mRNA_H-canaliculatus_F_contig12221.1912.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12221.1912.1
Unique NamemRNA_H-canaliculatus_F_contig12221.1912.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12221.1912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12221contigH-canaliculatus_F_contig12221:1833..3497 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size410
Cds size252
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12221.1912.1prot_H-canaliculatus_F_contig12221.1912.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12221 2844..3455 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928936.8222516-UTR-H-canaliculatus_F_contig12221:1832..19191622928936.8222516-UTR-H-canaliculatus_F_contig12221:1832..1919Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12221 1833..1919 -
1696845619.8327925-UTR-H-canaliculatus_F_contig12221:1832..19191696845619.8327925-UTR-H-canaliculatus_F_contig12221:1832..1919Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12221 1833..1919 -
1622928936.842633-UTR-H-canaliculatus_F_contig12221:2814..28431622928936.842633-UTR-H-canaliculatus_F_contig12221:2814..2843Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12221 2815..2843 -
1696845619.8458672-UTR-H-canaliculatus_F_contig12221:2814..28431696845619.8458672-UTR-H-canaliculatus_F_contig12221:2814..2843Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12221 2815..2843 -
1622928936.9131005-UTR-H-canaliculatus_F_contig12221:3455..34971622928936.9131005-UTR-H-canaliculatus_F_contig12221:3455..3497Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12221 3456..3497 -
1696845619.9041014-UTR-H-canaliculatus_F_contig12221:3455..34971696845619.9041014-UTR-H-canaliculatus_F_contig12221:3455..3497Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12221 3456..3497 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928936.862835-CDS-H-canaliculatus_F_contig12221:2843..29531622928936.862835-CDS-H-canaliculatus_F_contig12221:2843..2953Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12221 2844..2953 -
1696845619.8573592-CDS-H-canaliculatus_F_contig12221:2843..29531696845619.8573592-CDS-H-canaliculatus_F_contig12221:2843..2953Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12221 2844..2953 -
1622928936.8772082-CDS-H-canaliculatus_F_contig12221:3247..33371622928936.8772082-CDS-H-canaliculatus_F_contig12221:3247..3337Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12221 3248..3337 -
1696845619.875619-CDS-H-canaliculatus_F_contig12221:3247..33371696845619.875619-CDS-H-canaliculatus_F_contig12221:3247..3337Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12221 3248..3337 -
1622928936.8914173-CDS-H-canaliculatus_F_contig12221:3403..34551622928936.8914173-CDS-H-canaliculatus_F_contig12221:3403..3455Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12221 3404..3455 -
1696845619.8907638-CDS-H-canaliculatus_F_contig12221:3403..34551696845619.8907638-CDS-H-canaliculatus_F_contig12221:3403..3455Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12221 3404..3455 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12221.1912.1

>prot_H-canaliculatus_F_contig12221.1912.1 ID=prot_H-canaliculatus_F_contig12221.1912.1|Name=mRNA_H-canaliculatus_F_contig12221.1912.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=84bp
MPIGNICVLLCAQQVCRLFFSTNDILGLYRPSMCCTPQTGSKIMQSSEPL
PQCCSGLQQRPGQAAGTRPATERQHSLLRGDGV*
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mRNA from alignment at H-canaliculatus_F_contig12221:1833..3497-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12221.1912.1 ID=mRNA_H-canaliculatus_F_contig12221.1912.1|Name=mRNA_H-canaliculatus_F_contig12221.1912.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1665bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12221:1833..3497- (Hapterophycus canaliculatus Oshoro5f female)
AGGCCTACTGCTGCGACAGTCTGTCCGAATCCACTTCCCAGGATGCCAAT
AGGAAATATATGTGTACTGCTGTGTGCTCAACAGGTTTGTAGACGCTGAA
AAAAACTACGGTGACGTCCCCTCTCATGAAGGATGGTCATGAGAGGGGAC
GTCACCGTAGTTTTTTTCAGCACCAACGATATATTGGGATTATATCGTCC
ATCTATGTGCTGTACCCCTCAGACTGGATCCAAGATAATGCAATCGTCAG
GTGATGAGAGGAATGATTACCGCGATCTCATCGTTCGGTTACAGTATTCG
CGCGAGATTTTGTGGAATGTTCACGGCGAAAAAATGGGTTGGGCTTGTGA
GTCGTGGGACTATCGATGAAGGTGTGTAAGTAGAGGCAGTGGAAGCGTAA
GCCCAAACGTGCTCTTCCTACCGCTCACGTAGTGAAAGGCGAGACCGTCT
TAGCGCGGAGTTTTAACCTGTCACATGTGAGTAAATACGCCATGTTCGTT
ACATTCATGTTTACCGACGTGTGTATCTGTCTCTTTGTTGTCAGAACCCC
TCCCTCAGTGCTGTTCGGGCCTGCAACAGCGCCCAGGCCAAGCTGCTGGA
ACGAGGCCTGCCACCGAACGGCAACATAGCTTGCTACGCGGAGATGGCGT
TTAAGGTCAACGACTTGGCTGACATCTTCAACGGTAAGTGCCTCTTTGTC
CATCTCGCCTCGAAGATTGACAGTAGTGCGGTAGGCAGGATGATGGCTTT
CAGTCTAAGCAAGATCGACATCGGCGATCGGAGAATTTACGGATGGCCTT
CACATTTGTTGTCCACAGACATGGCGGTACCCTCTAGAATAAGGTCGTCT
CACACGAAAGATCGGCAGGAGTGGCCGAGTTCTGTACGGCAGTAACACGG
CACAGCGACTCGAAACGTTTGACACGGGAATGTTACTTCCAGGTGTGTAT
GGCCGCAACAAGGTCGACGTCAAAAAGAAGATTGACATCAGGAAAAGCTG
CATCACCGCAGGAAACAACCCCCTTCTCGACCGGCTACTGGAGATTCTGG
GGTGGTTCGAAACTTGGAGGCGTGGGTCGGAGCCTTCCTTCCCAGGCGCC
ACGGACATCCAGGCATTCATCACGCGCGAATCTTGGTTCGACATGCAACT
AGCTATTCGGGGGTTTGTTGCCCTGAGCCGCTACCTGTTCAATGACGAGT
CTCTGGTTGATGAGGGCGGGCGGCGTCGCTATCTCTTCCCGAGAGATTTT
AGTCAGGCGGGAATTAATTTATTGGACGATGCTGTGATCCATGAATTCTT
GCTGGTCGCATGCGGTGGAATTCAAAGTAAAAATTACGAGGGATTGCGAC
AGCTGTTACGAAAGCCTTTTTTGTAATTAAAATAACAGACATCAACGATT
TACGTCTCAAGTGGCTAAACAACAGGTACTACCCACGGAACTGTGTGAAC
TCCTTGATACATGTGACGTATCCGCTGCAGCGCCACAAGCAGGACATCGT
CCTGCGTTCTTGTACTATCTTGTGCTAATTTTGGCCCACACAATGGTTTG
TTCTGTCTGTGGCGTTCATGTTCGGCAGGACATCTGCGAGCACAGGTTTG
GGCACATCCGTGCAGGCCAGGGGACTTACAAAAAACCCAGAAAGGAGCAC
GCGTTCGGCGCAAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12221:1833..3497-

>mRNA_H-canaliculatus_F_contig12221.1912.1 ID=mRNA_H-canaliculatus_F_contig12221.1912.1|Name=mRNA_H-canaliculatus_F_contig12221.1912.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=504bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12221:1833..3497- (Hapterophycus canaliculatus Oshoro5f female)
ATGCCAATAGGAAATATATGTGTACTGCTGTGTGCTCAACAGGTTTGTAG
ACATGCCAATAGGAAATATATGTGTACTGCTGTGTGCTCAACAGGTTTGT
AGACTTTTTTTCAGCACCAACGATATATTGGGATTATATCGTCCATCTAT
GTGCTGTACCCCTCAGACTGGATCCAAGATAATGCAATCGTCAGTTTTTT
TCAGCACCAACGATATATTGGGATTATATCGTCCATCTATGTGCTGTACC
CCTCAGACTGGATCCAAGATAATGCAATCGTCAGAACCCCTCCCTCAGTG
CTGTTCGGGCCTGCAACAGCGCCCAGGCCAAGCTGCTGGAACGAGGCCTG
CCACCGAACGGCAACATAGCTTGCTACGCGGAGATGGCGTTTAAAACCCC
TCCCTCAGTGCTGTTCGGGCCTGCAACAGCGCCCAGGCCAAGCTGCTGGA
ACGAGGCCTGCCACCGAACGGCAACATAGCTTGCTACGCGGAGATGGCGT
TTAA
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