mRNA_H-canaliculatus_F_contig1221.1897.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1221.1897.1
Unique NamemRNA_H-canaliculatus_F_contig1221.1897.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1221.1897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1221contigH-canaliculatus_F_contig1221:914..2333 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSH3 domain
Ec32 orthologEc-27_003640.1
Exons3
Model size458
Cds size288
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1221.1897.1prot_H-canaliculatus_F_contig1221.1897.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1221 936..2064 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928935.2130613-UTR-H-canaliculatus_F_contig1221:913..9351622928935.2130613-UTR-H-canaliculatus_F_contig1221:913..935Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1221 914..935 +
1696845619.261655-UTR-H-canaliculatus_F_contig1221:913..9351696845619.261655-UTR-H-canaliculatus_F_contig1221:913..935Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1221 914..935 +
1622928935.2761824-UTR-H-canaliculatus_F_contig1221:2064..20871622928935.2761824-UTR-H-canaliculatus_F_contig1221:2064..2087Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1221 2065..2087 +
1696845619.2874355-UTR-H-canaliculatus_F_contig1221:2064..20871696845619.2874355-UTR-H-canaliculatus_F_contig1221:2064..2087Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1221 2065..2087 +
1622928935.3492138-UTR-H-canaliculatus_F_contig1221:2208..23331622928935.3492138-UTR-H-canaliculatus_F_contig1221:2208..2333Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1221 2209..2333 +
1696845619.295841-UTR-H-canaliculatus_F_contig1221:2208..23331696845619.295841-UTR-H-canaliculatus_F_contig1221:2208..2333Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1221 2209..2333 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928935.244311-CDS-H-canaliculatus_F_contig1221:935..10461622928935.244311-CDS-H-canaliculatus_F_contig1221:935..1046Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1221 936..1046 +
1696845619.2701685-CDS-H-canaliculatus_F_contig1221:935..10461696845619.2701685-CDS-H-canaliculatus_F_contig1221:935..1046Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1221 936..1046 +
1622928935.2606325-CDS-H-canaliculatus_F_contig1221:1887..20641622928935.2606325-CDS-H-canaliculatus_F_contig1221:1887..2064Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1221 1888..2064 +
1696845619.2787778-CDS-H-canaliculatus_F_contig1221:1887..20641696845619.2787778-CDS-H-canaliculatus_F_contig1221:1887..2064Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1221 1888..2064 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1221.1897.1

>prot_H-canaliculatus_F_contig1221.1897.1 ID=prot_H-canaliculatus_F_contig1221.1897.1|Name=mRNA_H-canaliculatus_F_contig1221.1897.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=96bp
MKGQEDIWMVAKKLKSLNRRRVAPPPVRWADCSESEWAYLIWQPEHTADA
GQKTKMLSHTLPPCTNAPIRLLCGTCLVLYRERTVPTEALDFARM*
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mRNA from alignment at H-canaliculatus_F_contig1221:914..2333+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1221.1897.1 ID=mRNA_H-canaliculatus_F_contig1221.1897.1|Name=mRNA_H-canaliculatus_F_contig1221.1897.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1420bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1221:914..2333+ (Hapterophycus canaliculatus Oshoro5f female)
GGGCTCCGGGGCCAAGAAGAGCATGAAGGGGCAGGAAGACATCTGGATGG
TCGCGAAGAAGCTCAAGTCCCTCAACCGACGGCGAGTTGCGCCACCCCCG
GTGCGCTGGGCAGACTGCAGCGAGTCGGAGTGGGTGAGACGGGGGCCTAC
TGAGGTCTCCTTGACCGTGCGGAGGGACTCGGTCCCTCTTTCCGGTTGGA
GTTTCGGCTGCTGAATCAGTCGATGAGCCCCTCTCCACTGATAGTATTCC
CCTGCTTTTTCGCTTTGCTCGCTGAGGGTCTACCTGCCATCCCCACCTCC
CCTCCCCCAAGCTTGGCTCTGCAAGAGTGGCCTATGATGTGCTCCAGGAC
TGTCGTGTCACTGGGTTTGATGGTGCTGTCTGCACTGCTTGCAAGCTTTC
GTTGCCCCAGACACTGGGCGAGGTGACCCAAAGTCCCGATTCGGCTTACG
ATGGCAATCAATCCATCAGCGATCAGGCGCCCTCCGCGTCGATCTAGGTT
CCCTGCTGCCCTGGTCCTTGCGACAAGTTGTTTGCAATCGTGGATTGTCG
AAGGAGTCTACTTTCATGCAGATCTCAACGACGGAGCAGCAATAGCACCA
GCACCAGCAGCGGCAGCGGCAGCAAGACAACTATTGTTATCGGGGAATTC
GGTATCCCCCGTCTGACGCTCCGCCTCTTTAACCCCCCCCTTGTAACGGT
TCCGCTGTTTCCTGGGAGTCCAGAAAGACATGAAGGGCGCTGCTCTCAGG
AAATTCCTGGAAGAAGCAAAGCAATGGCCAAATCTCAAGCACTCTCAAGA
CCTGAAGCACTTCCTGACAACCGACAGGTGACTTTCTTTTTCTTGGACTG
TAGCTCCTGAGCTAGCAAGGCGTGAGGGGAGATCGAGGATCGGGCTGGCT
TTCCACTTGTTCTTCCTCGTCTCTACGTGCATCAGACTATGAGTCTGTGC
ACCTCGTGGTGGAGGTTTTCTGAGGCCTATCTGATCTGGCAACCTGAACA
TACGGCTGACGCCGGACAAAAGACGAAAATGCTTTCTCACACTCTTCCTC
CTTGCACCAATGCACCAATCCGCCTTCTCTGCGGCACCTGCCTTGTGCTA
TATCGCGAGAGAACCGTGCCAACCGAAGCCTTGGACTTCGCTCGGATGTG
ATGATGATGGTGGCGGTGGTGGTGGTGGTTTTTAAAGAAAACATAACAAC
ACCGTTAGGACACCTCCTGAGGTACGTCGTGTGAGGCGTACCCCGAGGCT
TCTGTTGAGTTCAAAACAGTGAGGGTTCATTGATGGGGACAAAAGCATGT
TTTTCATTCGTGTCCTCAACGTCGTGTCATCCGTGTATGTAGGGTTCACT
TATCGGGGGGTATTGTCAGCCAGAAGACCATGAAGACCTTCCTCGACACC
TAGATTAAGGCAAGTGACGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1221:914..2333+

>mRNA_H-canaliculatus_F_contig1221.1897.1 ID=mRNA_H-canaliculatus_F_contig1221.1897.1|Name=mRNA_H-canaliculatus_F_contig1221.1897.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=576bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1221:914..2333+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAAGGGGCAGGAAGACATCTGGATGGTCGCGAAGAAGCTCAAGTCCCT
CAACCGACGGCGAGTTGCGCCACCCCCGGTGCGCTGGGCAGACTGCAGCG
AGTCGGAGTGGATGAAGGGGCAGGAAGACATCTGGATGGTCGCGAAGAAG
CTCAAGTCCCTCAACCGACGGCGAGTTGCGCCACCCCCGGTGCGCTGGGC
AGACTGCAGCGAGTCGGAGTGGGCCTATCTGATCTGGCAACCTGAACATA
CGGCTGACGCCGGACAAAAGACGAAAATGCTTTCTCACACTCTTCCTCCT
TGCACCAATGCACCAATCCGCCTTCTCTGCGGCACCTGCCTTGTGCTATA
TCGCGAGAGAACCGTGCCAACCGAAGCCTTGGACTTCGCTCGGATGTGAG
CCTATCTGATCTGGCAACCTGAACATACGGCTGACGCCGGACAAAAGACG
AAAATGCTTTCTCACACTCTTCCTCCTTGCACCAATGCACCAATCCGCCT
TCTCTGCGGCACCTGCCTTGTGCTATATCGCGAGAGAACCGTGCCAACCG
AAGCCTTGGACTTCGCTCGGATGTGA
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