mRNA_H-canaliculatus_F_contig12232.1917.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12232.1917.1
Unique NamemRNA_H-canaliculatus_F_contig12232.1917.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12232.1917.1 vs. uniprot
Match: D7G7C9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7C9_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 2.140e-35
Identity = 69/90 (76.67%), Postives = 78/90 (86.67%), Query Frame = 3 
Query:  417 DNPQSAKPIIRPTRPEMKPQRPLVDMELRYEIIKGNHITPLTQNVFLNTPVDAIDPLLGVRQGMKKEFLKTVNHLGQILVDWLEESAPPI 686
            D  +  K +I+  +  ++ +RPLVDMELRYEIIKGNHITPLTQNVFL TPVD+IDPL GVRQGMKKEFLKTVNHLGQILVDWLEESAPP+
Sbjct:  195 DESEGMKDVIQEGKTLLRMRRPLVDMELRYEIIKGNHITPLTQNVFLKTPVDSIDPLFGVRQGMKKEFLKTVNHLGQILVDWLEESAPPV 284
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BLAST of mRNA_H-canaliculatus_F_contig12232.1917.1 vs. uniprot
Match: A0A6H5KE48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE48_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 5.060e-34
Identity = 68/90 (75.56%), Postives = 78/90 (86.67%), Query Frame = 3 
Query:  417 DNPQSAKPIIRPTRPEMKPQRPLVDMELRYEIIKGNHITPLTQNVFLNTPVDAIDPLLGVRQGMKKEFLKTVNHLGQILVDWLEESAPPI 686
            D  +  K +I+  +  ++ +RPLVDMELRYE+IKGNHITPLTQNVFL TPVD+IDPL GVRQGMKKEFLKTVNHLGQILVDWLEESAPP+
Sbjct:  304 DESERMKDVIQEGKTLLRMRRPLVDMELRYEVIKGNHITPLTQNVFLKTPVDSIDPLFGVRQGMKKEFLKTVNHLGQILVDWLEESAPPL 393
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BLAST of mRNA_H-canaliculatus_F_contig12232.1917.1 vs. uniprot
Match: A0A835ZET8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZET8_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.080e-13
Identity = 40/88 (45.45%), Postives = 61/88 (69.32%), Query Frame = 3 
Query:  417 DNPQSAKPIIRPTRPEMKPQRPLVDMELRYEIIKGNHITPLTQNVFLNTPVDAIDPL---LGVRQGMKKEFLKTVNHLGQILVDWLEE 671
            D  +  + +I+  +  ++ +RP+VDM+LRYE++ GNHITPLTQ++F   P     PL     +RQ  +++FL+TVN LGQ+LV+WLEE
Sbjct:  214 DESEEVREVIQAGKTLLRMRRPMVDMDLRYEVLTGNHITPLTQDIF-TPPQPLAGPLPDACPIRQRARQDFLRTVNDLGQVLVEWLEE 300
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BLAST of mRNA_H-canaliculatus_F_contig12232.1917.1 vs. uniprot
Match: A0A7S2C1E7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C1E7_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 3.360e-13
Identity = 32/85 (37.65%), Postives = 56/85 (65.88%), Query Frame = 3 
Query:  417 DNPQSAKPIIRPTRPEMKPQRPLVDMELRYEIIKGNHITPLTQNVFLNTPVDAIDPLLGVRQGMKKEFLKTVNHLGQILVDWLEE 671
            D     + +++  +  M+ +RP++D ++R + I G HITPLTQ++F++TP+D++DPLL +R   ++ FL TV  +   +V WL E
Sbjct:   21 DESDELERVLQEAKGIMRLKRPMIDFDIRLKTITGTHITPLTQDIFVDTPLDSLDPLLPLRSAARENFLNTVGSVKSEIVSWLNE 105
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BLAST of mRNA_H-canaliculatus_F_contig12232.1917.1 vs. uniprot
Match: A0A0G4G6R9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4G6R9_VITBC)

HSP 1 Score: 70.1 bits (170), Expect = 4.760e-9
Identity = 30/60 (50.00%), Postives = 43/60 (71.67%), Query Frame = 3 
Query:  492 MELRYEIIKGNHITPLTQNVFLNTPVDAIDPLLGVRQGMKKEFLKTVNHLGQILVDWLEE 671
            +E+R E+I+G H+TPLTQN+FL+TP D IDPLL +R+  +  FL+TV  +   +  WL E
Sbjct:  667 LEIRKEVIRGTHVTPLTQNIFLDTPFDPIDPLLPIRRVARGNFLRTVEGVQTSITRWLSE 726
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12232.1917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G7C9_ECTSI2.140e-3576.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KE48_9PHAE5.060e-3475.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZET8_9STRA1.080e-1345.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2C1E7_9STRA3.360e-1337.65Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A0G4G6R9_VITBC4.760e-950.00Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12232contigH-canaliculatus_F_contig12232:1164..2613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.7
Seed ortholog evalue7.6e-33
Seed eggNOG ortholog2880.D7G7C9
EggNOG free text desc.Protein of unknown function (DUF1350)
EggNOG OGs2QU9N@2759,COG1084@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-04_003270.1
Exons2
Model size1436
Cds size405
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12232.1917.1prot_H-canaliculatus_F_contig12232.1917.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12232 1576..1980 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928937.6434202-UTR-H-canaliculatus_F_contig12232:1163..15191622928937.6434202-UTR-H-canaliculatus_F_contig12232:1163..1519Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12232 1164..1519 +
1696845620.225672-UTR-H-canaliculatus_F_contig12232:1163..15191696845620.225672-UTR-H-canaliculatus_F_contig12232:1163..1519Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12232 1164..1519 +
1622928937.654158-UTR-H-canaliculatus_F_contig12232:1533..15751622928937.654158-UTR-H-canaliculatus_F_contig12232:1533..1575Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12232 1534..1575 +
1696845620.2378323-UTR-H-canaliculatus_F_contig12232:1533..15751696845620.2378323-UTR-H-canaliculatus_F_contig12232:1533..1575Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12232 1534..1575 +
1622928937.681172-UTR-H-canaliculatus_F_contig12232:1980..26131622928937.681172-UTR-H-canaliculatus_F_contig12232:1980..2613Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12232 1981..2613 +
1696845620.2557168-UTR-H-canaliculatus_F_contig12232:1980..26131696845620.2557168-UTR-H-canaliculatus_F_contig12232:1980..2613Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12232 1981..2613 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928937.6691284-CDS-H-canaliculatus_F_contig12232:1575..19801622928937.6691284-CDS-H-canaliculatus_F_contig12232:1575..1980Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12232 1576..1980 +
1696845620.246918-CDS-H-canaliculatus_F_contig12232:1575..19801696845620.246918-CDS-H-canaliculatus_F_contig12232:1575..1980Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12232 1576..1980 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12232.1917.1

>prot_H-canaliculatus_F_contig12232.1917.1 ID=prot_H-canaliculatus_F_contig12232.1917.1|Name=mRNA_H-canaliculatus_F_contig12232.1917.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=135bp
MIYLFCDNPQSAKPIIRPTRPEMKPQRPLVDMELRYEIIKGNHITPLTQN
VFLNTPVDAIDPLLGVRQGMKKEFLKTVNHLGQILVDWLEESAPPISPPN
VDASGGGGGAGAGVGGGFPSVATAPPAGGVNGPL*
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mRNA from alignment at H-canaliculatus_F_contig12232:1164..2613+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12232.1917.1 ID=mRNA_H-canaliculatus_F_contig12232.1917.1|Name=mRNA_H-canaliculatus_F_contig12232.1917.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1450bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12232:1164..2613+ (Hapterophycus canaliculatus Oshoro5f female)
GCTGCTGCTATGGTAGTTGTCTTCGCTGCTGTGGTAAAATGTATGTTCGT
TTGATTGGGCGTCGTGTCGCCAAAGAGCGTCCAAGAGCTGCCGGGGACTT
GGACGGCGAGGGTATCAGGATAAGGAAGACCATCGTTGGGGAGGCGGTGG
GATCTCGGCTAGGATCTGTGAGAAAATCTGCTGATTTCCTGCACGCACTA
GTCGTGCTCCGGAGTGACCTACCCTCGGGCAGGATTCAGACGCCGCCTGC
GGGCCAACGCAGCGCTCGAACACGAAGCCCCTTCCCAACGTGCTGAACCC
CTCTCGGCACCGGAAAGCCCCCTCTGCTGGCTGTTGCCATTGGTCCGGTC
GCCCTCGCTCTGCTGTGAAGATTGGCATCCACACCACGAGAAGCGCGTCT
ATTTACAGAAACATGATTTACCTTTTTTGTGACAACCCCCAATCGGCAAA
ACCAATAATCCGACCGACCCGGCCCGAAATGAAACCGCAGCGGCCGCTGG
TCGACATGGAGCTGCGGTACGAGATCATCAAGGGCAACCACATCACCCCG
CTCACGCAAAACGTGTTCCTGAACACGCCGGTCGACGCCATCGACCCACT
CTTGGGCGTGAGGCAGGGCATGAAGAAGGAGTTCCTTAAGACCGTCAACC
ATCTCGGACAGATACTGGTGGACTGGCTCGAGGAATCGGCGCCGCCGATA
TCGCCACCCAATGTTGATGCCAGCGGCGGCGGCGGGGGTGCGGGGGCCGG
CGTCGGCGGTGGGTTTCCTTCGGTGGCGACGGCGCCGCCAGCCGGGGGTG
TGAACGGACCCCTGTGAAAGTTGAAATCAAAGGTGTTCCGTCTCTCGCAA
GGTTTCCCCGGGAAAATATGTGCGTTGAGATGGTGTTTCTGAAGCGGCGG
CGGGAACCGTTCTTGGCGCAAGTTCGTCAGCTTGAAGCGTGCTTCGGGGT
GGTTTTGAGGATCGAGGGAGCACAGCTCAGGGGTTGGCCTATGTTTTTGT
CATCATTTAACTACGTTTTGGGCAATTGTAGCTGCCTGCTGGCACGTCAG
GTGATTGGTGCGTGTTGTTCCCTTCGCCATTGCGTTGAGATCCAGAGCCT
GTAGCCACCGTTCCTGGGTATTACGGATGCTGCTGATGGTAATGGTGCCA
TAGCCGCCTCCAGAACATGGGATAGAAGGTAGATTAGTTATCGCAGTTCT
ACTCCCTCGAGGGAATTGTTTTAGAGTGGCAGCCACCTCATTCGAAGATG
GAGGAGAATATAAGCGGGGGACAGGGCATAGGGGATCCGGATCTTGCTCT
CCGCTGCATACTTTGTTGACGACAGGCGGACAGAGTAGGGGACTATTGGA
AGATTTTGACCGGTTCTTGGAGTAAGCCGGGATAGCCGGTGCTTTTGCTG
TTGTTGTTACGGGACTACCGCACTAAGGCCCCGCACATTCCGCCGGCACC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12232:1164..2613+

>mRNA_H-canaliculatus_F_contig12232.1917.1 ID=mRNA_H-canaliculatus_F_contig12232.1917.1|Name=mRNA_H-canaliculatus_F_contig12232.1917.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=810bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12232:1164..2613+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATTTACCTTTTTTGTGACAACCCCCAATCGGCAAAACCAATAATCCG
ACCGACCCGGCCCGAAATGAAACCGCAGCGGCCGCTGGTCGACATGGAGC
TGCGGTACGAGATCATCAAGGGCAACCACATCACCCCGCTCACGCAAAAC
GTGTTCCTGAACACGCCGGTCGACGCCATCGACCCACTCTTGGGCGTGAG
GCAGGGCATGAAGAAGGAGTTCCTTAAGACCGTCAACCATCTCGGACAGA
TACTGGTGGACTGGCTCGAGGAATCGGCGCCGCCGATATCGCCACCCAAT
GTTGATGCCAGCGGCGGCGGCGGGGGTGCGGGGGCCGGCGTCGGCGGTGG
GTTTCCTTCGGTGGCGACGGCGCCGCCAGCCGGGGGTGTGAACGGACCCC
TGTGAATGATTTACCTTTTTTGTGACAACCCCCAATCGGCAAAACCAATA
ATCCGACCGACCCGGCCCGAAATGAAACCGCAGCGGCCGCTGGTCGACAT
GGAGCTGCGGTACGAGATCATCAAGGGCAACCACATCACCCCGCTCACGC
AAAACGTGTTCCTGAACACGCCGGTCGACGCCATCGACCCACTCTTGGGC
GTGAGGCAGGGCATGAAGAAGGAGTTCCTTAAGACCGTCAACCATCTCGG
ACAGATACTGGTGGACTGGCTCGAGGAATCGGCGCCGCCGATATCGCCAC
CCAATGTTGATGCCAGCGGCGGCGGCGGGGGTGCGGGGGCCGGCGTCGGC
GGTGGGTTTCCTTCGGTGGCGACGGCGCCGCCAGCCGGGGGTGTGAACGG
ACCCCTGTGA
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