mRNA_H-canaliculatus_F_contig12234.1918.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12234.1918.1
Unique NamemRNA_H-canaliculatus_F_contig12234.1918.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12234.1918.1 vs. uniprot
Match: A0A6H5KJ55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ55_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 1.430e-40
Identity = 76/95 (80.00%), Postives = 84/95 (88.42%), Query Frame = 1 
Query:    4 QVVDLDPEDSTVQVVCAEFFGGRVTMHSLCGG-----TRPGVTESWVLDENAGPAYSISAVDLRGGSPGGRPTHFLVTTHESSYNSYSFFAGSGG 273
            +VVDLD EDSTVQV+CAEFFGGRVTMHSL GG     ++P VTESWVLD+NAGPAYSI+A DLRGGSPGGRPTHFLVT HESSYN+YS FAG+GG
Sbjct:  819 EVVDLDREDSTVQVICAEFFGGRVTMHSLWGGGQLPGSQPSVTESWVLDDNAGPAYSITAADLRGGSPGGRPTHFLVTVHESSYNTYSLFAGAGG 913
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BLAST of mRNA_H-canaliculatus_F_contig12234.1918.1 vs. uniprot
Match: D7FTN5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN5_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 5.180e-40
Identity = 75/95 (78.95%), Postives = 83/95 (87.37%), Query Frame = 1 
Query:    4 QVVDLDPEDSTVQVVCAEFFGGRVTMHSLCGG-----TRPGVTESWVLDENAGPAYSISAVDLRGGSPGGRPTHFLVTTHESSYNSYSFFAGSGG 273
            +VVDLD EDSTVQV+CAEFFGGRVTMHSL GG     ++P VTESWVLD+NAGPAYSI+A DLRGGSPGGRPTHFLVT HESSYN+YS FA +GG
Sbjct:  477 EVVDLDREDSTVQVICAEFFGGRVTMHSLWGGGQLPGSQPSVTESWVLDDNAGPAYSITAADLRGGSPGGRPTHFLVTVHESSYNTYSLFAAAGG 571
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BLAST of mRNA_H-canaliculatus_F_contig12234.1918.1 vs. uniprot
Match: A0A836CJ47_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ47_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 4.120e-15
Identity = 45/83 (54.22%), Postives = 53/83 (63.86%), Query Frame = 1 
Query:    7 VVDLDPEDSTVQVVCAEFFGGRVTMHSLCGG-----TRPGVTESWVLDENAGPAYSISAVDLRGGSPGGRPTHFLVTTHESSY 240
            +VDLD  D TV+V  AEFF  R+TMHS+  G     T+  V +SWVLD N GPAYS+ A DL G   G  PTH LVT+HE  Y
Sbjct:  132 LVDLDDADGTVEVFAAEFFARRLTMHSVRWGDARRGTQSQVVQSWVLDSNCGPAYSVVAADLLGTGLG--PTHLLVTSHECLY 212
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BLAST of mRNA_H-canaliculatus_F_contig12234.1918.1 vs. uniprot
Match: A0A7S4DAE7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAE7_HETAK)

HSP 1 Score: 79.0 bits (193), Expect = 1.060e-13
Identity = 38/92 (41.30%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:    4 QVVDLDPEDSTVQVVCAEFFGGRVTMHSLC------GGTRPGVTESWVLDENAGPAYSISAVDLRGGSPGGRPTHFLVTTHESSYNSYSFFA 261
            +V+D+DP+D ++++V AEFF  R+T+ SL       G  +  V +  V+D   GPAY ++A +LR G PG  PTH LVT+H   Y+  S F+
Sbjct:  281 EVIDIDPDDDSIEIVAAEFFNERLTLTSLAPRRDWLGPNKIQVKQKMVIDAGCGPAYGVTAANLRTGRPGDPPTHLLVTSHACQYDPASDFS 372
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BLAST of mRNA_H-canaliculatus_F_contig12234.1918.1 vs. uniprot
Match: A0A7S0E016_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E016_9CRYP)

HSP 1 Score: 65.9 bits (159), Expect = 1.840e-9
Identity = 37/81 (45.68%), Postives = 51/81 (62.96%), Query Frame = 1 
Query:    4 QVVDLDPEDSTVQVVCAEFFGGRVTMHSL-----CGGTRPGVTESWVLDENAGPAYSISAVDLRGGSPGGRPTHFLVTTHE 231
            +V+DLDPED TV+VV AEFF  R++  S+     C    P V ++ V+D++ G AYS+ A DL G +     +H LVTTHE
Sbjct:   31 EVLDLDPEDETVEVVAAEFFRQRLSFFSIKWDESC--KSPRVVQAEVIDDSLGQAYSVVAADLEGPN-----SHLLVTTHE 104
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BLAST of mRNA_H-canaliculatus_F_contig12234.1918.1 vs. uniprot
Match: L1JIM1_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JIM1_GUITC)

HSP 1 Score: 66.2 bits (160), Expect = 2.680e-9
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = 1 
Query:    4 QVVDLDPEDSTVQVVCAEFFGGRVTMHSL-----CGGTRPGVTESWVLDENAGPAYSISAVDLRGGSPGGRPTHFLVTTHE 231
            +VVDLDPED TV+VV AEFF  R++  SL     C    P V ++ ++D+  G AYS+ A DL G +     +H LVTTHE
Sbjct:  347 EVVDLDPEDDTVEVVAAEFFRQRLSFFSLRWDETC--KSPKVVQTELIDDKLGQAYSVVAADLEGPN-----SHLLVTTHE 420
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BLAST of mRNA_H-canaliculatus_F_contig12234.1918.1 vs. uniprot
Match: A0A7S1G010_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G010_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.150e-8
Identity = 38/99 (38.38%), Postives = 49/99 (49.49%), Query Frame = 1 
Query:    7 VVDLDPEDSTVQVVCAEFFGGRVTMHSLCGGTRPGVTESWVLDENAGPAYSISAVDLR---------------------GGS---PGGRPTHFLVTTHE 231
            V DLDP D T+ ++ A+FFG +VT HSL  G RP V    V+D++ G +Y I  V+L                      GG    PG   TH LVT+HE
Sbjct:  312 VADLDPTDDTIDIIAAQFFGKKVTCHSLRRGPRPEVISRHVIDDDCGASYGILLVNLSEKDDKDKTHVPSAPLVVAPGTGGDILRPGDTFTHVLVTSHE 410
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BLAST of mRNA_H-canaliculatus_F_contig12234.1918.1 vs. uniprot
Match: A0A7S4CRI4_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CRI4_9EUGL)

HSP 1 Score: 63.5 bits (153), Expect = 1.820e-8
Identity = 33/78 (42.31%), Postives = 44/78 (56.41%), Query Frame = 1 
Query:    7 VVDLDPEDSTVQVVCAEFFGGRVTMHSLC---GGTRPGVTESWVLDENAGPAYSISAVDLRGGSPGGRPTHFLVTTHE 231
            VVDLDP D TV+V  +EFF  R+T+H +        P V ++ V+D   GPAY +   DL G       +H LVTTH+
Sbjct:   58 VVDLDPNDETVEVFASEFFAERLTLHRIAWSRASDAPFVVDTQVIDNGLGPAYGVVVADLTGPR-----SHVLVTTHK 130
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BLAST of mRNA_H-canaliculatus_F_contig12234.1918.1 vs. uniprot
Match: K0RTF0_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RTF0_THAOC)

HSP 1 Score: 58.5 bits (140), Expect = 1.060e-6
Identity = 35/100 (35.00%), Postives = 47/100 (47.00%), Query Frame = 1 
Query:    7 VVDLDPEDSTVQVVCAEFFGGRVTMHSLCGGTRPGVTESWVLDENAGPAYSISAVDLRG----------------------GSPGGRPTHFLVTTHESSY 240
            V DLD ED TV+++ ++FFG R+T+HSL  G  P +    V+D   G A+S    DL G                         G   +H LVT+HE SY
Sbjct:  244 VADLDGEDDTVEIIASQFFGKRLTLHSLQIGVDPKIVFRRVIDHGCGSAFSSVLADLDGLADVRRSDLLPRVVDNGSTVATSKEGDAFSHVLVTSHECSY 343
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BLAST of mRNA_H-canaliculatus_F_contig12234.1918.1 vs. uniprot
Match: A0A7S0PKA3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0PKA3_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 6.970e-6
Identity = 32/100 (32.00%), Postives = 50/100 (50.00%), Query Frame = 1 
Query:    7 VVDLDPEDSTVQVVCAEFFGGRVTMHSLCGGTRPGVTESWVLDENAGPAYSISAVDLRGG----------------------SPGGRPTHFLVTTHESSY 240
            V DLD +D++V+++ ++FFG +VT+HS+  G  P V    V+D+  G ++S    DLR                        S G   +H LVT+HE S+
Sbjct:  114 VADLDEKDNSVEIIASQFFGKKVTLHSVERGLNPRVNFRRVIDDRCGSSFSAILSDLRPNCLSIEGEIDPKVIDNGSTIQTLSAGDTFSHLLVTSHECSF 213
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12234.1918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5KJ55_9PHAE1.430e-4080.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTN5_ECTSI5.180e-4078.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CJ47_9STRA4.120e-1554.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4DAE7_HETAK1.060e-1341.30Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0E016_9CRYP1.840e-945.68Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
L1JIM1_GUITC2.680e-946.91Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
A0A7S1G010_9STRA1.150e-838.38Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S4CRI4_9EUGL1.820e-842.31Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
K0RTF0_THAOC1.060e-635.00Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S0PKA3_9STRA6.970e-632.00Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12234contigH-canaliculatus_F_contig12234:1052..2244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue2.4e-08
Seed eggNOG ortholog55529.EKX48363
KEGG koko:K16465,ko:K16466
KEGG TC1.I.1
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0028@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03036
Hectar predicted targeting categoryother localisation
Exons3
Model size579
Cds size579
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12234.1918.1prot_H-canaliculatus_F_contig12234.1918.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12234 1052..2244 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928937.7132058-CDS-H-canaliculatus_F_contig12234:1051..12601622928937.7132058-CDS-H-canaliculatus_F_contig12234:1051..1260Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12234 1052..1260 -
1696845620.2660508-CDS-H-canaliculatus_F_contig12234:1051..12601696845620.2660508-CDS-H-canaliculatus_F_contig12234:1051..1260Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12234 1052..1260 -
1622928938.774906-CDS-H-canaliculatus_F_contig12234:1401..15921622928938.774906-CDS-H-canaliculatus_F_contig12234:1401..1592Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12234 1402..1592 -
1696845620.2783597-CDS-H-canaliculatus_F_contig12234:1401..15921696845620.2783597-CDS-H-canaliculatus_F_contig12234:1401..1592Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12234 1402..1592 -
1622928938.7860296-CDS-H-canaliculatus_F_contig12234:2065..22441622928938.7860296-CDS-H-canaliculatus_F_contig12234:2065..2244Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12234 2066..2244 -
1696845620.2884436-CDS-H-canaliculatus_F_contig12234:2065..22441696845620.2884436-CDS-H-canaliculatus_F_contig12234:2065..2244Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12234 2066..2244 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12234.1918.1

>prot_H-canaliculatus_F_contig12234.1918.1 ID=prot_H-canaliculatus_F_contig12234.1918.1|Name=mRNA_H-canaliculatus_F_contig12234.1918.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=193bp
MQVVDLDPEDSTVQVVCAEFFGGRVTMHSLCGGTRPGVTESWVLDENAGP
AYSISAVDLRGGSPGGRPTHFLVTTHESSYNSYSFFAGSGGFNANSYSAV
STTTTAAATTAAATAAARPAFGMANVGSGRPVPASPARPPPPPPPPPSRG
GGGRWGGVVTGGPKERRWQRREEGGTSGAGGSLLAYEIPEDW*
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mRNA from alignment at H-canaliculatus_F_contig12234:1052..2244-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12234.1918.1 ID=mRNA_H-canaliculatus_F_contig12234.1918.1|Name=mRNA_H-canaliculatus_F_contig12234.1918.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1193bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12234:1052..2244- (Hapterophycus canaliculatus Oshoro5f female)
ATGCAGGTGGTGGATCTAGATCCGGAGGACAGCACGGTGCAGGTGGTGTG
CGCCGAGTTTTTCGGCGGCCGGGTTACCATGCACAGTCTTTGCGGGGGCA
CGCGGCCGGGCGTAACCGAGTCGTGGGTGCTGGATGAGAACGCCGGGCCG
GCCTACTCGATTTCCGCCGTCGACTTGCGGTGAGGTTTTTGTTCGATAAC
GGCAGCGCCGGCCTTGACGTCCCTCTTTCTTTCCCTCCGTCGGTGGATGT
CCTTGCTTGCTGGCTTTGTGGTGGTGACAAGCGTCGGTCGTTTCAGGACC
GGCTTGAGGTAGAAACATCTGTGGATATACTCTGGTGGTGCGCTTGAGGA
GGTTGCTGACGGGCAGCAAGCGGAGGACGCTTTGCTTCTTTCTGGCAACC
GTGGTAACGCATGCGGCCACGCGTGGCAGCATATGACGATTTAGGAGACA
AGACGGAGGCACCGCCACGTCAAAGCCACGCGCGTAAACGCGATGGTGAC
TCGACCTTGGCGCAGACATGCAGCGGCCAACGAAGCACTGAACAAGAAAT
GGTGGCAACCCGCGTCCTCCCACCTGACCCTCTCCCTGCACGTCCCGCCG
CACGCACGTGAACCCCCCGAAAATACATCCGGGCATCGTCGACACGGTAT
AGCGGCGGCTCCCCCGGAGGGCGCCCAACGCACTTCCTCGTGACCACCCA
CGAGTCGTCCTACAACTCCTATTCTTTCTTCGCCGGTTCCGGAGGCTTCA
ACGCCAATTCCTACTCTGCCGTTTCCACCACCACCACCGCCGCCGCCACC
ACCGCCGCCGCCACCGCCGCCGCGAGACCTGCCTTCGGAATGGGTTTTTC
CTCTATTACCACCGGCACCGCCGCCGCCGCCGCCGAAGTCGGCGGCGCGG
ACGGAGCCGCTGTCGACACCGGCGCCAGGCGGCGGTCTACCACGACGGAT
TTCGATCCCGCGGGTGCCAGGGCGCTCGGTGGAGCAAATGTCGGGTCCGG
CAGACCAGTGCCGGCGTCTCCGGCGAGACCGCCGCCGCCGCCGCCGCCGC
CACCAAGCCGGGGTGGAGGTGGTAGGTGGGGCGGAGTTGTCACCGGCGGT
CCGAAGGAGCGGCGTTGGCAGCGTCGGGAAGAGGGTGGAACGAGCGGTGC
GGGTGGCTCGCTGCTGGCGTACGAAATCCCGGAGGACTGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12234:1052..2244-

>mRNA_H-canaliculatus_F_contig12234.1918.1 ID=mRNA_H-canaliculatus_F_contig12234.1918.1|Name=mRNA_H-canaliculatus_F_contig12234.1918.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1158bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12234:1052..2244- (Hapterophycus canaliculatus Oshoro5f female)
ATGCAGGTGGTGGATCTAGATCCGGAGGACAGCACGGTGCAGGTGGTGTG
CGCCGAGTTTTTCGGCGGCCGGGTTACCATGCACAGTCTTTGCGGGGGCA
CGCGGCCGGGCGTAACCGAGTCGTGGGTGCTGGATGAGAACGCCGGGCCG
GCCTACTCGATTTCCGCCGTCGACTTGCGATGCAGGTGGTGGATCTAGAT
CCGGAGGACAGCACGGTGCAGGTGGTGTGCGCCGAGTTTTTCGGCGGCCG
GGTTACCATGCACAGTCTTTGCGGGGGCACGCGGCCGGGCGTAACCGAGT
CGTGGGTGCTGGATGAGAACGCCGGGCCGGCCTACTCGATTTCCGCCGTC
GACTTGCGCGGCGGCTCCCCCGGAGGGCGCCCAACGCACTTCCTCGTGAC
CACCCACGAGTCGTCCTACAACTCCTATTCTTTCTTCGCCGGTTCCGGAG
GCTTCAACGCCAATTCCTACTCTGCCGTTTCCACCACCACCACCGCCGCC
GCCACCACCGCCGCCGCCACCGCCGCCGCGAGACCTGCCTTCGGAATGGC
GGCGGCTCCCCCGGAGGGCGCCCAACGCACTTCCTCGTGACCACCCACGA
GTCGTCCTACAACTCCTATTCTTTCTTCGCCGGTTCCGGAGGCTTCAACG
CCAATTCCTACTCTGCCGTTTCCACCACCACCACCGCCGCCGCCACCACC
GCCGCCGCCACCGCCGCCGCGAGACCTGCCTTCGGAATGGCAAATGTCGG
GTCCGGCAGACCAGTGCCGGCGTCTCCGGCGAGACCGCCGCCGCCGCCGC
CGCCGCCACCAAGCCGGGGTGGAGGTGGTAGGTGGGGCGGAGTTGTCACC
GGCGGTCCGAAGGAGCGGCGTTGGCAGCGTCGGGAAGAGGGTGGAACGAG
CGGTGCGGGTGGCTCGCTGCTGGCGTACGAAATCCCGGAGGACTGGTGAC
AAATGTCGGGTCCGGCAGACCAGTGCCGGCGTCTCCGGCGAGACCGCCGC
CGCCGCCGCCGCCGCCACCAAGCCGGGGTGGAGGTGGTAGGTGGGGCGGA
GTTGTCACCGGCGGTCCGAAGGAGCGGCGTTGGCAGCGTCGGGAAGAGGG
TGGAACGAGCGGTGCGGGTGGCTCGCTGCTGGCGTACGAAATCCCGGAGG
ACTGGTGA
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