mRNA_H-canaliculatus_F_contig1223.1915.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1223.1915.1
Unique NamemRNA_H-canaliculatus_F_contig1223.1915.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1223.1915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1223contigH-canaliculatus_F_contig1223:13109..15066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1958
Cds size1128
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1223.1915.1prot_H-canaliculatus_F_contig1223.1915.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1223 13152..14279 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928937.523344-UTR-H-canaliculatus_F_contig1223:13108..131511622928937.523344-UTR-H-canaliculatus_F_contig1223:13108..13151Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1223 13109..13151 +
1696845620.1531243-UTR-H-canaliculatus_F_contig1223:13108..131511696845620.1531243-UTR-H-canaliculatus_F_contig1223:13108..13151Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1223 13109..13151 +
1622928937.5451868-UTR-H-canaliculatus_F_contig1223:14279..150661622928937.5451868-UTR-H-canaliculatus_F_contig1223:14279..15066Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1223 14280..15066 +
1696845620.1784534-UTR-H-canaliculatus_F_contig1223:14279..150661696845620.1784534-UTR-H-canaliculatus_F_contig1223:14279..15066Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1223 14280..15066 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928937.5339048-CDS-H-canaliculatus_F_contig1223:13151..142791622928937.5339048-CDS-H-canaliculatus_F_contig1223:13151..14279Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1223 13152..14279 +
1696845620.1671379-CDS-H-canaliculatus_F_contig1223:13151..142791696845620.1671379-CDS-H-canaliculatus_F_contig1223:13151..14279Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1223 13152..14279 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1223.1915.1

>prot_H-canaliculatus_F_contig1223.1915.1 ID=prot_H-canaliculatus_F_contig1223.1915.1|Name=mRNA_H-canaliculatus_F_contig1223.1915.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=376bp
MDESRATTQDGDRAASSTGEGAGKWCSDTPETAERLTEPSAVTAAGGSKQ
FPSVRSVGVGTGSPTAKEKSDAEEPKGVGVGTSPGTSPRMTIKMNAFGGR
QTGPGISSPKSRGVAENSSQPCPGASPKASSPPAHSSATKRGRDTGESRS
GRSPLIAGATEDGVFGEDEANVDALPASHSLGSTQVVSPALETVCDATSK
GVGAACDDLEQTLVAFHACDGEVRGRGESVSDVRDAVDRRAGDRSDMRCG
NALDGGVPQTGIDDASKRDVGHQPRKNKKNRVAPIDLRQTADRTPTGKKT
LAGRDEGAQDGGGEVRKQRGHAQGGDRVDSTKGEIHAVEKERKSVDAGVQ
YVRPPEASEGWAKGQAGGSCGCSVM*
back to top

mRNA from alignment at H-canaliculatus_F_contig1223:13109..15066+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1223.1915.1 ID=mRNA_H-canaliculatus_F_contig1223.1915.1|Name=mRNA_H-canaliculatus_F_contig1223.1915.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1958bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1223:13109..15066+ (Hapterophycus canaliculatus Oshoro5f female)
CGCTCCAAAACGAGGTGATCTTGAGACGGCGGCAACTCCGGGGATGGACG
AGTCAAGAGCGACCACTCAGGATGGTGACCGAGCGGCATCGAGTACCGGT
GAGGGCGCCGGGAAATGGTGCAGCGACACCCCGGAAACGGCTGAAAGGCT
GACAGAGCCATCCGCCGTGACGGCGGCGGGCGGTTCCAAGCAATTTCCGT
CAGTGAGAAGCGTTGGGGTTGGAACAGGCAGCCCGACTGCTAAAGAGAAA
AGCGACGCCGAGGAACCAAAGGGCGTTGGGGTAGGAACCAGCCCTGGCAC
TAGCCCAAGGATGACTATCAAGATGAATGCTTTCGGAGGTCGACAGACTG
GTCCGGGGATATCGAGCCCAAAGAGTCGAGGGGTCGCCGAAAATTCAAGC
CAACCTTGTCCCGGCGCCAGCCCCAAGGCCTCGAGTCCACCAGCGCATTC
CAGCGCTACGAAGAGAGGTCGCGACACAGGCGAGAGCAGATCCGGTAGAA
GCCCACTGATAGCCGGAGCGACGGAAGATGGTGTATTTGGCGAAGACGAA
GCAAATGTAGATGCTCTTCCTGCGAGCCACAGCCTTGGATCGACGCAGGT
GGTCTCTCCTGCTTTGGAGACTGTTTGCGATGCGACCAGCAAGGGCGTGG
GGGCGGCTTGCGATGACCTTGAACAAACACTCGTGGCCTTCCACGCTTGC
GACGGCGAGGTGAGAGGCCGCGGGGAGTCTGTAAGCGACGTGCGCGACGC
TGTGGATCGGCGTGCGGGGGATCGATCTGATATGAGGTGTGGAAATGCTC
TCGATGGTGGCGTACCACAGACTGGTATTGACGACGCTTCAAAGCGTGAC
GTGGGCCACCAACCCAGAAAAAATAAGAAAAACCGGGTGGCTCCGATAGA
CCTTCGTCAAACCGCTGACCGCACGCCTACTGGAAAGAAAACTTTGGCTG
GACGAGACGAGGGTGCCCAGGATGGTGGTGGCGAGGTTCGGAAGCAAAGG
GGCCATGCTCAAGGCGGTGACCGTGTGGATTCGACGAAGGGGGAGATACA
CGCGGTGGAGAAGGAGAGGAAATCCGTTGACGCTGGAGTGCAATACGTCC
GTCCTCCTGAAGCCAGTGAGGGCTGGGCCAAGGGACAGGCTGGAGGAAGT
TGCGGGTGTAGTGTGATGTAACAGAGGCACGGCAACATGACCTGCAATAT
TTTATGTGCTAGCTGGTCATTGGTTAGTTTTGATACATGTATGGGTGCCT
TCGTGCTGTGCCGGGTTTGGTGCTTGACAAATGAACAGCAACATTCGATC
AAGGCCAGTCGGTTCATGCAGAAGCTACATTTTTGTTCTTGTCTCTCTTC
GGGTTTGACCAGCGCCATTATCCCCTGACAAAGGGCACAACAATGCCCTC
CACGACGCTGCCCGAAAAACTCCAACATGGTGTTGCTGGTAAACTGTGCG
AAGAGAGAGAGCGCAAAGCACGCGGTAGGGAGAGTGACACCCCGATAGGA
AATGGCCCTGTTATTTTGTTGTATCTGGCATGGCTTCTCAATTTTTAACA
TATGACAGCGTTCACGTGCTACACGAGGCGATCCTACTTTTTCACTGGTT
CAGGGCGGACGCAAATGTCAGGGTGAATTCGCGCGACATCTCACCCGTGA
GTAAAAATGCACGGTTGACAATCCTGAACACATATTGGCAGATGATCCAC
CATCTTCGGCTAATCCGTAGGAACACTTGTGCCGATGGCCTATCTCCTTC
GGCTCACCCCCGCAAGCAAACAGAATAAACGGATGCGTATCGTATCGCCT
GAGAATGCTGCAGTGTCTGAGGCAGCTCAACCCGAACAATCATGTGCAGA
TAATCCGCCATCGCAGGCGATGCATCGCCGAAAGCAACACTTCTTTTCGT
TGTGCGCGGGTCGTGTAAGCCATGTAGCTCACGAAGGAGCTACGCGAAGG
AGAAACAC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1223:13109..15066+

>mRNA_H-canaliculatus_F_contig1223.1915.1 ID=mRNA_H-canaliculatus_F_contig1223.1915.1|Name=mRNA_H-canaliculatus_F_contig1223.1915.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2256bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1223:13109..15066+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGACGAGTCAAGAGCGACCACTCAGGATGGTGACCGAGCGGCATCGAG
TACCGGTGAGGGCGCCGGGAAATGGTGCAGCGACACCCCGGAAACGGCTG
AAAGGCTGACAGAGCCATCCGCCGTGACGGCGGCGGGCGGTTCCAAGCAA
TTTCCGTCAGTGAGAAGCGTTGGGGTTGGAACAGGCAGCCCGACTGCTAA
AGAGAAAAGCGACGCCGAGGAACCAAAGGGCGTTGGGGTAGGAACCAGCC
CTGGCACTAGCCCAAGGATGACTATCAAGATGAATGCTTTCGGAGGTCGA
CAGACTGGTCCGGGGATATCGAGCCCAAAGAGTCGAGGGGTCGCCGAAAA
TTCAAGCCAACCTTGTCCCGGCGCCAGCCCCAAGGCCTCGAGTCCACCAG
CGCATTCCAGCGCTACGAAGAGAGGTCGCGACACAGGCGAGAGCAGATCC
GGTAGAAGCCCACTGATAGCCGGAGCGACGGAAGATGGTGTATTTGGCGA
AGACGAAGCAAATGTAGATGCTCTTCCTGCGAGCCACAGCCTTGGATCGA
CGCAGGTGGTCTCTCCTGCTTTGGAGACTGTTTGCGATGCGACCAGCAAG
GGCGTGGGGGCGGCTTGCGATGACCTTGAACAAACACTCGTGGCCTTCCA
CGCTTGCGACGGCGAGGTGAGAGGCCGCGGGGAGTCTGTAAGCGACGTGC
GCGACGCTGTGGATCGGCGTGCGGGGGATCGATCTGATATGAGGTGTGGA
AATGCTCTCGATGGTGGCGTACCACAGACTGGTATTGACGACGCTTCAAA
GCGTGACGTGGGCCACCAACCCAGAAAAAATAAGAAAAACCGGGTGGCTC
CGATAGACCTTCGTCAAACCGCTGACCGCACGCCTACTGGAAAGAAAACT
TTGGCTGGACGAGACGAGGGTGCCCAGGATGGTGGTGGCGAGGTTCGGAA
GCAAAGGGGCCATGCTCAAGGCGGTGACCGTGTGGATTCGACGAAGGGGG
AGATACACGCGGTGGAGAAGGAGAGGAAATCCGTTGACGCTGGAGTGCAA
TACGTCCGTCCTCCTGAAGCCAGTGAGGGCTGGGCCAAGGGACAGGCTGG
AGGAAGTTGCGGGTGTAGTGTGATGTAAATGGACGAGTCAAGAGCGACCA
CTCAGGATGGTGACCGAGCGGCATCGAGTACCGGTGAGGGCGCCGGGAAA
TGGTGCAGCGACACCCCGGAAACGGCTGAAAGGCTGACAGAGCCATCCGC
CGTGACGGCGGCGGGCGGTTCCAAGCAATTTCCGTCAGTGAGAAGCGTTG
GGGTTGGAACAGGCAGCCCGACTGCTAAAGAGAAAAGCGACGCCGAGGAA
CCAAAGGGCGTTGGGGTAGGAACCAGCCCTGGCACTAGCCCAAGGATGAC
TATCAAGATGAATGCTTTCGGAGGTCGACAGACTGGTCCGGGGATATCGA
GCCCAAAGAGTCGAGGGGTCGCCGAAAATTCAAGCCAACCTTGTCCCGGC
GCCAGCCCCAAGGCCTCGAGTCCACCAGCGCATTCCAGCGCTACGAAGAG
AGGTCGCGACACAGGCGAGAGCAGATCCGGTAGAAGCCCACTGATAGCCG
GAGCGACGGAAGATGGTGTATTTGGCGAAGACGAAGCAAATGTAGATGCT
CTTCCTGCGAGCCACAGCCTTGGATCGACGCAGGTGGTCTCTCCTGCTTT
GGAGACTGTTTGCGATGCGACCAGCAAGGGCGTGGGGGCGGCTTGCGATG
ACCTTGAACAAACACTCGTGGCCTTCCACGCTTGCGACGGCGAGGTGAGA
GGCCGCGGGGAGTCTGTAAGCGACGTGCGCGACGCTGTGGATCGGCGTGC
GGGGGATCGATCTGATATGAGGTGTGGAAATGCTCTCGATGGTGGCGTAC
CACAGACTGGTATTGACGACGCTTCAAAGCGTGACGTGGGCCACCAACCC
AGAAAAAATAAGAAAAACCGGGTGGCTCCGATAGACCTTCGTCAAACCGC
TGACCGCACGCCTACTGGAAAGAAAACTTTGGCTGGACGAGACGAGGGTG
CCCAGGATGGTGGTGGCGAGGTTCGGAAGCAAAGGGGCCATGCTCAAGGC
GGTGACCGTGTGGATTCGACGAAGGGGGAGATACACGCGGTGGAGAAGGA
GAGGAAATCCGTTGACGCTGGAGTGCAATACGTCCGTCCTCCTGAAGCCA
GTGAGGGCTGGGCCAAGGGACAGGCTGGAGGAAGTTGCGGGTGTAGTGTG
ATGTAA
back to top