mRNA_H-canaliculatus_F_contig12237.1921.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12237.1921.1
Unique NamemRNA_H-canaliculatus_F_contig12237.1921.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig12237.1921.1 vs. uniprot
Match: D7G2K8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K8_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 4.470e-24
Identity = 47/55 (85.45%), Postives = 48/55 (87.27%), Query Frame = 1
Query:   19 PARSNAYPSRRREWADGGAPLWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTMEV 183
            P   N Y   RREWADGGAPLWYFPLAGEFRLAEPPHITGGLLCEEMGLGKT+EV
Sbjct:  326 PRGLNGYFWERREWADGGAPLWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTIEV 380          
BLAST of mRNA_H-canaliculatus_F_contig12237.1921.1 vs. uniprot
Match: A0A835Z3A0_9STRA (SNF2-rel_dom domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3A0_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.770e-15
Identity = 40/66 (60.61%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   19 PARSNAYPSRRREWADGGAPLWYFPLAGEFRLAEPPHITG------------GLLCEEMGLGKTME 180
            P   N Y   RREWADGGAPLWYFPLAGE  L  PP  TG            GLLCEEMGLGKT+E
Sbjct:  484 PGGLNGYFWERREWADGGAPLWYFPLAGELGLHPPPRDTGEFXXXXXXXXXGGLLCEEMGLGKTVE 549          
BLAST of mRNA_H-canaliculatus_F_contig12237.1921.1 vs. uniprot
Match: A0A7S0NI25_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0NI25_MICPS)

HSP 1 Score: 71.2 bits (173), Expect = 3.180e-14
Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = 1
Query:   52 REWADGGAPLWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTMEV 183
            R WADGG   WYFPLAGE RL+EPP + GG+L EEMGLGKT+EV
Sbjct:   66 RRWADGGK-YWYFPLAGELRLSEPPLVRGGMLSEEMGLGKTLEV 108          
BLAST of mRNA_H-canaliculatus_F_contig12237.1921.1 vs. uniprot
Match: C1EH46_MICCC (SNF2 super family n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EH46_MICCC)

HSP 1 Score: 71.2 bits (173), Expect = 5.630e-13
Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = 1
Query:   52 REWADGGAPLWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTMEV 183
            R WADGG   WYFPLAGE RL+EPP + GG+L EEMGLGKT+EV
Sbjct:  381 RRWADGGK-YWYFPLAGELRLSEPPLVRGGMLSEEMGLGKTLEV 423          
BLAST of mRNA_H-canaliculatus_F_contig12237.1921.1 vs. uniprot
Match: A0A7S0DGF1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DGF1_9EUKA)

HSP 1 Score: 66.6 bits (161), Expect = 2.360e-11
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 1
Query:   52 REWADGGAPLWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTMEV 183
            R+W DGG+  +YFP AGE RL  PP + GGLLCEEMGLGKT+E+
Sbjct:  367 RQWLDGGS-YYYFPAAGELRLERPPTVRGGLLCEEMGLGKTLEM 409          
BLAST of mRNA_H-canaliculatus_F_contig12237.1921.1 vs. uniprot
Match: W7TYI3_9STRA (Dna excision repair protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TYI3_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.920e-10
Identity = 31/53 (58.49%), Postives = 35/53 (66.04%), Query Frame = 1
Query:   31 NAYPSRRREWADGGAP---LWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTME 180
            N Y   RR W D        +YFP AGE RL +PPH TGG+LCEEMGLGKT+E
Sbjct:  451 NEYFWERRAWKDAETAEECFYYFPDAGELRLEKPPHRTGGVLCEEMGLGKTVE 503          
BLAST of mRNA_H-canaliculatus_F_contig12237.1921.1 vs. uniprot
Match: A0A4D9CZ02_9STRA (Helicase ATP-binding domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ02_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.950e-10
Identity = 31/53 (58.49%), Postives = 35/53 (66.04%), Query Frame = 1
Query:   31 NAYPSRRREWADGGAP---LWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTME 180
            N Y   RR W D        +YFP AGE RL +PPH TGG+LCEEMGLGKT+E
Sbjct:  451 NEYFWERRAWKDAETAEECFYYFPDAGELRLEKPPHRTGGVLCEEMGLGKTVE 503          
BLAST of mRNA_H-canaliculatus_F_contig12237.1921.1 vs. uniprot
Match: A0A7S3V3S8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3V3S8_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.080e-9
Identity = 25/50 (50.00%), Postives = 32/50 (64.00%), Query Frame = 1
Query:   31 NAYPSRRREWADGGAPLWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTME 180
            N Y  R   W D   P ++  + GE R+ +PP + GGLLCEEMGLGKT+E
Sbjct:   41 NGYFWRACSWGDSKEPFYFSKVLGELRVEKPPLVRGGLLCEEMGLGKTLE 90          
BLAST of mRNA_H-canaliculatus_F_contig12237.1921.1 vs. uniprot
Match: R7QAQ4_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QAQ4_CHOCR)

HSP 1 Score: 55.1 bits (131), Expect = 2.820e-7
Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 1
Query:   31 NAYPSRRREWADG--GAP--LWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTME 180
            N Y    R ++D   G P   +YFPLAGE RL +PP + GG++ EEMGLGKT+E
Sbjct:   12 NQYFWEERSFSDSVDGCPNRYYYFPLAGELRLRKPPDVRGGMITEEMGLGKTVE 65          
BLAST of mRNA_H-canaliculatus_F_contig12237.1921.1 vs. uniprot
Match: A0A8J2SKG9_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SKG9_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 9.930e-7
Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 1
Query:   49 RREWADGGAPLWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTMEV 183
            +R +ADGG   W+ P  GE RL EPP  +GGLLC+E+ +GKT+E+
Sbjct:  362 KRAFADGGE-YWFAPDLGECRLEEPPTASGGLLCDEISMGKTVEL 405          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12237.1921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7G2K8_ECTSI4.470e-2485.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z3A0_9STRA3.770e-1560.61SNF2-rel_dom domain-containing protein n=1 Tax=Tri... [more]
A0A7S0NI25_MICPS3.180e-1472.73Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
C1EH46_MICCC5.630e-1372.73SNF2 super family n=1 Tax=Micromonas commoda (stra... [more]
A0A7S0DGF1_9EUKA2.360e-1165.91Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
W7TYI3_9STRA3.920e-1058.49Dna excision repair protein n=2 Tax=Nannochloropsi... [more]
A0A4D9CZ02_9STRA3.950e-1058.49Helicase ATP-binding domain-containing protein n=1... [more]
A0A7S3V3S8_9STRA3.080e-950.00Hypothetical protein (Fragment) n=1 Tax=Aplanochyt... [more]
R7QAQ4_CHOCR2.820e-751.85Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A8J2SKG9_9STRA9.930e-753.33Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12237contigH-canaliculatus_F_contig12237:228..410 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.4
Seed ortholog evalue2e-20
Seed eggNOG ortholog2880.D7G2K8
KEGG koko:K15710,ko:K15711
EggNOG free text desc.pyrimidine dimer repair by nucleotide-excision repair
EggNOG OGsCOG0141@1,COG0553@1,KOG1001@2759,KOG1002@2759
EC2.3.2.27
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size183
Cds size183
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928939.0808375-CDS-H-canaliculatus_F_contig12237:227..4101622928939.0808375-CDS-H-canaliculatus_F_contig12237:227..410Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12237 228..410 +
1696845620.3876197-CDS-H-canaliculatus_F_contig12237:227..4101696845620.3876197-CDS-H-canaliculatus_F_contig12237:227..410Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12237 228..410 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12237.1921.1prot_H-canaliculatus_F_contig12237.1921.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12237 228..410 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12237.1921.1

>prot_H-canaliculatus_F_contig12237.1921.1 ID=prot_H-canaliculatus_F_contig12237.1921.1|Name=mRNA_H-canaliculatus_F_contig12237.1921.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=61bp
MPLSFAPARSNAYPSRRREWADGGAPLWYFPLAGEFRLAEPPHITGGLLC
EEMGLGKTMEV
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mRNA from alignment at H-canaliculatus_F_contig12237:228..410+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12237.1921.1 ID=mRNA_H-canaliculatus_F_contig12237.1921.1|Name=mRNA_H-canaliculatus_F_contig12237.1921.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=183bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12237:228..410+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCCCTCTCCTTTGCCCCCGCCCGTTCCAATGCCTACCCGTCACGTCG CAGGGAGTGGGCGGACGGTGGCGCCCCGCTGTGGTACTTTCCCTTGGCGG GAGAGTTCCGATTGGCCGAGCCTCCCCATATTACCGGGGGTCTTTTGTGC GAGGAGATGGGGCTGGGAAAAACGATGGAGGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12237:228..410+

>mRNA_H-canaliculatus_F_contig12237.1921.1 ID=mRNA_H-canaliculatus_F_contig12237.1921.1|Name=mRNA_H-canaliculatus_F_contig12237.1921.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=366bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12237:228..410+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCCCTCTCCTTTGCCCCCGCCCGTTCCAATGCCTACCCGTCACGTCG
CAGGGAGTGGGCGGACGGTGGCGCCCCGCTGTGGTACTTTCCCTTGGCGG
GAGAGTTCCGATTGGCCGAGCCTCCCCATATTACCGGGGGTCTTTTGTGC
GAGGAGATGGGGCTGGGAAAAACGATGGAGGTGATGCCCCTCTCCTTTGC
CCCCGCCCGTTCCAATGCCTACCCGTCACGTCGCAGGGAGTGGGCGGACG
GTGGCGCCCCGCTGTGGTACTTTCCCTTGGCGGGAGAGTTCCGATTGGCC
GAGCCTCCCCATATTACCGGGGGTCTTTTGTGCGAGGAGATGGGGCTGGG
AAAAACGATGGAGGTG
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