mRNA_H-canaliculatus_F_contig12207.1894.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12207.1894.1
Unique NamemRNA_H-canaliculatus_F_contig12207.1894.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12207.1894.1 vs. uniprot
Match: A0A6H5K608_9PHAE (Acetyl-CoA carboxylase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K608_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.340e-18
Identity = 58/103 (56.31%), Postives = 67/103 (65.05%), Query Frame = 2 
Query:  458 QISRADPSVSPLAANALLRNWFLSDGSAANAGGAGVSQGTAWEEDKGVLAWMENKAGSIKGHLKQLEFGDVSAQVM----MSDEVRSGILLRAFGVLSMDSRR 754
            Q+SRADPSV PLAA+ LL++W+LSD   A   GA       WEEDK VLAWMENKAGSIKGH++QL FG VS QV      S E     LL A G LS  +R+
Sbjct: 2175 QVSRADPSVDPLAASGLLKDWYLSD---AEVNGARP----CWEEDKAVLAWMENKAGSIKGHMEQLRFGRVSTQVSELASASPEAVLEGLLSAKGGLSKSARQ 2270
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12207.1894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K608_9PHAE1.340e-1856.31Acetyl-CoA carboxylase n=1 Tax=Ectocarpus sp. CCAP... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12207contigH-canaliculatus_F_contig12207:671..1777 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size885
Cds size855
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12207.1894.1prot_H-canaliculatus_F_contig12207.1894.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12207 678..1754 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928934.6930552-UTR-H-canaliculatus_F_contig12207:670..6771622928934.6930552-UTR-H-canaliculatus_F_contig12207:670..677Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12207 671..677 +
1696845619.1409585-UTR-H-canaliculatus_F_contig12207:670..6771696845619.1409585-UTR-H-canaliculatus_F_contig12207:670..677Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12207 671..677 +
1622928934.7292085-UTR-H-canaliculatus_F_contig12207:1754..17771622928934.7292085-UTR-H-canaliculatus_F_contig12207:1754..1777Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12207 1755..1777 +
1696845619.1712487-UTR-H-canaliculatus_F_contig12207:1754..17771696845619.1712487-UTR-H-canaliculatus_F_contig12207:1754..1777Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12207 1755..1777 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928934.7085834-CDS-H-canaliculatus_F_contig12207:677..12921622928934.7085834-CDS-H-canaliculatus_F_contig12207:677..1292Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12207 678..1292 +
1696845619.1500075-CDS-H-canaliculatus_F_contig12207:677..12921696845619.1500075-CDS-H-canaliculatus_F_contig12207:677..1292Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12207 678..1292 +
1622928934.719291-CDS-H-canaliculatus_F_contig12207:1514..17541622928934.719291-CDS-H-canaliculatus_F_contig12207:1514..1754Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12207 1515..1754 +
1696845619.1602445-CDS-H-canaliculatus_F_contig12207:1514..17541696845619.1602445-CDS-H-canaliculatus_F_contig12207:1514..1754Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12207 1515..1754 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12207.1894.1

>prot_H-canaliculatus_F_contig12207.1894.1 ID=prot_H-canaliculatus_F_contig12207.1894.1|Name=mRNA_H-canaliculatus_F_contig12207.1894.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=285bp
MWCALHFLFFWEYVRRASIHSHMTPPGYFLGLHPCCSFFMPGRPLSPVFL
FAAAAPAVASVAVAGADVGCFHGASPPYPFSHSYASLLWKHLDVDTHLAP
TRARRRPGVALVAQVFVQSRLRVRNFWFCLLLALILAACGEQLRYTTTPP
QISRADPSVSPLAANALLRNWFLSDGSAANAGGAGVSQGTAWEEDKGVLA
WMENKAGSIKGHLKQLEFGDVSAQVMMSDEVRSGILLRAFGVLSMDSRRR
SFGYAFVGGQLSCNQLAKQCCRLVGTVLEAHDHR*
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mRNA from alignment at H-canaliculatus_F_contig12207:671..1777+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12207.1894.1 ID=mRNA_H-canaliculatus_F_contig12207.1894.1|Name=mRNA_H-canaliculatus_F_contig12207.1894.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1107bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12207:671..1777+ (Hapterophycus canaliculatus Oshoro5f female)
GACGGCCATGTGGTGCGCCTTGCATTTTCTGTTCTTTTGGGAGTACGTCC
GGAGGGCTTCGATTCACTCGCACATGACTCCCCCAGGGTATTTTCTCGGT
TTACACCCATGTTGTAGTTTTTTTATGCCTGGAAGACCCCTCTCACCCGT
TTTCTTGTTTGCAGCAGCTGCCCCCGCTGTTGCCTCTGTTGCTGTCGCTG
GTGCTGATGTTGGATGCTTTCATGGGGCCTCTCCCCCCTACCCTTTCTCC
CACAGCTACGCTTCTTTGCTGTGGAAGCACCTTGATGTAGACACGCACTT
GGCGCCGACCCGCGCACGACGCAGACCCGGAGTTGCCTTGGTGGCGCAGG
TCTTCGTACAGTCTCGCTTGCGCGTGCGCAACTTTTGGTTCTGTCTGTTA
CTGGCCCTTATCCTGGCCGCGTGCGGTGAACAACTGCGTTACACCACCAC
ACCCCCGCAGATCTCTCGGGCCGACCCTTCGGTGAGCCCCCTGGCGGCAA
ACGCTCTGCTCAGGAACTGGTTTCTGTCCGACGGCTCAGCGGCAAATGCT
GGCGGCGCCGGAGTCAGCCAGGGCACCGCGTGGGAGGAGGACAAGGGCGT
GCTCGCGTGGATGGAAAACAAGGTGTGTGGGCACCAGGCGTTTGGTTCGG
TTGTTTTCGTTTCAGTGTCAGCAGCGTTGTTGAACACCCTGCGCCCTCAC
CGGAGTAGACTTAGCAACCATGCCTCGTGTCTCGGTCCCGCCCTCGGTTC
CGCACACAGGCTCCTCGGTTTCGCCCCCAGGCCCCCTTGCTGAAGTATTT
CAACCTCTCCCGCTCGTTCTCGTGCTCGATGCTGATGTTGACAGGCAGGG
TCCATCAAGGGACACCTGAAGCAGCTGGAGTTCGGTGACGTGTCAGCGCA
GGTGATGATGTCTGATGAAGTCCGCAGCGGCATCCTTCTCCGTGCCTTTG
GAGTCCTCTCGATGGACTCCAGACGCCGGTCGTTCGGCTACGCTTTCGTG
GGCGGTCAGCTTTCATGCAACCAACTGGCCAAGCAATGCTGCCGTCTAGT
CGGTACCGTCTTGGAAGCTCACGATCACAGATGAACCCGTGCTTGGTCCT
TGGCGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12207:671..1777+

>mRNA_H-canaliculatus_F_contig12207.1894.1 ID=mRNA_H-canaliculatus_F_contig12207.1894.1|Name=mRNA_H-canaliculatus_F_contig12207.1894.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1710bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12207:671..1777+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTGGTGCGCCTTGCATTTTCTGTTCTTTTGGGAGTACGTCCGGAGGGC
TTCGATTCACTCGCACATGACTCCCCCAGGGTATTTTCTCGGTTTACACC
CATGTTGTAGTTTTTTTATGCCTGGAAGACCCCTCTCACCCGTTTTCTTG
TTTGCAGCAGCTGCCCCCGCTGTTGCCTCTGTTGCTGTCGCTGGTGCTGA
TGTTGGATGCTTTCATGGGGCCTCTCCCCCCTACCCTTTCTCCCACAGCT
ACGCTTCTTTGCTGTGGAAGCACCTTGATGTAGACACGCACTTGGCGCCG
ACCCGCGCACGACGCAGACCCGGAGTTGCCTTGGTGGCGCAGGTCTTCGT
ACAGTCTCGCTTGCGCGTGCGCAACTTTTGGTTCTGTCTGTTACTGGCCC
TTATCCTGGCCGCGTGCGGTGAACAACTGCGTTACACCACCACACCCCCG
CAGATCTCTCGGGCCGACCCTTCGGTGAGCCCCCTGGCGGCAAACGCTCT
GCTCAGGAACTGGTTTCTGTCCGACGGCTCAGCGGCAAATGCTGGCGGCG
CCGGAGTCAGCCAGGGCACCGCGTGGGAGGAGGACAAGGGCGTGCTCGCG
TGGATGGAAAACAAGATGTGGTGCGCCTTGCATTTTCTGTTCTTTTGGGA
GTACGTCCGGAGGGCTTCGATTCACTCGCACATGACTCCCCCAGGGTATT
TTCTCGGTTTACACCCATGTTGTAGTTTTTTTATGCCTGGAAGACCCCTC
TCACCCGTTTTCTTGTTTGCAGCAGCTGCCCCCGCTGTTGCCTCTGTTGC
TGTCGCTGGTGCTGATGTTGGATGCTTTCATGGGGCCTCTCCCCCCTACC
CTTTCTCCCACAGCTACGCTTCTTTGCTGTGGAAGCACCTTGATGTAGAC
ACGCACTTGGCGCCGACCCGCGCACGACGCAGACCCGGAGTTGCCTTGGT
GGCGCAGGTCTTCGTACAGTCTCGCTTGCGCGTGCGCAACTTTTGGTTCT
GTCTGTTACTGGCCCTTATCCTGGCCGCGTGCGGTGAACAACTGCGTTAC
ACCACCACACCCCCGCAGATCTCTCGGGCCGACCCTTCGGTGAGCCCCCT
GGCGGCAAACGCTCTGCTCAGGAACTGGTTTCTGTCCGACGGCTCAGCGG
CAAATGCTGGCGGCGCCGGAGTCAGCCAGGGCACCGCGTGGGAGGAGGAC
AAGGGCGTGCTCGCGTGGATGGAAAACAAGGCAGGGTCCATCAAGGGACA
CCTGAAGCAGCTGGAGTTCGGTGACGTGTCAGCGCAGGTGATGATGTCTG
ATGAAGTCCGCAGCGGCATCCTTCTCCGTGCCTTTGGAGTCCTCTCGATG
GACTCCAGACGCCGGTCGTTCGGCTACGCTTTCGTGGGCGGTCAGCTTTC
ATGCAACCAACTGGCCAAGCAATGCTGCCGTCTAGTCGGTACCGTCTTGG
AAGCTCACGATCACAGATGAGCAGGGTCCATCAAGGGACACCTGAAGCAG
CTGGAGTTCGGTGACGTGTCAGCGCAGGTGATGATGTCTGATGAAGTCCG
CAGCGGCATCCTTCTCCGTGCCTTTGGAGTCCTCTCGATGGACTCCAGAC
GCCGGTCGTTCGGCTACGCTTTCGTGGGCGGTCAGCTTTCATGCAACCAA
CTGGCCAAGCAATGCTGCCGTCTAGTCGGTACCGTCTTGGAAGCTCACGA
TCACAGATGA
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