mRNA_H-canaliculatus_F_contig1224.1924.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1224.1924.1
Unique NamemRNA_H-canaliculatus_F_contig1224.1924.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1224.1924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1224contigH-canaliculatus_F_contig1224:12705..14281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1577
Cds size915
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1224.1924.1prot_H-canaliculatus_F_contig1224.1924.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1224 13199..14113 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928939.6546884-UTR-H-canaliculatus_F_contig1224:12704..131981622928939.6546884-UTR-H-canaliculatus_F_contig1224:12704..13198Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1224 12705..13198 +
1696845620.4019527-UTR-H-canaliculatus_F_contig1224:12704..131981696845620.4019527-UTR-H-canaliculatus_F_contig1224:12704..13198Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1224 12705..13198 +
1622928939.6805623-UTR-H-canaliculatus_F_contig1224:14113..142811622928939.6805623-UTR-H-canaliculatus_F_contig1224:14113..14281Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1224 14114..14281 +
1696845620.4208386-UTR-H-canaliculatus_F_contig1224:14113..142811696845620.4208386-UTR-H-canaliculatus_F_contig1224:14113..14281Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1224 14114..14281 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928939.6712263-CDS-H-canaliculatus_F_contig1224:13198..141131622928939.6712263-CDS-H-canaliculatus_F_contig1224:13198..14113Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1224 13199..14113 +
1696845620.4104342-CDS-H-canaliculatus_F_contig1224:13198..141131696845620.4104342-CDS-H-canaliculatus_F_contig1224:13198..14113Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1224 13199..14113 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1224.1924.1

>prot_H-canaliculatus_F_contig1224.1924.1 ID=prot_H-canaliculatus_F_contig1224.1924.1|Name=mRNA_H-canaliculatus_F_contig1224.1924.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=305bp
MLYQYICTDVERENAVSEQILHSQFGPNSETSCSPYRIREQPYPDPRYHA
GRAARVALLPMPRSRTLHLFAATSTSTSTTTLIYPLQVFPRRAGRPYIAQ
QAYHHRGCFSPVAVKPRLSLKRSRSYSLPLFQANTSVGKKWCTRGSKRAS
PVHPLPPPSPQPRSKPVTSSISWTAVPTKLRTPQQEPPPVNRTKKGATTS
ASRKANINPTATGQEDGGRVATQTATVAMRKTGTKRNDEWHIERTFATLP
TLSGHRRRCATRLLSEGSACTTRGGGRGDTRARTHTASTASVTIVYDWAP
SDAT*
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mRNA from alignment at H-canaliculatus_F_contig1224:12705..14281+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1224.1924.1 ID=mRNA_H-canaliculatus_F_contig1224.1924.1|Name=mRNA_H-canaliculatus_F_contig1224.1924.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1577bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1224:12705..14281+ (Hapterophycus canaliculatus Oshoro5f female)
CCCATACTTTCTGGCCTAGCCTGCCTTCTCCTCTTCGGCGCACAGACATG
TTTCGGTGTAGGTGCGCATACACACTGCGTTGTATGGTCTCTGTACAACT
GAAAACACGTACTGTACCAGCCGGGGTCACGCAGGAGGAGGTACTCAAAC
CGTTTTTTTTTTGTTTCTGAAGGCATGGATAACGTGGAAAAACAACTCAC
AGTCAAGTCGTTCCGCGAAAGAACCGAAGACAGTGGGTCGATGTGGGCGC
TCCGTGTGACATAGCACAGAATGTTAAATCCAGTCAAGCTACGGAGCCCC
AGAATCAAATACCAACATCATCCGTGACATGCCTCGCCCATCGACAACAG
CCACCCGTGCGACGTCTATCCACCCCTTGGGCCGATTGGTATGGTTACTG
CCGGCCGCAAAATAATCTACACAACGACCGAACGAGCCTCTTGCTACAGA
TTTAGCACCCACGCCGACACCGCCCCACCGGCATCCCTTGCTGTATGTTG
TACCAGTACATATGTACAGATGTTGAGAGAGAAAATGCGGTTTCTGAGCA
AATTCTTCACTCCCAATTTGGCCCCAACAGCGAAACAAGCTGCTCGCCAT
ACCGCATCCGCGAGCAACCTTATCCTGATCCACGGTATCATGCCGGGCGG
GCAGCACGCGTGGCACTACTCCCCATGCCACGCAGTCGTACGCTGCATCT
GTTCGCCGCAACCAGCACCAGCACCAGCACCACCACCCTCATCTATCCCT
TGCAGGTCTTCCCGCGTCGTGCAGGCCGCCCTTATATCGCGCAACAGGCA
TACCATCACCGCGGATGCTTTTCACCGGTTGCTGTGAAACCCCGCCTGAG
TCTCAAGCGTTCCAGGAGTTACTCCCTGCCTCTCTTCCAGGCCAACACGA
GCGTCGGCAAAAAGTGGTGCACACGTGGAAGCAAACGTGCGTCTCCTGTC
CACCCCCTCCCTCCCCCCTCTCCACAGCCGCGCAGCAAGCCCGTAACCTC
AAGCATCTCGTGGACCGCGGTACCAACAAAGCTCCGGACACCACAGCAAG
AACCACCACCAGTAAATCGAACAAAAAAGGGTGCCACAACGAGTGCCAGC
CGAAAGGCAAACATTAACCCGACTGCGACCGGGCAAGAGGACGGGGGAAG
GGTCGCGACCCAAACGGCGACGGTCGCTATGCGCAAGACAGGTACCAAAA
GAAACGACGAATGGCACATCGAAAGGACTTTCGCGACGCTTCCGACGCTC
TCTGGGCACCGCCGACGCTGCGCCACCCGCCTGTTGTCAGAGGGATCAGC
GTGTACGACACGAGGAGGGGGGAGAGGAGACACGCGTGCACGAACACACA
CAGCCAGTACGGCGTCCGTCACCATCGTCTACGATTGGGCGCCGTCCGAC
GCAACCTGATCGGTGGGATTTCTTCCGGGGGGGACGAGTACGACGAGAAC
GAAGAAGGGTCCTCGAAGCGAGACCCCGAAGTCTCCGAGTCGCTGCTCGC
GCTGCCGCCGCTGCTGCCGCTGCCGCCGCCGCTGCCGCTGCTACCACCTC
CACCGTCATCGCTGCCGCGACTACGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1224:12705..14281+

>mRNA_H-canaliculatus_F_contig1224.1924.1 ID=mRNA_H-canaliculatus_F_contig1224.1924.1|Name=mRNA_H-canaliculatus_F_contig1224.1924.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1830bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1224:12705..14281+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTTGTACCAGTACATATGTACAGATGTTGAGAGAGAAAATGCGGTTTC
TGAGCAAATTCTTCACTCCCAATTTGGCCCCAACAGCGAAACAAGCTGCT
CGCCATACCGCATCCGCGAGCAACCTTATCCTGATCCACGGTATCATGCC
GGGCGGGCAGCACGCGTGGCACTACTCCCCATGCCACGCAGTCGTACGCT
GCATCTGTTCGCCGCAACCAGCACCAGCACCAGCACCACCACCCTCATCT
ATCCCTTGCAGGTCTTCCCGCGTCGTGCAGGCCGCCCTTATATCGCGCAA
CAGGCATACCATCACCGCGGATGCTTTTCACCGGTTGCTGTGAAACCCCG
CCTGAGTCTCAAGCGTTCCAGGAGTTACTCCCTGCCTCTCTTCCAGGCCA
ACACGAGCGTCGGCAAAAAGTGGTGCACACGTGGAAGCAAACGTGCGTCT
CCTGTCCACCCCCTCCCTCCCCCCTCTCCACAGCCGCGCAGCAAGCCCGT
AACCTCAAGCATCTCGTGGACCGCGGTACCAACAAAGCTCCGGACACCAC
AGCAAGAACCACCACCAGTAAATCGAACAAAAAAGGGTGCCACAACGAGT
GCCAGCCGAAAGGCAAACATTAACCCGACTGCGACCGGGCAAGAGGACGG
GGGAAGGGTCGCGACCCAAACGGCGACGGTCGCTATGCGCAAGACAGGTA
CCAAAAGAAACGACGAATGGCACATCGAAAGGACTTTCGCGACGCTTCCG
ACGCTCTCTGGGCACCGCCGACGCTGCGCCACCCGCCTGTTGTCAGAGGG
ATCAGCGTGTACGACACGAGGAGGGGGGAGAGGAGACACGCGTGCACGAA
CACACACAGCCAGTACGGCGTCCGTCACCATCGTCTACGATTGGGCGCCG
TCCGACGCAACCTGAATGTTGTACCAGTACATATGTACAGATGTTGAGAG
AGAAAATGCGGTTTCTGAGCAAATTCTTCACTCCCAATTTGGCCCCAACA
GCGAAACAAGCTGCTCGCCATACCGCATCCGCGAGCAACCTTATCCTGAT
CCACGGTATCATGCCGGGCGGGCAGCACGCGTGGCACTACTCCCCATGCC
ACGCAGTCGTACGCTGCATCTGTTCGCCGCAACCAGCACCAGCACCAGCA
CCACCACCCTCATCTATCCCTTGCAGGTCTTCCCGCGTCGTGCAGGCCGC
CCTTATATCGCGCAACAGGCATACCATCACCGCGGATGCTTTTCACCGGT
TGCTGTGAAACCCCGCCTGAGTCTCAAGCGTTCCAGGAGTTACTCCCTGC
CTCTCTTCCAGGCCAACACGAGCGTCGGCAAAAAGTGGTGCACACGTGGA
AGCAAACGTGCGTCTCCTGTCCACCCCCTCCCTCCCCCCTCTCCACAGCC
GCGCAGCAAGCCCGTAACCTCAAGCATCTCGTGGACCGCGGTACCAACAA
AGCTCCGGACACCACAGCAAGAACCACCACCAGTAAATCGAACAAAAAAG
GGTGCCACAACGAGTGCCAGCCGAAAGGCAAACATTAACCCGACTGCGAC
CGGGCAAGAGGACGGGGGAAGGGTCGCGACCCAAACGGCGACGGTCGCTA
TGCGCAAGACAGGTACCAAAAGAAACGACGAATGGCACATCGAAAGGACT
TTCGCGACGCTTCCGACGCTCTCTGGGCACCGCCGACGCTGCGCCACCCG
CCTGTTGTCAGAGGGATCAGCGTGTACGACACGAGGAGGGGGGAGAGGAG
ACACGCGTGCACGAACACACACAGCCAGTACGGCGTCCGTCACCATCGTC
TACGATTGGGCGCCGTCCGACGCAACCTGA
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