mRNA_H-canaliculatus_F_contig1222.1908.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1222.1908.1
Unique NamemRNA_H-canaliculatus_F_contig1222.1908.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1222.1908.1 vs. uniprot
Match: D7FXK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXK8_ECTSI)

HSP 1 Score: 362 bits (929), Expect = 8.080e-111
Identity = 165/192 (85.94%), Postives = 176/192 (91.67%), Query Frame = 1 
Query: 2611 GGREITWSNRRGEDLVQVSGDVWCAERPFVWNGIDVGGRMAVVKLSDGSLWVHSPVDLDAPLREALAELGPVGHIVSPNYEHVKYAKQWVEAYPSARSYACPGLAEREPDVGFTREVGASPDDESPPEWKGEIQACLMDCETNPFTGKPFFNEVVFFHRPTKTFMASDLYWNYPRKDIPFGTKVWKWGMDKV 3186
            G RE+TWSN  G+D+VQV GDVWCAERPFVWNGIDVGGRMAVVKLSDGSLWVHSPVDLD PL+EALA LGPVGHIVSPNYEHVKYAKQWVEAYPSA SYACPGLAER+P+VGFTREVGAS +DES PEW  EI AC MDCETNPFTGKPFFNEVVFFHRPTKT + SDLYWNYPRK++P GT+VWKWGMDKV
Sbjct:   13 GRREMTWSNPMGDDMVQVLGDVWCAERPFVWNGIDVGGRMAVVKLSDGSLWVHSPVDLDEPLKEALASLGPVGHIVSPNYEHVKYAKQWVEAYPSAVSYACPGLAERQPEVGFTREVGASIEDESLPEWGDEILACFMDCETNPFTGKPFFNEVVFFHRPTKTLITSDLYWNYPRKEVPLGTRVWKWGMDKV 204
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BLAST of mRNA_H-canaliculatus_F_contig1222.1908.1 vs. uniprot
Match: A0A8J9RQ74_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RQ74_9CHLO)

HSP 1 Score: 254 bits (648), Expect = 1.390e-72
Identity = 118/187 (63.10%), Postives = 142/187 (75.94%), Query Frame = 1 
Query: 2626 TWSNRRGEDLVQVSGDVWCAERPFVWNGIDVGGRMAVVKLSDGSLWVHSPVDLDAPLREALAELGPVGHIVSPNYEHVKYAKQWVEAYPSARSYACPGLAEREPDVGFTREVGASPDDESPPEWKGEIQACLMDCETNPFTGKPFFNEVVFFHRPTKTFMASDLYWNYPRKDIPFGTKVWKWGMDKV 3186
            T++N  G+ L Q++ +VW A+RPF+WN IDVGGRMAV+KLSDGS+WVHSPV LD  L  AL ELG V HIVSPNYEH KYAKQW+E YP ARSYACPGL E+EP V +T E+G    +  PPEW GE+Q   +  E NPF GKPFFNEVVFF +P K  + SDL+WNYP +  P GTK+WK+GMD+V
Sbjct:   36 TFTNTSGKVLQQLAPNVWAADRPFIWNRIDVGGRMAVLKLSDGSIWVHSPVQLDDDLAAALGELGEVKHIVSPNYEHTKYAKQWIERYPGARSYACPGLKEKEPQVPYTTELGGGGGE--PPEWLGEVQTTCLTYERNPFNGKPFFNEVVFFFKPEKLLITSDLFWNYPNQ-APGGTKLWKFGMDRV 219
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BLAST of mRNA_H-canaliculatus_F_contig1222.1908.1 vs. uniprot
Match: A0A6U5BPS5_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U5BPS5_HEMAN)

HSP 1 Score: 248 bits (633), Expect = 1.050e-69
Identity = 111/190 (58.42%), Postives = 144/190 (75.79%), Query Frame = 1 
Query: 2626 TWSNRRGEDLVQVSGDVWCAERPFVWNGIDVGGRMAVVKLSDGSLWVHSPVDLDAPLREALAELG-PVGHIVSPNYEHVKYAKQWVEAYPSARSYACPGLAEREPDVGFTREVGASPDDESPPEWKGEIQACLMDCETNPFTGKPFFNEVVFFHRPTKTFMASDLYWNYPRKDIPFGTKVWKWGMDKVMG 3192
            TWSNR G  L Q   ++W AERPF+WN IDVG +M +VKLSDGSLWVHSPV+LDA +R A++++G  V +IVSPNYEH+K+AKQW EA+P+A +  CPG+ E+ PDVG+  EV AS D   P  W  EI+A   DCE NPFTGKPFFNEV F H  ++T + +D +WNYP++++PFGT+ WK+GMD+V G
Sbjct:   77 TWSNRGGLVLTQHRSNIWAAERPFLWNNIDVGCKMTLVKLSDGSLWVHSPVELDADMRSAISDIGGEVKYIVSPNYEHMKFAKQWFEAFPNAAACGCPGIKEKYPDVGYQTEVPAS-DGSMPQGWPAEIEAIFFDCEKNPFTGKPFFNEVNFVHTASRTLITTDTFWNYPKREVPFGTRAWKFGMDQVYG 265
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BLAST of mRNA_H-canaliculatus_F_contig1222.1908.1 vs. uniprot
Match: A0A7S0Y1A6_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0Y1A6_HEMAN)

HSP 1 Score: 244 bits (624), Expect = 5.290e-69
Identity = 109/187 (58.29%), Postives = 142/187 (75.94%), Query Frame = 1 
Query: 2626 TWSNRRGEDLVQVSGDVWCAERPFVWNGIDVGGRMAVVKLSDGSLWVHSPVDLDAPLREALAELG-PVGHIVSPNYEHVKYAKQWVEAYPSARSYACPGLAEREPDVGFTREVGASPDDESPPEWKGEIQACLMDCETNPFTGKPFFNEVVFFHRPTKTFMASDLYWNYPRKDIPFGTKVWKWGMDK 3183
            TWSNR G  L Q   ++W AERPF+WN IDVG +M +VKLSDGSLWVHSPV+LDA +R A++++G  V +IVSPNYEH+K+AKQW EA+P+A +  CPG+ E+ PDVG+  EV AS D   P  W  EI+A   DCE NPFTGKPFFNEV F H  ++T + +D +WNYP++++PFGT+ WK+GMD+
Sbjct:   97 TWSNRGGLVLTQHRSNIWAAERPFLWNNIDVGCKMTLVKLSDGSLWVHSPVELDADMRSAISDIGGEVKYIVSPNYEHMKFAKQWFEAFPNAAACGCPGIKEKYPDVGYQTEVPAS-DGSMPQGWPAEIEAIFFDCEKNPFTGKPFFNEVNFVHTASRTLITTDTFWNYPKREVPFGTRAWKFGMDQ 282
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BLAST of mRNA_H-canaliculatus_F_contig1222.1908.1 vs. uniprot
Match: A0A1Y1IMY2_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IMY2_KLENI)

HSP 1 Score: 245 bits (625), Expect = 9.920e-69
Identity = 111/188 (59.04%), Postives = 137/188 (72.87%), Query Frame = 1 
Query: 2626 TWSNRRGEDLVQV-SGDVWCAERPFVWNGIDVGGRMAVVKLSDGSLWVHSPVDLDAPLREALAELGPVGHIVSPNYEHVKYAKQWVEAYPSARSYACPGLAEREPDVGFTREVGASPDDESPPEWKGEIQACLMDCETNPFTGKPFFNEVVFFHRPTKTFMASDLYWNYPRKDIPFGTKVWKWGMDKV 3186
            TWSN  G  L +V  G VW AERPF+WNGIDVGG+M VV+L DGS+WVHSPV LD  L+ A+ +LGPV HIV+PNYEH  +A+QW+EAYP A++YACPGL  ++PDV +  E+GA+    +P EW GE      DCE NPFT KPFFNEVV+ H P+     +DL+WNYP K +P GT +WK GMDKV
Sbjct:   92 TWSNPSGNVLTEVVPGQVWAAERPFMWNGIDVGGKMGVVRLRDGSVWVHSPVPLDNQLKAAMDQLGPVKHIVTPNYEHAGFAQQWIEAYPDAKAYACPGLRAKKPDVRYAAEIGAN-GSATPAEWGGEFSFAFFDCEHNPFTLKPFFNEVVYVHHPSGVLFVTDLFWNYPGKAVPPGTFIWKQGMDKV 278
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BLAST of mRNA_H-canaliculatus_F_contig1222.1908.1 vs. uniprot
Match: A0A835ZG26_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG26_9STRA)

HSP 1 Score: 239 bits (611), Expect = 9.880e-68
Identity = 107/193 (55.44%), Postives = 142/193 (73.58%), Query Frame = 1 
Query: 2608 RGGREITWSNRRGEDLVQVSGDVWCAERPFVWNGIDVGGRMAVVKLSDGSLWVHSPVDLDAPLREALAELGPVGHIVSPNYEHVKYAKQWVEAYPSARSYACPGLAEREPDVGFTREVGASPDDESPPEWKGEIQACLMDCETNPFTGKPFFNEVVFFHRPTKTFMASDLYWNYPRKDIPFGTKVWKWGMDKV 3186
            R  R+ TWSN +G DL  +  +VW AERPF+WN IDVGGRM V+KL DGSLWVHSPV+LD  L++ LAELGPV H+VSPNYEHVKYA+QW+ AYP A ++ACPGL +++PD+G+ R +G + D  +P +W  EI    ++CE  P   + FF+EVVF H P++  + +D+YWNYPR   P  T++WK+GMD V
Sbjct:   17 RNARDKTWSNPKGLDLTPIKHNVWGAERPFIWNTIDVGGRMTVIKLEDGSLWVHSPVELDPALQQTLAELGPVRHVVSPNYEHVKYAQQWIHAYPDATAWACPGLKDKKPDIGYDRTIGTTAD--APADWPREIGFVWLNCERVPVLNQAFFSEVVFHHEPSQCLLCTDVYWNYPRSAPP-KTQLWKFGMDVV 206
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BLAST of mRNA_H-canaliculatus_F_contig1222.1908.1 vs. uniprot
Match: A0A7S4C8N9_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4C8N9_9EUGL)

HSP 1 Score: 250 bits (639), Expect = 2.430e-67
Identity = 114/186 (61.29%), Postives = 139/186 (74.73%), Query Frame = 1 
Query: 2629 WSNRRGEDLVQVSGDVWCAERPFVWNGIDVGGRMAVVKLSDGSLWVHSPVDLDAPLREALAELGPVGHIVSPNYEHVKYAKQWVEAYPSARSYACPGLAEREPDVGFTREVGASPDDESPPEWKGEIQACLMDCETNPFTGKPFFNEVVFFHRPTKTFMASDLYWNYPRKDIPFGTKVWKWGMDKV 3186
            WSN   E L +V+ D+W AERPF+WN IDVGG+MAVV+L+DGSLWVHSPV+LDAPL+ ALA LGPV +I+SPNYEHVKYA+QW++AYP A +Y CPG  E+ P + F  EVG    +  P  W  ++    MDCE NPFT  PFFNEVVF H PTKT + +DL+WNYP  D P GT+ WKWGMD+V
Sbjct:  176 WSNPGKEVLKKVAPDLWVAERPFIWNSIDVGGKMAVVRLADGSLWVHSPVELDAPLKAALAALGPVKYIMSPNYEHVKYAQQWIDAYPDAIAYGCPGAKEKFPQISFQAEVGVG--NAVPEAWASDLLVTYMDCEHNPFTRSPFFNEVVFVHLPTKTLIVTDLFWNYPI-DAPAGTRAWKWGMDEV 358
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BLAST of mRNA_H-canaliculatus_F_contig1222.1908.1 vs. uniprot
Match: A0A0G4F7M5_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4F7M5_9ALVE)

HSP 1 Score: 234 bits (597), Expect = 6.020e-65
Identity = 116/243 (47.74%), Postives = 156/243 (64.20%), Query Frame = 1 
Query: 2482 PRTGQRPPTSGKDKRPLPRSCLPEAAPVMSQGQSRSAAAAGVRGGR----EITWSNRRGEDLVQVSGDVWCAERPFVWNGIDVGGRMAVVKLSDGSLWVHSPVDLDAPLREALAELGPVGHIVSPNYEHVKYAKQWVEAYPSARSYACPGLAEREPDVGFTREVGASPD--DESPPEWKGEIQACLMDCETNPFTGKPFFNEVVFFHRPTKTFMASDLYWNYPRKD--IPFGTKVWKWGMDKV 3186
            P+  +RP  S   + P PR  L   A      + ++    GV        + TWSN++GE L +V+  +W A+RPF+WN IDVGG+MAVV+L DG+LWVHSPV  D  L EAL + G + H+VSPN+EHVK+A  W   +PS+ +  CPGLAEREP VGF + V    +  + +P EW GE + C +D E NPFT +PFFNEV+FFH+P+KT + SD  WNYP +   +P  T+VWK GMDK+
Sbjct:   32 PKFFRRPRPSPPSRSPSPRGSLTATAEDTRSAREKAPDEPGVSSESAEPLQKTWSNQKGEVLCRVTDSIWYADRPFIWNKIDVGGKMAVVRLRDGTLWVHSPVAFDRTLAEALGKAGRIKHLVSPNFEHVKFAGDWKREFPSSVASGCPGLAEREPGVGFDQTVPVVGEGGEGAPSEWLGEFEVCFLDFEHNPFTRRPFFNEVIFFHKPSKTLIVSDALWNYPGQPERVPLLTRVWKLGMDKL 274
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BLAST of mRNA_H-canaliculatus_F_contig1222.1908.1 vs. uniprot
Match: A0A5J4YDZ7_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YDZ7_9CHLO)

HSP 1 Score: 231 bits (589), Expect = 1.360e-63
Identity = 107/187 (57.22%), Postives = 136/187 (72.73%), Query Frame = 1 
Query: 2626 TWSNRRGEDLVQVSGDVWCAERPFVWNGIDVGGRMAVVKLSDGSLWVHSPVDLDAPLREALAELGPVGHIVSPNYEHVKYAKQWVEAYPSARSYACPGLAEREPDVGFTREVGASPDDESPPEWKGEIQACLMDCETNPFTGKPFFNEVVFFHRPTKTFMASDLYWNYPRKDIPFGTKVWKWGMDKV 3186
            T++N+ G  L Q S  VW AERPF W GIDV GR AVVKLSDGSLWVHSPV LD  L+ A+  LGPV HIV+PN+EH K+A+QW++AYPSA+SY CPG  ++ PD+ +++EVG    D++PPEW GEI+   +  E  P    PFFNEVVF H+P+ T +A+DL WNYP    P GT+ WK+GMD+V
Sbjct:   98 TFTNKEGRVLTQHSDHVWGAERPFAWLGIDVNGRGAVVKLSDGSLWVHSPVKLDPELKAAMDALGPVKHIVTPNFEHNKFAQQWIDAYPSAKSYVCPGGLKKYPDIKYSQEVGEG--DKAPPEWLGEIEPTFLSYEAVPLLNFPFFNEVVFVHKPSGTLIATDLIWNYPGSGTPKGTQAWKFGMDRV 282
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BLAST of mRNA_H-canaliculatus_F_contig1222.1908.1 vs. uniprot
Match: C1MGP7_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MGP7_MICPC)

HSP 1 Score: 227 bits (579), Expect = 3.860e-63
Identity = 109/203 (53.69%), Postives = 136/203 (67.00%), Query Frame = 1 
Query: 2620 EITWSNRRGEDLVQV-SGDVWCAERPFVWNGIDVGGRMAVVKLSDGSLWVHSPVDLDAPLREALAELGPVGHIVSPNYEHVKYAKQWVEAYPSARSYACPGLAEREPDVGFTREVGASPDDESPPEWKGEIQACLMDCETNPFTGKPFFNEVVFFHRPTKTFMASDLYWNYPR-KDIPFGTKVWKWGMDKVMGGCEFFKAGVL 3222
            E TWSN  G  L  V  G VW AERPF WN IDVGG+MAVV+L DG+LWVHSP+DLD   R A+  LG V H+VSPNYEHVK+A QW EAYP A  Y CPG+  ++P + +  EVG   +D +P  W GE    L DCE NPFT  PFFNEVVF H  +     +D++WNYP   D+P GT++WK+GMD+V     F++A ++
Sbjct:   48 EKTWSNPTGNVLTDVVPGVVWAAERPFTWNAIDVGGKMAVVRLRDGALWVHSPIDLDDATRAAIDALGSVKHVVSPNYEHVKWAAQWKEAYPDATLYGCPGMRAKKPGIPWDAEVG---EDGAPEAWGGEFDVALFDCEVNPFTSTPFFNEVVFCHAASGVAFVTDVFWNYPGGDDVPPGTRLWKFGMDRVY--LPFYRAAMV 245
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1222.1908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXK8_ECTSI8.080e-11185.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8J9RQ74_9CHLO1.390e-7263.10Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi ... [more]
A0A6U5BPS5_HEMAN1.050e-6958.42Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S0Y1A6_HEMAN5.290e-6958.29Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A1Y1IMY2_KLENI9.920e-6959.04Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A835ZG26_9STRA9.880e-6855.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4C8N9_9EUGL2.430e-6761.29Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A0G4F7M5_9ALVE6.020e-6547.74Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A5J4YDZ7_9CHLO1.360e-6357.22Uncharacterized protein (Fragment) n=1 Tax=Treboux... [more]
C1MGP7_MICPC3.860e-6353.69Predicted protein n=2 Tax=Micromonas pusilla TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1222contigH-canaliculatus_F_contig1222:7963..15546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score365.5
Seed ortholog evalue2.1e-98
Seed eggNOG ortholog2880.D7FXK8
EggNOG free text desc.Domain of unknown function (DUF4336)
EggNOG OGs2BIUM@1,2RZ4V@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size5082
Cds size801
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928936.3200822-UTR-H-canaliculatus_F_contig1222:7962..96781622928936.3200822-UTR-H-canaliculatus_F_contig1222:7962..9678Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1222 7963..9678 -
1696845619.60498-UTR-H-canaliculatus_F_contig1222:7962..96781696845619.60498-UTR-H-canaliculatus_F_contig1222:7962..9678Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1222 7963..9678 -
1622928936.429178-UTR-H-canaliculatus_F_contig1222:12981..155461622928936.429178-UTR-H-canaliculatus_F_contig1222:12981..15546Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1222 12982..15546 -
1696845619.6699848-UTR-H-canaliculatus_F_contig1222:12981..155461696845619.6699848-UTR-H-canaliculatus_F_contig1222:12981..15546Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1222 12982..15546 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928936.3352036-CDS-H-canaliculatus_F_contig1222:9678..99751622928936.3352036-CDS-H-canaliculatus_F_contig1222:9678..9975Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1222 9679..9975 -
1696845619.618755-CDS-H-canaliculatus_F_contig1222:9678..99751696845619.618755-CDS-H-canaliculatus_F_contig1222:9678..9975Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1222 9679..9975 -
1622928936.3519735-CDS-H-canaliculatus_F_contig1222:10706..107821622928936.3519735-CDS-H-canaliculatus_F_contig1222:10706..10782Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1222 10707..10782 -
1696845619.62764-CDS-H-canaliculatus_F_contig1222:10706..107821696845619.62764-CDS-H-canaliculatus_F_contig1222:10706..10782Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1222 10707..10782 -
1622928936.3699646-CDS-H-canaliculatus_F_contig1222:10950..110821622928936.3699646-CDS-H-canaliculatus_F_contig1222:10950..11082Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1222 10951..11082 -
1696845619.63814-CDS-H-canaliculatus_F_contig1222:10950..110821696845619.63814-CDS-H-canaliculatus_F_contig1222:10950..11082Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1222 10951..11082 -
1622928936.3874295-CDS-H-canaliculatus_F_contig1222:11926..120681622928936.3874295-CDS-H-canaliculatus_F_contig1222:11926..12068Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1222 11927..12068 -
1696845619.649905-CDS-H-canaliculatus_F_contig1222:11926..120681696845619.649905-CDS-H-canaliculatus_F_contig1222:11926..12068Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1222 11927..12068 -
1622928936.410121-CDS-H-canaliculatus_F_contig1222:12827..129811622928936.410121-CDS-H-canaliculatus_F_contig1222:12827..12981Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1222 12828..12981 -
1696845619.659802-CDS-H-canaliculatus_F_contig1222:12827..129811696845619.659802-CDS-H-canaliculatus_F_contig1222:12827..12981Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1222 12828..12981 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1222.1908.1prot_H-canaliculatus_F_contig1222.1908.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1222 9679..12981 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1222.1908.1

>prot_H-canaliculatus_F_contig1222.1908.1 ID=prot_H-canaliculatus_F_contig1222.1908.1|Name=mRNA_H-canaliculatus_F_contig1222.1908.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=267bp
MSQGQSRSAAAAGVRGGREITWSNRRGEDLVQVSGDVWCAERPFVWNGID
VGGRMAVVKLSDGSLWVHSPVDLDAPLREALAELGPVGHIVSPNYEHVKY
AKQWVEAYPSARSYACPGLAEREPDVGFTREVGASPDDESPPEWKGEIQA
CLMDCETNPFTGKPFFNEVVFFHRPTKTFMASDLYWNYPRKDIPFGTKVW
KWGMDKVMGGCEFFKAGVLLSFQNSSVSISSEERMLVQRTTSQEKQCGRD
TPACTGVRVGDSCFRR*
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mRNA from alignment at H-canaliculatus_F_contig1222:7963..15546-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1222.1908.1 ID=mRNA_H-canaliculatus_F_contig1222.1908.1|Name=mRNA_H-canaliculatus_F_contig1222.1908.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=7584bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1222:7963..15546- (Hapterophycus canaliculatus Oshoro5f female)
CAAGAACTCATTTTTTTATCATGGAGCCTAGGTGTCCCGAAATTCTCCCC
CGGCAGTCCCTCGGTGTCGTCCTTCCTCCCGTGCGCTAAAGGTGAAGACC
GATCCACTAAAAATGGGACGGCACCACACACCCATACACACGTGCGGGAG
AGATATTTCCCGTTGGGGAGGGCAAGAATTCACAAGAAAATAGGCCTGCC
ACCTCCAGTGCGCAGAGCGAGCAGGTAATCGTGAGGAGAGCATCAGCTGT
GTAGACCCTCGGAGACACGCGATGCGAAGTGAACCGCAGATCGCATCTCG
ACACTCAGAGGGCCCTCGTCTTGGTTGCGATCCCCGTGTCTACGTGTTCG
GCAAAGCGGCTACTGCGGTGACTGAAGACACACGCAGCACCGTCGCCTCT
CTCTGTCTCTCTCGCTCCGCCTCGCTCTCTTGATCCCCTGCACCGGGACA
CACATACGCACACACCCCCTTCTGGCCGCTAGCGGAGCACGGACACAAGC
TCCGGAAATCACCATGCGCTGACGCCCGAGTGTTGCGGTGACGGTATACT
CGTGGCGGCGCCGTGTCAAGGATGCTGTAGAGCTTGTGGTCCCTCTCGCC
CTTCCCGGGAGATTGCTCTGCAAGCGTGCGGATGCCGGACTCGAGCGCTG
CCTAGCCCTGCGGGCTTGCGGACGCCAGATCGGGAGGGCACAGATTAAAT
GCTGTCGCCTAGACCAAGCTTGTCGGCCCGCTCGCGGGCGAGATGTTTTG
AGTGGAAGAAGATGGGGCCAAGGTTTCGGCAAGGATGAGGAAGTGCGGGG
GGCTCCGTGGCGCGTGCAATATTCATCTCTTAGTACAAGACACGGATGAC
GCCGTTTGGCCTCGCAAAAGAGGGTCACGCAGAGCCTGTTTTTAGGTGTC
TTTAACTGGTCGCTTCTGCTGCACACGCTTAGCTTTCGCCCCGTGTTCGT
GATCTTGCCCCCTGCATGAATTACGGAGGGATAAGGACATACGCGCCACT
TTCGTTGTATTTGTTTTTGGGAAGGGAGGCTCTTCTTTTCCCACTGCAAA
TAGCTATGGGGGGGCGTTTGGATCTGTGAGCAACAACTCACATGTCCTTT
TCTGCTGTCCAATCTTTCTCTTTCCTTGGGGCCTCAAAAGCGGATATCTT
ACGGGCGTTAACAGCTTGGTCGAGGTGTCGAGCACGGCTGGAGCCGGAAG
CAAGTGTGCCTCGAGCCTGTTAACGTTGGCGCTGTCGTTCCCCAAAGGGG
GCTCGATATTACGTCTTGTTTTTTGTCTCGTCGTGTTGGAACAAAAGAAA
AAGAGGCGTCGTAAAGCCGGCGCTGGCGAAAGGAATGAGTGGACAAAAAA
TAGCCGAAGCAGCCAAGCGAGATTTACGACAGGTCCTTACACTTTTGCCT
TTTTTCGTTCCAAATTTTTTGGGGTACGTACGCGCGTGCACATTTGCGAG
GTCGGAAGGTGAAGCGCCACTTCTTTCTCTGGAAAACAAGGAAGCTCGCT
GTGTGTTTGCCACTGCAGTCTTTAGGGAGAAATGTCGGGTGGAGATAAGG
GGCAAGGATGCTGCGGTACAAGACAAGCATGTGTTTGGTTCATCATGTGC
GAGTCTTTGGTGTCCTCGTTACCAACACACCTTGTTGAAGTCCATCATGT
TCTAAGGAACGGCACTCGTAGAGCTCATATTATGACCCGTGTGCGCGCAC
ATGCATGCGTGGCGGTTTGGCTCCTCTGTCATATCACGCTCATCCTGTAT
ATCTCCTCTTGCGTCCTACCAGCCGCCGCTGCTCGTCGGCGCGCCAGCTG
AGAGGGATTCTTGACACATCTCTCGTGTTGCTCGTCGGCCCTGCCTCCGG
CACGACTTGGGAACGCCTCCACTATCGGTCCTACCGTATTAGCTCTTCTG
CTCTCCTCCTGCAAGATCTGCTGCCGCCTGCGTTCTGTAGGTACTCAGGA
CTCTCCCCATTGGGCTCCGTCATCGCCAAGTGTATTTCGTCACTTTTCCC
ACCGCTGTGCTCCGGGAGAATTCCTGTGCTTCTCGGCTGCGGGATCGAAA
CCTCCCATTGCGAGAATGCTACCACTTTCTCGTCTCATCATCATGTTTGT
TCCTACTCTTCTCTGGTGTGTCGCCATCTTTCGTGCAGTTAGGCGTGGTG
TACCTGTAACAAGGTTTCCCTATCTACGAACGTGAAAAGGATGCATTTGC
TTACCGACGGAGTGACGATCTCCGCCGCCGCTCTTCCTTCACAAAGGTCT
TTTCGGGAACGGTGAAGCTTGGAACGGAAAAAACACATATCGGGACCGGT
TCTCCCGGTTCCTTCGCTCTTCTCTTTTCGCGGAGTACGTCGTCAAAGAC
AGGACAGTATCATAGTTTGGAAGTCTGCTTCAGCCGAACCGGTGTGATAT
CCAAGCCTCTCGAGGTGCGATCCGACGGAGCACCTCCAACGCGTCATGTG
ACTCGAAGCAAAGGTCATCCAAGTATGATGGCCGAGAACAGGTCAGCGTC
CCCCAACCTCCGGAAAAGATAAAAGGCCGCTGCCGCGCTCTTGTCTCCCC
GAAGCAGCGCCCGTCATGTCGCAAGGCCAATCTCGATCCGCCGCCGCTGC
TGGTGTTCGAGGCGGACGAGAGATCACCTGGAGCAACCGCCGGGGTGAAG
ACCTGGTGCAAGTATCTGGCGATGTTTGGTGTGCGGAGCGGCCTTTCGTG
TGGAATGGCATCGACGTAGGTGGGTTTCCCGCAAGCAACGGGGGCTAACA
GGTGGACGCCCGGAACCCCTCCTGGACCAGGTGGTGAGATCGTCGCAACT
CCGCCATGGGGGTAGAGGGGGGGTACGGGGTGTGCAAAATTGTCCACGTG
CAGCTAGCTGAATCGCTTTTGGCGGGCCCGATTTCTCGAGAGAAAACTGC
CGTCCGTCTTTGCATTGGCTAGCAGCCGTTGACAAATCGACCCCTGGTGT
TATTGCGATCAAGATTTTAATCGGTTCAGAGGGCGGGGAGGGCGTTCGCC
CCCGTTACCTCACGACTCTCGAATTCTCAGAGTCAAGAGTACATATACTC
TGGTGCCTTGGTTGTTGGTGCGTTTGCTTGGCATTCTCTTCATATGTGTT
CTCGAAGAGGTTAGGTCACGTAACATACAGTAGAAACGCGGAGGGTGAAA
CCTCTTTTGGATCGAGCCCGTATCTGATGCGGAAACCCTCTCGCTAGGCA
GCACACATAGGATTCCATGCCATCCATCCGTGAACGCTCTTCCCCTTCCC
CTCGCCCTGCCTATCTTGCTCGTCTTTCCCTGCTTCCCTCCCTGTCTCCC
CTAATCCTCGCTTTCTCTCCGACCCCCTCCCTGTCTCCCCCCTTGACCCC
CCCCCATCCCTCCCCCCTCCCCGTGTAATCGTGCTCATACGTTTCGCGCT
CCTTGCACGCACGTGGATACGTCCTTGCGTATGTCCTCGTCCCATCGTTT
TCTCCTTTCGATCGAACCAAACTGAAAGGTGGTCGCATGGCGGTGGTGAA
GCTCTCCGATGGGTCTCTCTGGGTTCACTCTCCCGTGGACCTCGACGCGC
CGCTCCGGGAGGCTCTCGCTGAGCTGGGGCCCGTGGGGCACATCGTCTCG
CCTAACTACGAGCACGTCAAGTGAGCGGAGGCGCGCAGAGGCGGCTTGGT
TTCCCTTGCCGCTCTACCGCCATTGCTCTGTATTGGTGCTGTTGCTATCG
TTGTGTTGTTGTTGTTGTTGTTGTTGTTATTGTTGTTGTTGTTGTTGTTG
CTGCTGCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGTTGCTGTT
ATTGTTGTTGTTGATGGTGGTGGTGCTAATGTCGCCGGTGCCGCTGTTGT
CGCCTTTCTTCGTACAAACGACCTTTCTTGACACCACCCCCACCTCCCGC
ACTCTTCCAAGCGGCACGCACCGAGCTCGTCACGCCTTTCGGTATCTCCT
TCGTGGGTGTAAAAGGCGTTTGGGGGTATCCCCCTGCCCCTCCTTGGAGG
CTTGTTTTCATCTCAAGGAAGGAGAGTCTCACGAACGCCTGCTTCTATCG
ATGATTCCGTCCGCGCTCCGCCCTGAACTCTCCGAGCAAGCAATTTATCG
CCAGTCCTCCCCGAGTCCTGCCTCACGAGGTGTCCCTTCCGTTTTGTTTG
GCACTCATGACAACCAGGCGGCGGTACACCTCCCTGGCAAATCATCCAAA
ACACCCGTTCGAACATCTGCTGCCGCTCTCTCCTCGATTCTTGATTCTGA
CCCTTCTGGTTTCCTCTCTCGCGACGGAGGCAACAGTTGAAAGCCCCGCA
CCGCTTCTTCGTTGTTTGAGGCAAGGGAGTGAGTGCTGTCTGTGTGTCCC
TCTCTGCCCGCTGTCTCTGTCTCTCTCGTGAGTATTGTCTGTTTTCTTTC
CCTCCTCTGCCTGTCTGTCTCTCTGTCGGTCCGTGTCCGTCTCCCTCCCC
CTTTCGGGGAGCAGGTACGCGAAGCAGTGGGTGGAGGCCTACCCGTCTGC
GAGATCATATGCGTGCCCTGGGTTGGCGGAGCGAGAGCCCGACGTGGGGT
TTACCCGGGAAGTAGGGGCGAGCCCCGACGATGAGAGCCCCCCGGAGTGA
GTTTTGTCGCGCATTGTTGTTGTTGTTGTGATTCGCCGTTGTCATATTTT
GCTGCCTGTTTGGGTGCCGTACCTCGCGCCTTCTTACCTTACATTCATCG
TGTGCAGTTTTTTCTCCAGCTTACCCCTTCCCCATCGCCCCTCTCCCGTC
CGCCCTGGTCGCAGGTGGAAGGGCGAGATCCAAGCGTGCTTAATGGACTG
CGAAACGAACCCTTTCACGGGCAAGCCTTTCTTTAACGAGGTGTGGCAAT
TTTGTCGTTGTTTCCTCCGAGTATGGAGCCCGCTCTTGCTCAATCGTTCA
GGATTCACCTTCACGGGTATCGTTTCCGGTTTTGAGTTTTTTGTGGACTC
TCCTCTTGAGCGTCATTCGCCTTGTGACCGGCCGACAACCGCGATTGGAG
ACCAGTAAGATGTCAATATGTGACGTTTCCCTGTTATGTGGTCCGCGCGA
AAATGCACGGGTCTGGTGGATGAGCAACCCCGCTAAGTTCATAGCCGCGT
GCGACTAGCCTCAGGTCTCCCGTTAAGCACCAAGGTTCTGTCCAGCACGC
GTTAGCGTTGCGTCTATGCTTGGATGTGTTTGGTCTGTCCAAATGCTGAA
CACGCGGCAGACAAGGCCGCATCGATTGAGTCAATCTCAACTGAGCTTGT
GGTGTCCGCGCCAGCCGGCCCGCGCCAGCCGGCCGGCCGACAATCTCGAA
ATTTCTGTGGGTGCGTTAGCGCCCGTTTTTTGCGTCGCGAAAAGTCAGCA
ACGATGGCGATGGCAGTTCTGAGCGTGGCGAAATAGTTTTTGCACGTGTG
CTTCTTCGATTTTCATTTGCTCGTATCAACTTGTCCGGCTGCTTGATCAA
AGGGATCGAAGGGAACAAACTCGCCACCCTCACGGTGACCCAAATATTTT
CTCGAACGCGTCTGAAGTGATTCTCCGTACTCGTGTCTGCGTTCGTGCGA
CCGTGGCGTTTCATACCCCAGGTCGTGTTTTTCCATCGGCCGACGAAGAC
CTTCATGGCCTCGGACCTGTACTGGAACTACCCCCGAAAAGATATACCCT
TCGGCACTAAAGTCTGGAAGTGGGGCATGGACAAGGTGATGGGTGGCTGT
GAGTTTTTTAAAGCAGGGGTACTGCTGTCGTTTCAGAACTCTTCTGTTTC
TATCTCAAGCGAAGAACGAATGCTTGTGCAGCGCACTACGTCGCAGGAGA
AGCAATGCGGCCGTGACACACCTGCATGCACGGGAGTACGTGTGGGTGAT
TCATGTTTTCGGCGCTAACAGCAACGGGACGAATCGATGCCGGAAACTGG
ATAATTGTAGCTGAAAACGGCGAGGCTTCATCATTCTCGAATTCGCCGCT
AGTCTAGTTGGTGATCGGACTCGAAGCCGTGGTGAGTGAAAATTCGGGCT
GAAAAAAGCGAAACTTGGAGTCGAAGGACACATTTTGTCCCCCGGTCCCC
TAACCACGACACGGAACTCCTTCGGGCCTGAACGTTTGGAACTTGGGAGG
GAGGGAGTCTTTCCTCCCCAAGTGTGTCCGCCTTTCCCTTTCATACGTAG
TCTCTGTTCGTGTGCGTGTTCTTCTCCCCCGTCTCGCCGTGCCTCTTTCT
CGCTCGCGCTGTCGTCTTGGGTCCCTCCTGTCTCTCCATGAAAAAGAGTC
GACGACACCAAAGGAAATACCCTCCTCTGAGACAGATTGTATCGACTCGG
TGGGGTTGTGTTGAGGTCCTTACGGTGAGGTTTCAGTATGATGGTGGTGA
AGTCTCTTTGTCCCGGTCCAACCCCTCCACTCTCCTCCCACCTTTTTACC
CGTGGGTGTTTCTGTCCCTGTTTCCGTCCCCCCCCACGTCTCTCTGTACA
CCGTCTGCGCACCTCTGGATTCAACCGAAGGTTTACCTCCCGTTTTACAA
GAGGTTCATGGTGACGGACGGAGCGGCCTTCGCCGCCAAAGTGAATCGCG
TACTGGACTGGGGGATCGAGACCATCGTCCCCTGCCACGGAGACGTGGTT
CGAAGCGAGGCAGCCCAGACCTTGCGCCAGAGGCTTCTAGGTAACGGACC
GGAATGACGAGGCCCGTAGCGGCTGACTTCCGTTCGATCCGAGAAGACGG
CTATTCATGAGCTGAAACCCTGGCCTATGTCCCCGGCAGCCGACCGCAAA
AACCCGTGTATCAATACGGCGTTGAGGCAGCGGGGGGGGGCAGGTCGACT
GGAACCGAACTTCCCCCGTGCCCTCCCCCCCCCCCTTCACCCCCGCCAGC
ATTATGCTGTCGACCTTCTCCCGAAGATGTTTGCCCTTTTCTCTCACTAC
GATGTTATAAAGGGTCGAATGGTTTCGAGCTGGAACAGCGTTCTCGGTGG
TGTGATTGTGGTTAAGGGGATCATGCACTTCGTACTCGACTAGAACGGGC
GATATTCGCTGGAGGGGTGGGGGAAGGGGCCAACTCCCACTGGTACGATG
GAGCTTGCTGACCGGGGGAACTGAGGCCCCCTCCACGCGAGGCCGCCTAA
CGTAGGGCAAAATTGGAGGAGGGCGCCCATAATCTTGATGATAAACCGGG
AGGTTAGCAGCGATCGCCTCCTACTGCAGCAATGTTAAAAGGACCGCCTC
TTAAAAGTTTTTTTGTATGATAAGAGATAAATGGAGGCGGGTTCCGCTCG
GGAAGACCAGCGTGACAAGCGAAGCATACGAAGCCGTCGCCTTTCCAAAG
GAACAGGCGTGAGACCTGTGGGATTTATGATCGGGAAAGGCGACTGAAGC
GAAAGTTCATGGATCGCCATGTAATCGTCCTTCAGTATGCAGGTGATCAA
GACCGAAACGTGTACCATAGCCTATCTTCTGCCGACTACTCGAGACTTGT
TCCTGCGTATCCGTACACGAAAATGTGAATCGCGTGCGGGGAAACGGTCG
ATTATAGTTCGGAGCACTGCTGTGCTTCATTTAGTTTGGGGCCACTTCAT
GCACATACCCCCCCCCGTCCGTGGGACCTGCGAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1222:7963..15546-

>mRNA_H-canaliculatus_F_contig1222.1908.1 ID=mRNA_H-canaliculatus_F_contig1222.1908.1|Name=mRNA_H-canaliculatus_F_contig1222.1908.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1602bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1222:7963..15546- (Hapterophycus canaliculatus Oshoro5f female)
ATGTCGCAAGGCCAATCTCGATCCGCCGCCGCTGCTGGTGTTCGAGGCGG
ACGAGAGATCACCTGGAGCAACCGCCGGGGTGAAGACCTGGTGCAAGTAT
CTGGCGATGTTTGGTGTGCGGAGCGGCCTTTCGTGTGGAATGGCATCGAC
GTAGATGTCGCAAGGCCAATCTCGATCCGCCGCCGCTGCTGGTGTTCGAG
GCGGACGAGAGATCACCTGGAGCAACCGCCGGGGTGAAGACCTGGTGCAA
GTATCTGGCGATGTTTGGTGTGCGGAGCGGCCTTTCGTGTGGAATGGCAT
CGACGTAGGTGGTCGCATGGCGGTGGTGAAGCTCTCCGATGGGTCTCTCT
GGGTTCACTCTCCCGTGGACCTCGACGCGCCGCTCCGGGAGGCTCTCGCT
GAGCTGGGGCCCGTGGGGCACATCGTCTCGCCTAACTACGAGCACGTCAA
GTGGTCGCATGGCGGTGGTGAAGCTCTCCGATGGGTCTCTCTGGGTTCAC
TCTCCCGTGGACCTCGACGCGCCGCTCCGGGAGGCTCTCGCTGAGCTGGG
GCCCGTGGGGCACATCGTCTCGCCTAACTACGAGCACGTCAAGTACGCGA
AGCAGTGGGTGGAGGCCTACCCGTCTGCGAGATCATATGCGTGCCCTGGG
TTGGCGGAGCGAGAGCCCGACGTGGGGTTTACCCGGGAAGTAGGGGCGAG
CCCCGACGATGAGAGCCCCCCGGAGTACGCGAAGCAGTGGGTGGAGGCCT
ACCCGTCTGCGAGATCATATGCGTGCCCTGGGTTGGCGGAGCGAGAGCCC
GACGTGGGGTTTACCCGGGAAGTAGGGGCGAGCCCCGACGATGAGAGCCC
CCCGGAGTGGAAGGGCGAGATCCAAGCGTGCTTAATGGACTGCGAAACGA
ACCCTTTCACGGGCAAGCCTTTCTTTAACGAGGTGGAAGGGCGAGATCCA
AGCGTGCTTAATGGACTGCGAAACGAACCCTTTCACGGGCAAGCCTTTCT
TTAACGAGGTCGTGTTTTTCCATCGGCCGACGAAGACCTTCATGGCCTCG
GACCTGTACTGGAACTACCCCCGAAAAGATATACCCTTCGGCACTAAAGT
CTGGAAGTGGGGCATGGACAAGGTGATGGGTGGCTGTGAGTTTTTTAAAG
CAGGGGTACTGCTGTCGTTTCAGAACTCTTCTGTTTCTATCTCAAGCGAA
GAACGAATGCTTGTGCAGCGCACTACGTCGCAGGAGAAGCAATGCGGCCG
TGACACACCTGCATGCACGGGAGTACGTGTGGGTGATTCATGTTTTCGGC
GCTAAGTCGTGTTTTTCCATCGGCCGACGAAGACCTTCATGGCCTCGGAC
CTGTACTGGAACTACCCCCGAAAAGATATACCCTTCGGCACTAAAGTCTG
GAAGTGGGGCATGGACAAGGTGATGGGTGGCTGTGAGTTTTTTAAAGCAG
GGGTACTGCTGTCGTTTCAGAACTCTTCTGTTTCTATCTCAAGCGAAGAA
CGAATGCTTGTGCAGCGCACTACGTCGCAGGAGAAGCAATGCGGCCGTGA
CACACCTGCATGCACGGGAGTACGTGTGGGTGATTCATGTTTTCGGCGCT
AA
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