mRNA_H-canaliculatus_F_contig12218.1904.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12218.1904.1
Unique NamemRNA_H-canaliculatus_F_contig12218.1904.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12218.1904.1 vs. uniprot
Match: A0A6H5JMP6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP6_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 3.220e-33
Identity = 72/146 (49.32%), Postives = 94/146 (64.38%), Query Frame = -2 
Query:  193 VRFQGGVARILGRPFRVDCIM*PTRDTVRIIPLGRRSNGAESEWLTENEMLKSFTLLQLHSFVALWRLHHPQAAAELT-VAPRKRVSLSLWEALRLFPVGFTFLKDFGGGLALQGQVYDFHSPYWRVRYPNQNWEELSRAKLGKLS 627
            V+   G A +L      DC    +R  V     G+  +GA S+WL+E+ ML+SFT LQL  FVALW L+HPQ A +L  V+ + R  LS  EAL+LFP+ FT  K+  GG+ LQGQV+DF  PYWRV Y +QNWEEL+R +L +LS
Sbjct:  729 VKLPSGAAELLEFVSIADCRRSRSRTQVVWEYRGKLGSGAVSDWLSEDVMLRSFTPLQLDGFVALWHLYHPQQANDLPPVSVKPRAPLSRAEALKLFPIDFTLRKELDGGVNLQGQVFDFLQPYWRVGYSDQNWEELARRELERLS 874
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BLAST of mRNA_H-canaliculatus_F_contig12218.1904.1 vs. uniprot
Match: A0A6H5KEH2_9PHAE (RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 2.330e-30
Identity = 62/113 (54.87%), Postives = 78/113 (69.03%), Query Frame = -2 
Query:  193 GRRSNGAESEWLTENEMLKSFTLLQLHSFVALWRLHHPQAA-AELTVAPRKRVSLSLWEALRLFPVGFTFLKDFGGGLALQGQVYDFHSPYWRVRYPNQNWEELSRAKLGKLS 528
            G+  NG  S+WL E  M +SFT LQL  FVALW L+ PQ A A    + + R  LS  +AL +FP+GFTF K+  GG+ LQGQVYD+ SPYWRVRY + NWEELSR +L +L+
Sbjct: 1768 GKSGNGVVSDWLPEETMRRSFTPLQLDCFVALWHLYFPQLANASAPDSVKPRTPLSRAQALHVFPIGFTFQKELAGGILLQGQVYDYVSPYWRVRYTDGNWEELSRRELERLA 1880
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BLAST of mRNA_H-canaliculatus_F_contig12218.1904.1 vs. uniprot
Match: A0A6H5KNQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ8_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.120e-17
Identity = 48/112 (42.86%), Postives = 65/112 (58.04%), Query Frame = -2 
Query:  211 GRRSNGAESEWLTENEMLKSFTLLQLHSFVALWRLHHPQAAAELTVAPRK--RVSLSLWEALRLFP----VGFTFLKDFGGGLALQGQVYDFHSPYWRVRYPNQNWEELSRA 528
            GR  +GA+S+W+TE+E   SF+ LQL  F ALW LHHP  A   T  P +  R   S   AL +FP    VG  F+   G     + +VYD+  PYWRV YP+ +WE L+++
Sbjct: 1542 GRYQDGAQSDWITEDEARDSFSPLQLDVFHALWELHHPSDATRPTGEPTRGEREVESRDRALEMFPRGTEVGRVFMDAEGRSKTFKAKVYDYCDPYWRVEYPDGDWEALTKS 1653
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BLAST of mRNA_H-canaliculatus_F_contig12218.1904.1 vs. uniprot
Match: A0A6H5JAJ3_9PHAE (RT_RNaseH_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAJ3_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.190e-10
Identity = 43/116 (37.07%), Postives = 63/116 (54.31%), Query Frame = -2 
Query:  190 NGAESEWLTENEMLKSFTLLQLHSFVALWRLHHPQAAAELTVAPR---KRVSLSLWEALRLFPVGFTFLKDF----GGGLALQGQVYDFHSPYWRVRYPNQNWEELSRAKLGKLSG 516
            +GA S W TE E+  SF+ LQL  F AL+ L + +  A     P    +R   S  +AL+LFPVG    ++F    G     +   +D   PYWRV YP+ +WEEL+++++ K  G
Sbjct: 1822 DGALSPWPTEEEVGDSFSPLQLDVFHALYELFYGENGAPRPAGPPTRGEREVASREQALQLFPVGTQVGREFADSDGHLKVFKATAFDCCDPYWRVEYPDGDWEELTKSEMDKGIG 1937
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BLAST of mRNA_H-canaliculatus_F_contig12218.1904.1 vs. uniprot
Match: A0A6H5K3V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3V4_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.990e-10
Identity = 45/120 (37.50%), Postives = 63/120 (52.50%), Query Frame = -2 
Query:  205 GRRSNGAESEWLTENEMLKSFTLLQLHSFVALWRLHHPQAAAELTVAPRKRVSLSLWE--------ALRLFP----VGFTFLKDFGGGLALQGQVYDFHSPYWRVRYPNQNWEELSRAKL 528
            G+   G  S+WLTE+ +  SF+ LQL  F AL   +H        VAPR   +LS  E        AL+ FP    V    L   G  +  +G+V DF+ PYWRV++ + +WEEL+R +L
Sbjct: 2115 GKYQEGTPSDWLTEDTVKDSFSPLQLGIFHALCEDYHGT-----DVAPRPPGALSRGEHEVATREAALKEFPLDTEVARELLDSDGNVVVSRGKVCDFYDPYWRVKFSDDDWEELTRREL 2229
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BLAST of mRNA_H-canaliculatus_F_contig12218.1904.1 vs. uniprot
Match: A0A6H5KBF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF4_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.720e-9
Identity = 29/43 (67.44%), Postives = 32/43 (74.42%), Query Frame = -2 
Query:  205 GFTFLKDFGGGLALQGQVYDFHSPYWRVRYPNQNWEELSRAKL 333
            GFT  KDFGGG  LQGQV+     YWRVRY NQNWEEL+R +L
Sbjct: 1080 GFTSQKDFGGGQKLQGQVFGHRDRYWRVRYSNQNWEELTRQEL 1122
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BLAST of mRNA_H-canaliculatus_F_contig12218.1904.1 vs. uniprot
Match: A0A6H5LDH3_9PHAE (RT_RNaseH_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDH3_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 6.360e-5
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = -2 
Query:  193 FTFLKDFGGGLALQGQVYDFHSPYWRVRYPNQNWEELSRAKLGKLS 330
            F   +   GG+ LQGQVYD+ S  WRVRY + NWEELSR +L + S
Sbjct:  920 FYLPEGVAGGILLQGQVYDYLSHCWRVRYIDGNWEELSRRELERPS 965
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12218.1904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JMP6_9PHAE3.220e-3349.32Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KEH2_9PHAE2.330e-3054.87RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A6H5KNQ8_9PHAE1.120e-1742.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAJ3_9PHAE1.190e-1037.07RT_RNaseH_2 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5K3V4_9PHAE2.990e-1037.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBF4_9PHAE1.720e-967.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LDH3_9PHAE6.360e-554.35RT_RNaseH_2 domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12218contigH-canaliculatus_F_contig12218:2753..3386 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size636
Cds size495
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928936.1271682-CDS-H-canaliculatus_F_contig12218:2752..32471622928936.1271682-CDS-H-canaliculatus_F_contig12218:2752..3247Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12218 2753..3247 +
1696845619.5488496-CDS-H-canaliculatus_F_contig12218:2752..32471696845619.5488496-CDS-H-canaliculatus_F_contig12218:2752..3247Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12218 2753..3247 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928936.1412745-UTR-H-canaliculatus_F_contig12218:3247..33861622928936.1412745-UTR-H-canaliculatus_F_contig12218:3247..3386Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12218 3248..3386 +
1696845619.5626245-UTR-H-canaliculatus_F_contig12218:3247..33861696845619.5626245-UTR-H-canaliculatus_F_contig12218:3247..3386Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12218 3248..3386 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12218.1904.1prot_H-canaliculatus_F_contig12218.1904.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12218 2753..3247 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12218.1904.1

>prot_H-canaliculatus_F_contig12218.1904.1 ID=prot_H-canaliculatus_F_contig12218.1904.1|Name=mRNA_H-canaliculatus_F_contig12218.1904.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=165bp
VLRIPVYIETATPTVFTPRLKSKSTILNLRSQGNSSHGSPASLGLLARAP
PSRLRYWAPDAALARQFPQFRSAEFLPVLVWVPHPPIRAVEVVNLALQGQ
TSAKVLQESESYREQPQGFPERQGDAFARGDGEFGGSLRMVQAPEGDETM
KLQQGERFEHLVLR*
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mRNA from alignment at H-canaliculatus_F_contig12218:2753..3386+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12218.1904.1 ID=mRNA_H-canaliculatus_F_contig12218.1904.1|Name=mRNA_H-canaliculatus_F_contig12218.1904.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=634bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12218:2753..3386+ (Hapterophycus canaliculatus Oshoro5f female)
GTTCTGCGAATCCCAGTCTACATCGAAACCGCCACCCCGACTGTCTTCAC
TCCACGCCTGAAATCAAAGTCGACGATCCTCAATCTACGCAGTCAAGGCA
ATTCTTCACACGGCTCCCCAGCTTCCCTCGGTCTCCTGGCTCGAGCGCCT
CCCTCCCGATTACGATACTGGGCTCCTGATGCGGCTCTTGCCCGACAGTT
TCCCCAGTTTCGCTCGGCTGAGTTCCTCCCAGTTTTGGTTTGGGTACCGC
ACCCTCCAATAAGGGCTGTGGAAGTCGTAAACCTGGCCTTGCAAGGCCAG
ACCTCCGCCAAAGTCCTTCAAGAAAGTGAATCCTACCGGGAACAGCCGCA
GGGCTTCCCAGAGAGACAGGGAGACGCGTTTGCGAGGGGCGACGGTGAGT
TCGGCGGCAGCTTGCGGATGGTGCAAGCGCCAGAGGGCGACGAAACTATG
AAGTTGCAGCAGGGTGAACGATTTGAGCATCTCGTTCTCCGTTAACCACT
CCGATTCGGCTCCATTGCTACGCCTACCCAGCGGTATGATCCGGACGGTG
TCACGAGTCGGTTACATGATGCAATCGACTCGAAAGGGGCGGCCAAGGAT
TCTGGCGACGCCTCCTTGAAATCTGACCCCCAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12218:2753..3386+

>mRNA_H-canaliculatus_F_contig12218.1904.1 ID=mRNA_H-canaliculatus_F_contig12218.1904.1|Name=mRNA_H-canaliculatus_F_contig12218.1904.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=990bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12218:2753..3386+ (Hapterophycus canaliculatus Oshoro5f female)
GTTCTGCGAATCCCAGTCTACATCGAAACCGCCACCCCGACTGTCTTCAC
TCCACGCCTGAAATCAAAGTCGACGATCCTCAATCTACGCAGTCAAGGCA
ATTCTTCACACGGCTCCCCAGCTTCCCTCGGTCTCCTGGCTCGAGCGCCT
CCCTCCCGATTACGATACTGGGCTCCTGATGCGGCTCTTGCCCGACAGTT
TCCCCAGTTTCGCTCGGCTGAGTTCCTCCCAGTTTTGGTTTGGGTACCGC
ACCCTCCAATAAGGGCTGTGGAAGTCGTAAACCTGGCCTTGCAAGGCCAG
ACCTCCGCCAAAGTCCTTCAAGAAAGTGAATCCTACCGGGAACAGCCGCA
GGGCTTCCCAGAGAGACAGGGAGACGCGTTTGCGAGGGGCGACGGTGAGT
TCGGCGGCAGCTTGCGGATGGTGCAAGCGCCAGAGGGCGACGAAACTATG
AAGTTGCAGCAGGGTGAACGATTTGAGCATCTCGTTCTCCGTTAAGTTCT
GCGAATCCCAGTCTACATCGAAACCGCCACCCCGACTGTCTTCACTCCAC
GCCTGAAATCAAAGTCGACGATCCTCAATCTACGCAGTCAAGGCAATTCT
TCACACGGCTCCCCAGCTTCCCTCGGTCTCCTGGCTCGAGCGCCTCCCTC
CCGATTACGATACTGGGCTCCTGATGCGGCTCTTGCCCGACAGTTTCCCC
AGTTTCGCTCGGCTGAGTTCCTCCCAGTTTTGGTTTGGGTACCGCACCCT
CCAATAAGGGCTGTGGAAGTCGTAAACCTGGCCTTGCAAGGCCAGACCTC
CGCCAAAGTCCTTCAAGAAAGTGAATCCTACCGGGAACAGCCGCAGGGCT
TCCCAGAGAGACAGGGAGACGCGTTTGCGAGGGGCGACGGTGAGTTCGGC
GGCAGCTTGCGGATGGTGCAAGCGCCAGAGGGCGACGAAACTATGAAGTT
GCAGCAGGGTGAACGATTTGAGCATCTCGTTCTCCGTTAA
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