mRNA_H-canaliculatus_F_contig12221.1911.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12221.1911.1
Unique NamemRNA_H-canaliculatus_F_contig12221.1911.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12221.1911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12221contigH-canaliculatus_F_contig12221:1724..2422 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size699
Cds size360
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928937.064259-CDS-H-canaliculatus_F_contig12221:1723..20831622928937.064259-CDS-H-canaliculatus_F_contig12221:1723..2083Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12221 1724..2083 +
1696845619.9201403-CDS-H-canaliculatus_F_contig12221:1723..20831696845619.9201403-CDS-H-canaliculatus_F_contig12221:1723..2083Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12221 1724..2083 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928937.078243-UTR-H-canaliculatus_F_contig12221:2083..24221622928937.078243-UTR-H-canaliculatus_F_contig12221:2083..2422Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12221 2084..2422 +
1696845619.936672-UTR-H-canaliculatus_F_contig12221:2083..24221696845619.936672-UTR-H-canaliculatus_F_contig12221:2083..2422Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12221 2084..2422 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12221.1911.1prot_H-canaliculatus_F_contig12221.1911.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12221 1724..2083 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12221.1911.1

>prot_H-canaliculatus_F_contig12221.1911.1 ID=prot_H-canaliculatus_F_contig12221.1911.1|Name=mRNA_H-canaliculatus_F_contig12221.1911.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=120bp
MVARAAVSLRSKRCGASPRIHERRCDCCAALARSDRPLRRTRAPFWVFCK
SPGLHGCAQTCARRCPAEHERHRQNKPLCGPKLAQDSTRTQDDVLLVALQ
RIRHMYQGVHTVPWVVPVV*
back to top

mRNA from alignment at H-canaliculatus_F_contig12221:1724..2422+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12221.1911.1 ID=mRNA_H-canaliculatus_F_contig12221.1911.1|Name=mRNA_H-canaliculatus_F_contig12221.1911.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=699bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12221:1724..2422+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTAGCGCGAGCTGCCGTGTCGCTTAGGTCTAAGCGGTGCGGCGCGTC
GCCACGAATACATGAACGGCGATGTGACTGCTGTGCAGCCCTCGCAAGAT
CCGATCGGCCCTTGCGCCGAACGCGTGCTCCTTTCTGGGTTTTTTGTAAG
TCCCCTGGCCTGCACGGATGTGCCCAAACCTGTGCTCGCAGATGTCCTGC
CGAACATGAACGCCACAGACAGAACAAACCATTGTGTGGGCCAAAATTAG
CACAAGATAGTACAAGAACGCAGGACGATGTCCTGCTTGTGGCGCTGCAG
CGGATACGTCACATGTATCAAGGAGTTCACACAGTTCCGTGGGTAGTACC
TGTTGTTTAGCCACTTGAGACGTAAATCGTTGATGTCTGTTATTTTAATT
ACAAAAAAGGCTTTCGTAACAGCTGTCGCAATCCCTCGTAATTTTTACTT
TGAATTCCACCGCATGCGACCAGCAAGAATTCATGGATCACAGCATCGTC
CAATAAATTAATTCCCGCCTGACTAAAATCTCTCGGGAAGAGATAGCGAC
GCCGCCCGCCCTCATCAACCAGAGACTCGTCATTGAACAGGTAGCGGCTC
AGGGCAACAAACCCCCGAATAGCTAGTTGCATGTCGAACCAAGATTCGCG
CGTGATGAATGCCTGGATGTCCGTGGCGCCTGGGAAGGAAGGCTCCGAC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12221:1724..2422+

>mRNA_H-canaliculatus_F_contig12221.1911.1 ID=mRNA_H-canaliculatus_F_contig12221.1911.1|Name=mRNA_H-canaliculatus_F_contig12221.1911.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=720bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12221:1724..2422+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTAGCGCGAGCTGCCGTGTCGCTTAGGTCTAAGCGGTGCGGCGCGTC
GCCACGAATACATGAACGGCGATGTGACTGCTGTGCAGCCCTCGCAAGAT
CCGATCGGCCCTTGCGCCGAACGCGTGCTCCTTTCTGGGTTTTTTGTAAG
TCCCCTGGCCTGCACGGATGTGCCCAAACCTGTGCTCGCAGATGTCCTGC
CGAACATGAACGCCACAGACAGAACAAACCATTGTGTGGGCCAAAATTAG
CACAAGATAGTACAAGAACGCAGGACGATGTCCTGCTTGTGGCGCTGCAG
CGGATACGTCACATGTATCAAGGAGTTCACACAGTTCCGTGGGTAGTACC
TGTTGTTTAGATGGTAGCGCGAGCTGCCGTGTCGCTTAGGTCTAAGCGGT
GCGGCGCGTCGCCACGAATACATGAACGGCGATGTGACTGCTGTGCAGCC
CTCGCAAGATCCGATCGGCCCTTGCGCCGAACGCGTGCTCCTTTCTGGGT
TTTTTGTAAGTCCCCTGGCCTGCACGGATGTGCCCAAACCTGTGCTCGCA
GATGTCCTGCCGAACATGAACGCCACAGACAGAACAAACCATTGTGTGGG
CCAAAATTAGCACAAGATAGTACAAGAACGCAGGACGATGTCCTGCTTGT
GGCGCTGCAGCGGATACGTCACATGTATCAAGGAGTTCACACAGTTCCGT
GGGTAGTACCTGTTGTTTAG
back to top