0636241-CDS-H-canaliculatus_F_contig1225:13608..13705Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1225 13609..13705 +
1696845621.0552738-CDS-H-canaliculatus_F_contig1225:13608..137051696845621.0552738-CDS-H-canaliculatus_F_contig1225:13608..13705Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1225 13609..13705 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1225.1931.1prot_H-canaliculatus_F_contig1225.1931.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1225 7981..13705 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1225.1931.1

>prot_H-canaliculatus_F_contig1225.1931.1 ID=prot_H-canaliculatus_F_contig1225.1931.1|Name=mRNA_H-canaliculatus_F_contig1225.1931.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=209bp
MHSGATYDYSVKLLVIGDSGVGKSCLLLRYSDDQFSGSYISTIGIDFKIK
STVLLGKRAKLQIWDTAGQERFRNITSAYYRGSMGILLVYDVADIKSFRN
VSNWMRQIELNASPDVNITLVGNKCDVGEDERAVSFEQGQRLAADHGEKV
RFFETSARSNVNVTEAFEGLATDVIQSRLQSQDQAAVIGGPALQLGSEEP
KSKLADCC*
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mRNA from alignment at H-canaliculatus_F_contig1225:7643..13705+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1225.1931.1 ID=mRNA_H-canaliculatus_F_contig1225.1931.1|Name=mRNA_H-canaliculatus_F_contig1225.1931.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=6063bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1225:7643..13705+ (Hapterophycus canaliculatus Oshoro5f female)
GTCCTTCCGTACCATACGCAGGTATATCTGCAAACGCGGCGTGCCGTGGA
AAGGCGGACTTTGCTCTGTTGCCCTCGGGCTGCTGTGATCGTTCCCCGAG
AGCACGAGAAGGTCAAGCAAGTGAGAGCCGTGCGCGTTCGCGGGGAAACA
AACCAAAAGGCGGAGTGTGACAGAACACAGCAGCACATCGGAAACACCAG
TTTTGTAGGGAAGACGGGGTGGGTGCGTTGCGTCGCTGACTACGCGGGAG
GGGCATCCAAGAGAGGAGAGTCGGAGCGGCAGGAGGAACAGAGGGTCCCT
GCCGCTGCTACTGCCGTTGCCACTGTCGGAGGAGGAGCATGCATTCAGGC
GCGACGTATGACTATTCTGTCAAGCTGCTGGTTATCGGAGACAGCGGTAA
GAACAAACACACGATTGCACATGGAAAGCGGGGGAAGCGAGGGCCGGAAG
GGCTTACAGCAGCTCCTCGTTTGCGGTGTATCCTGACAGTCTGTCCGCCA
GCTTCCTGTTGAGGCATTATTTGAATCTCGTTATTATGGCGCACACCCGT
TGTTTCATGGAATGTTCTTTCTCTCCTTTTCACGTACCCCACCACAGACA
ATTTCAGCAGAGCATCTCAACAGCTCGGCGTCGATGAGCACGAAGCCATG
ACGAGGCTGTATCGTTTCCGTAGAGTGTAGAGTGTATCCGACGTGTCGCC
TCTTGCGTGTGATACGAATGTGAAACCGTATCATTTGATATGAACTTTTT
GAGAAAGGTCAACATCACGGAAAATCCCCTATCGTTTTTCACATGTTGGC
ACGATTTCATTAATCCTTTCCCTAATCCCGTTTTCCGTTTCAACTGCTGG
ACAAAGTTGTGGATATCCTTGAAATTTGCGAAGAGCGAAGAATGCCCCCC
CCTCCCCCTCTTCCTGTGGGTGCAAGCCGACTTTCCGCTTGGGGGTCGGC
AGACTACCGCATTGTTCAAGAAGTAGGTCCATCGGCCCAGTTTATTGATC
ACCTTTTGGTCTCTTGAAAAAAATAACGGGTTCATTTGAGCTGAGATAGC
AAGAGGTTTGGGTCTACGTATTACTCTTGATTCCCAAGCATCTTCCGCTG
TTGTACGACCCATTTCGAAGTCGAAGTGATATTCCCCAATCCTTGAAAGA
AAACATAAGAACACCTCGAGTTTACATTACCCATCATGCGCGGATTCCGT
CATCCTGTTCCCCAGCCTCGCCTCTGGCAATGACGGCATTCTCTTGAGCG
CTAAAGTTTCGTCGCTCACTCCTGTCTTAGTGCGGGGAGGGCCGCACCCT
CATTTGCTGCGCGTCGTTTGTCCATGTGACCGTTAGTAAAGAATCTCCCC
TCTGAAGAGATAAGATGAAAGATACAGAGAAGTAGACTTTTTACGTGGAT
ACACATCCACGCTGCTTCTTCTCTTGCACAGAAACGTTCCTCCCGTCGAT
GGATGTGCCACCGGACCACCGGCACCAAAATCGTAGGCAGTGCCGCTTTT
CGCGCTTTCGCCTTCCTCTCCCGTACGCACCACCTTTGAACCCCACCAAA
CAAGTTCTTCGTATCACACAAGTGCCATATATATGCTGTTTTGTACAGTG
GTAGTATTACCGTACCTTCCTCCACTGGTGTAGACTAATGGGAAAAAGCA
TGTGGCGTAACGTTTGAAGCGATCGTTGTGAAGACACCGTCGGTATCGCG
CACACCCAACCGTGACACCTTTATTGAGCTTTGGATCTTTGTTTCTCCAA
ATTGATATCGTATGACATCCGTGAGCCGTTTCAATTGACGCACCACGTCC
GCCATTGTTCGATCTACGCACATTACATTTATCCTTCGACGTTCATGACT
TGAGTACTCTCTGCCCAAGCTCCGCAACGATGGACGGGGAATCGGGATAG
AGGCGTATTCGCGATCACAAGATCATGATCACAACAGTTCTGGTCATGCT
CTCGAAGACTGTGGAGTACACGTTTTTTTTCGTTTTTATCTCGCCCTCAT
AAATGCCATCTCGCCTCCCGCGCCCACCGACCGTGTTGTACCCGATGCTG
GTGAAGTCCTCTGGCATTTGCACGAGTGGGCGTATTTCTGCTGCAAACGA
GCGTTTTGTTACCGACTTCTCACGGGGTACAGCAGTAGCTCAGCTCGATC
AGAGCGTCCCTGATTCGTTTCTCACTTATCTCGCTTGAGGTTTGCTTCCG
CTTGATCGTCTCTCAAAATGGAGCCCTTGCTCGAATCCTTTCATTTTGTT
CGATGTTGACCGTCGGCGTCACGTCGTTATTTATTAGTGTGCCTCTGATA
CGCCTGGCCCCTCAAACCCTAGCCTGCACCACGAAAGTGTACGTCGTCTG
CAAGTATGGAAACGAAACGCGTGTTTTGCTTCGTTTCGTGTCTCATCTCT
TGTCTCGTACAATGTACTTGTCGACGTGACATGACATGATGACATCCTTT
CGGTCCTGTCTTTCACATCCGAGACATGAACGGTTCCTTACACCCTCGCA
TGCGACCGATGCCGTACGTCTTTCTCCTTCCGGCCCCATCTGGGCTACTA
CTCATGGCGTCGCATGACGAGCAATATCTTTATTCACACGACAGACGACG
AAATACAGACTCGTTCCCGGAGTCACCGGTCACGCTCTCTGGGTCCCAAC
ACGGCTCGTACACTCGTCGTGCCGATCAACTTTCTGGCGATGGAAGCTGT
TCATGAGTTGGACTCGGAAGTGGGTCCTCTGAGCGCAGTTGTACTTGTAC
CTGCGGATTCGTTTTGTGCGAGTGATGGCGATGGTCGCGTCTCTGCCCTC
ACACCACCGCGTCAAACGTGCCCCCGTGCTTTCTCATCAAACACTACAGC
GAGCGTATGGTGAAGGCATGGTCTGTTGCTGTGCGCTTGCGTTGCCGGAG
ACGCCGACGATCCGTTTCCCTCGGACCCTCAGCGTATGTCACCCAGCCTC
CTCGATGTTCATCGTTCGCATTTCTTTCCTTATATGTTCATGTTCATGAA
TCCCGATCCGATCCAATGGCAGGTGTCGGCAAGAGCTGCCTGCTTCTTCG
ATACAGCGACGATCAGTTTTCGGGGTCCTATATTTCCACCATCGGGTACG
TACGTCGGCGTCAACACGTTTCTATGCGCACGGTCAATCCGCGCCACATC
TATTGGTAGAGTTTCCGTCCTGTGAAGTATTATGTGACCAAATGTTTCGG
TCGGTTTGTGGGATGAATGGTTCATGATCGTGTAGTGTCCCATGCATCTG
TCTTTCGTTCTTCAGCTTTCACTCCTAAGGTCTTGTAAGTGTCGCGCGTC
GTGTGTTTCCGTTTTCTACATGTCGAGGATTATCTGACGAAGGAAGCCAC
AGTGTTTTTTTTCGTCGTTTGATTTCTCGTGGAGTCTTGCGTGTCCAGCG
GCAGCATTTTCCTACAAAACCATCATGTGGCAAAGAGAGACGGCGTGAAG
CTTTCACACACAAGCTCGTGCCTGTGCGCATCCATGCGCCGATCCCCGGA
CAAATTCAGCTCGTCCTCAAATGCGCTGGGGAGTTCCAACGGGGTTGTGA
CGCACGTCGTCAGGTCACGAACACACCCGAGTGTAACATTTGGCTTTCAC
GCCGCATGCTGCTGGCTCGCTGGGAACGTTGTCGTTTTTGTGTTTGGTTG
TCTAGGTTGTCTTAAATTATGTTGTGGCCACAGCCGGAGATCACGCCGTC
CGTGTGCGGATTCCGCGACCTGTGATTCCCACCTCCCCTACTTTCGCTTT
CTGTGGTTTCGATCGTGCCAGGTATTTCGATTTAGTAACGACTGGTGTAG
ATGACTGTAGATGACTGTAGATGAATCGAAATGTCCGCACGCGAAAAAAC
ACAGAGCCATTTGAGCACCGTCTGCGGAGTTACGAAAAGACCCTTCATCA
TATTTTCTCGATCTTTCGCCTTCATCCACCCATCGCATTCTACGTTTGCA
GAATCGATTTCAAGATCAAATCCACGGTTTTGTTGGGGAAGAGGGCAAAA
CTGCAGATTTGGGACACAGCAGGGCAAGAGAGATTCCGAAACATCACTTC
CGGTGAGAGGGGGGCCCTGACTGATTCATCCACGGAAAAGGCCAGCAGTA
GAAATAGTGTAGAGAGCATGTCGTATAAGGAAACCATGTTCGGCCTCGCT
TGTCCGGCCTATGTGACAACGGCTGATACGCTGGGGGTGTCGTACCGATT
CGACGGTGTGGCAGCTCACGCACGCGCTACGTCGGCTGTCTCTGTCGTTG
CTATCCATGCTATTGTTGATGACGATGGTGTGATTGTTGCTGATGCCCCT
GTGAGTGGTTCGTTTTGGATGTGCCCCTGAGGAAGGCGACCATCTGTCTA
GTTCAGAAAGTGACGTAAAAGGATTGTGTCCAATGGTAGTGACGACGTCC
GAAGCAGAAAAAACATTGGAAATACCAGAAGGCAAAACGCCCCGAAGGAA
GTGAGCACGACGAGAATGAAAACTAGGAAGAGAACAATCTCGACCGTAAC
TTTTGTAAATTTGTATGCAACGGTGACCCCCCCCCCTCCTCCGACGTTTA
TGCAGCTTACTACAGGGGGAGCATGGGGATCTTGTTAGTGTACGACGTGG
CGGATATCAAATCGTTCAGGAACGTCAGTAACTGGATGCGGCAGATCGAA
CTCAACGCGTCTCCCGACGTGAACATTACGCTGGTTGGCAACAAATGCGA
CGTCGGGGAGGACGAAAGGGTGAGAGGGAGAGAAAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAATAGAACATGCAGAAAACATGCAGAAGAGATAAACGAGTGGCGTGAG
GACCGTTCGAGATGGATGGGCGGGGGCAGGATGTGTATGGTGTTTGCTTG
TTGCGTGTGCTCGTTTTAAATTCATGCACATCCTACGCCAACCAACCGGC
TGCGCCCGGGTTTTATATGATTGTGGCACGGGCGCGCTAAAATGATATCT
CCTGTTAACCCACAATTGGATGTCATTTCACAAGCGAACGGTCGGGACTG
ATTACACCCAGGTTGTCGACGTGTCTCACACTGGAGAGGATCTTGTGCAG
GGATTGGGCCAAGCCTGCGGGCGTTTACTCACCAAGCAGAGCGGTCCTCA
AGATCCCCCACGCCCCCCGACTCCTTCCACCTGCGAACTATTCTACGTGT
CTGGCCATTTCTGACGCCCGGGCACGTGCACCATCTACAAGTTGTGTGAT
TTTTTGTGTCCACGCCTCGAACATTACACCCTTCTGTAAATTTAGTGTTT
CCGCCGCATTTCTTCCCCCCCATACACTTGTCGTGAAGGCGGTTTCTTTC
GAGCAGGGGCAGAGGTTGGCCGCCGACCACGGCGAGAAAGTCCGGTTCTT
CGAGACCAGCGCTCGGTCTAACGTGAACGTCACCGAAGCGTTCGAGGGCT
TAGCTACGGACGTCATACAGAGGTGAGAACGACCCGCGCTTTTGTCACTC
CTGCGACTCTGGGTCGAGACTTCATCCCTTGTCCAACCCCTCCATTCGTT
GCTTGAGGCGTGCCGCGTGTTGCATTTTCCGTCCTGTGTAAGCGACTCGT
ATTTTACGGGCCGGTGGAAGCGGTCGAGTGACGCCTTCTGTTTCAGTCAG
GCTGCAGGCATACCACCAATCGAGCATGCTTACAGACAAAACAAGACGTG
CCTACGATCGTGGTTATGTTGTTTTCTCTCCATTTCGACCCGGTTCTCAA
CTTGGTCGCTCTGGTACTTGTTTTTCGGTGGCAATTCAATCAGAAACAGA
CCTAATAGTTACCAAGTTGAGCACCTTCATCTGCGTACATAAAATCGCTA
AAACTCGTTTGTTTCTCGACGGCCTGAACTGCTTTTTCTCCCTCATATTT
CGAAGCGTGCTTGATTGCATTCATTTTGTTGGGCTGTATTCGGCTGTCTT
TCCACTCGTGTCCAAGCAGGCTGCAATCGCAAGATCAGGCGGCCGTCATC
GGGGGACCGGCTTTGCAACTTGGCAGCGAAGAGCCCAAGAGCAAGCTCGC
TGACTGCTGCTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1225:7643..13705+

>mRNA_H-canaliculatus_F_contig1225.1931.1 ID=mRNA_H-canaliculatus_F_contig1225.1931.1|Name=mRNA_H-canaliculatus_F_contig1225.1931.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1254bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1225:7643..13705+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCATTCAGGCGCGACGTATGACTATTCTGTCAAGCTGCTGGTTATCGG
AGACAGCGATGCATTCAGGCGCGACGTATGACTATTCTGTCAAGCTGCTG
GTTATCGGAGACAGCGGTGTCGGCAAGAGCTGCCTGCTTCTTCGATACAG
CGACGATCAGTTTTCGGGGTCCTATATTTCCACCATCGGGTGTCGGCAAG
AGCTGCCTGCTTCTTCGATACAGCGACGATCAGTTTTCGGGGTCCTATAT
TTCCACCATCGGAATCGATTTCAAGATCAAATCCACGGTTTTGTTGGGGA
AGAGGGCAAAACTGCAGATTTGGGACACAGCAGGGCAAGAGAGATTCCGA
AACATCACTTCCGAATCGATTTCAAGATCAAATCCACGGTTTTGTTGGGG
AAGAGGGCAAAACTGCAGATTTGGGACACAGCAGGGCAAGAGAGATTCCG
AAACATCACTTCCGCTTACTACAGGGGGAGCATGGGGATCTTGTTAGTGT
ACGACGTGGCGGATATCAAATCGTTCAGGAACGTCAGTAACTGGATGCGG
CAGATCGAACTCAACGCGTCTCCCGACGTGAACATTACGCTGGTTGGCAA
CAAATGCGACGTCGGGGAGGACGAAAGGCTTACTACAGGGGGAGCATGGG
GATCTTGTTAGTGTACGACGTGGCGGATATCAAATCGTTCAGGAACGTCA
GTAACTGGATGCGGCAGATCGAACTCAACGCGTCTCCCGACGTGAACATT
ACGCTGGTTGGCAACAAATGCGACGTCGGGGAGGACGAAAGGGCGGTTTC
TTTCGAGCAGGGGCAGAGGTTGGCCGCCGACCACGGCGAGAAAGTCCGGT
TCTTCGAGACCAGCGCTCGGTCTAACGTGAACGTCACCGAAGCGTTCGAG
GGCTTAGCTACGGACGTCATACAGAGGCGGTTTCTTTCGAGCAGGGGCAG
AGGTTGGCCGCCGACCACGGCGAGAAAGTCCGGTTCTTCGAGACCAGCGC
TCGGTCTAACGTGAACGTCACCGAAGCGTTCGAGGGCTTAGCTACGGACG
TCATACAGAGCAGGCTGCAATCGCAAGATCAGGCGGCCGTCATCGGGGGA
CCGGCTTTGCAACTTGGCAGCGAAGAGCCCAAGAGCAAGCTCGCTGACTG
CTGCTGACAGGCTGCAATCGCAAGATCAGGCGGCCGTCATCGGGGGACCG
GCTTTGCAACTTGGCAGCGAAGAGCCCAAGAGCAAGCTCGCTGACTGCTG
CTGA
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