mRNA_H-canaliculatus_F_contig12207.1893.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12207.1893.1
Unique NamemRNA_H-canaliculatus_F_contig12207.1893.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12207.1893.1 vs. uniprot
Match: D8LHP3_ECTSI (Acetyl-CoA carboxylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHP3_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 5.810e-8
Identity = 29/41 (70.73%), Postives = 36/41 (87.80%), Query Frame = 3 
Query:  369 QDLDSGVEFLLDLFPQYRREAPSYSEGAMNALHILPHSNPI 491
            QDLDSG+E LL++FPQYR EAP+ +EGA+NALHI+  SNPI
Sbjct: 1233 QDLDSGMESLLEVFPQYRGEAPACAEGAVNALHIVLLSNPI 1273
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BLAST of mRNA_H-canaliculatus_F_contig12207.1893.1 vs. uniprot
Match: A0A6H5K608_9PHAE (Acetyl-CoA carboxylase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K608_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.980e-7
Identity = 28/41 (68.29%), Postives = 36/41 (87.80%), Query Frame = 3 
Query:  369 QDLDSGVEFLLDLFPQYRREAPSYSEGAMNALHILPHSNPI 491
            QDLD+G++ LL++FPQYR EAP+ +EGA+NALHIL  SNPI
Sbjct: 1127 QDLDAGMKSLLEVFPQYRGEAPACAEGAVNALHILLLSNPI 1167
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12207.1893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHP3_ECTSI5.810e-870.73Acetyl-CoA carboxylase n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5K608_9PHAE1.980e-768.29Acetyl-CoA carboxylase n=1 Tax=Ectocarpus sp. CCAP... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12207contigH-canaliculatus_F_contig12207:80..654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue2.5e-07
Seed eggNOG ortholog2880.D8LHP3
Preferred nameACACB
KEGG rclassRC00040,RC00253,RC00367
KEGG koko:K01946,ko:K11262
KEGG ReactionR00742,R04385,R04386
KEGG Pathwayko00061,ko00254,ko00620,ko00640,ko01100,ko01110,ko01212,ko04152,ko04910,ko04920,ko04922,ko04931,map00061,map00254,map00620,map00640,map01100,map01110,map01212,map04152,map04910,map04920,map04922,map04931
KEGG ModuleM00082
GOsGO:0000166,GO:0000902,GO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0001012,GO:0001067,GO:0001101,GO:0001650,GO:0001676,GO:0001894,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003824,GO:0003989,GO:0004075,GO:0005102,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005783,GO:0005789,GO:0005829,GO:0005856,GO:0005975,GO:0005976,GO:0005977,GO:0006073,GO:0006082,GO:0006084,GO:0006091,GO:0006109,GO:0006112,GO:0006139,GO:0006163,GO:0006164,GO:0006355,GO:0006606,GO:0006629,GO:0006631,GO:0006633,GO:0006637,GO:0006638,GO:0006639,GO:0006641,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006839,GO:0006853,GO:0006869,GO:0006886,GO:0006913,GO:0006996,GO:0006997,GO:0006998,GO:0008104,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009374,GO:0009605,GO:0009653,GO:0009719,GO:0009725,GO:0009743,GO:0009744,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0009991,GO:0010033,GO:0010256,GO:0010468,GO:0010556,GO:0010557,GO:0010565,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010675,GO:0010876,GO:0010883,GO:0010884,GO:0010906,GO:0012505,GO:0014070,GO:0015031,GO:0015629,GO:0015711,GO:0015718,GO:0015833,GO:0015849,GO:0015908,GO:0015909,GO:0015980,GO:0016020,GO:0016043,GO:0016053,GO:0016421,GO:0016874,GO:0016879,GO:0016885,GO:0017038,GO:0017076,GO:0018130,GO:0019216,GO:0019217,GO:0019218,GO:0019219,GO:0019222,GO:0019432,GO:0019438,GO:0019538,GO:0019637,GO:0019693,GO:0019752,GO:0019842,GO:0019867,GO:0019899,GO:0019900,GO:0019904,GO:0022607,GO:0030554,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031406,GO:0031667,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0031998,GO:0031999,GO:0032365,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0032810,GO:0032870,GO:0032879,GO:0032989,GO:0033036,GO:0033218,GO:0033293,GO:0033365,GO:0033865,GO:0033866,GO:0033875,GO:0033993,GO:0034030,GO:0034032,GO:0034033,GO:0034220,GO:0034285,GO:0034504,GO:0034613,GO:0034641,GO:0034654,GO:0034694,GO:0034695,GO:0035257,GO:0035337,GO:0035383,GO:0035384,GO:0035639,GO:0036094,GO:0040008,GO:0040029,GO:0042175,GO:0042221,GO:0042493,GO:0042592,GO:0042759,GO:0042802,GO:0042886,GO:0043086,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043565,GO:0043603,GO:0043604,GO:0043933,GO:0044042,GO:0044085,GO:0044092,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044432,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045017,GO:0045184,GO:0045540,GO:0045833,GO:0045893,GO:0045922,GO:0045927,GO:0045935,GO:0046320,GO:0046322,GO:0046390,GO:0046394,GO:0046460,GO:0046463,GO:0046483,GO:0046486,GO:0046620,GO:0046622,GO:0046890,GO:0046907,GO:0046942,GO:0046949,GO:0046966,GO:0048037,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048638,GO:0048639,GO:0048856,GO:0048869,GO:0048871,GO:0048878,GO:0050662,GO:0050692,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050810,GO:0050896,GO:0050994,GO:0050995,GO:0051094,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051240,GO:0051252,GO:0051254,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051427,GO:0051641,GO:0051649,GO:0051716,GO:0055085,GO:0055086,GO:0055088,GO:0055114,GO:0060249,GO:0060255,GO:0060420,GO:0060421,GO:0061024,GO:0062012,GO:0062014,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070542,GO:0070727,GO:0070887,GO:0071229,GO:0071310,GO:0071322,GO:0071324,GO:0071329,GO:0071379,GO:0071380,GO:0071396,GO:0071398,GO:0071495,GO:0071616,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072330,GO:0072521,GO:0072522,GO:0072594,GO:0080090,GO:0090181,GO:0090407,GO:0097009,GO:0097066,GO:0097159,GO:0097305,GO:0097306,GO:0097367,GO:0098588,GO:0098656,GO:0098805,GO:0098827,GO:0106118,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901568,GO:1901570,GO:1901576,GO:1901654,GO:1901655,GO:1901681,GO:1901700,GO:1901701,GO:1902001,GO:1902680,GO:1902930,GO:1903506,GO:1903508,GO:1903825,GO:1905039,GO:1905952,GO:1905954,GO:1990542,GO:1990837,GO:2000026,GO:2000112,GO:2001141,GO:2001293,GO:2001295
EggNOG free text desc.acetyl-CoA carboxylase
EggNOG OGsCOG0439@1,KOG0368@2759
EC2.1.3.15,6.3.4.14,6.4.1.2
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size576
Cds size243
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928935.0571845-UTR-H-canaliculatus_F_contig12207:79..4111622928935.0571845-UTR-H-canaliculatus_F_contig12207:79..411Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12207 80..411 +
1696845619.2102728-UTR-H-canaliculatus_F_contig12207:79..4111696845619.2102728-UTR-H-canaliculatus_F_contig12207:79..411Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12207 80..411 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928935.078017-CDS-H-canaliculatus_F_contig12207:411..6541622928935.078017-CDS-H-canaliculatus_F_contig12207:411..654Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12207 412..654 +
1696845619.2229748-CDS-H-canaliculatus_F_contig12207:411..6541696845619.2229748-CDS-H-canaliculatus_F_contig12207:411..654Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12207 412..654 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12207.1893.1prot_H-canaliculatus_F_contig12207.1893.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12207 412..654 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12207.1893.1

>prot_H-canaliculatus_F_contig12207.1893.1 ID=prot_H-canaliculatus_F_contig12207.1893.1|Name=mRNA_H-canaliculatus_F_contig12207.1893.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=81bp
MSLCLPFPDRIGQDLDSGVEFLLDLFPQYRREAPSYSEGAMNALHILPHS
NPIASRVLPFPSRKYRPLHDLAGSALPDEWF
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mRNA from alignment at H-canaliculatus_F_contig12207:80..654+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12207.1893.1 ID=mRNA_H-canaliculatus_F_contig12207.1893.1|Name=mRNA_H-canaliculatus_F_contig12207.1893.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=575bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12207:80..654+ (Hapterophycus canaliculatus Oshoro5f female)
ACGTCGAAGAAGACATGGGAATGGACGCCAACGAACACGATACACTCCTG
CAATCGTAGCGCCCGTACTCGATTGCACCGTGAGTAGAATGGTGCCGATC
AGGTTCGATAGTAGGCGCGGGAAAACGAGCAAGAACGATTGGTTGCTGGA
AGGAGACGAAAAGAGTACGTTGCGGGTCCTACGTTCCGGAATCGGCTGCT
CGCTCGACGATCGGTCGACAAGGTCGGAGAGGCCGATGGGCTCGACACTT
TGACATCCTGCACCACGCTCTCGCTAGGTCTCATCCATCCATCTCCGTCC
GCCCTCTTGCGTGCCCTCCTGCCTGTTTTCTGATGTCCCTTTGCCTTCCG
TTTCCCGATCGTATCGGGCAGGACCTCGACTCCGGCGTAGAGTTTCTCCT
GGATTTGTTCCCGCAGTACCGGCGAGAGGCGCCCTCTTACTCCGAGGGGG
CGATGAACGCCCTGCACATCTTGCCCCACTCCAACCCCATCGCCTCGAGG
GTGTTGCCGTTCCCCTCTCGAAAGTACCGTCCGCTTCATGATCTGGCGGG
CTCCGCTCTGCCCGACGAGTGGTTT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12207:80..654+

>mRNA_H-canaliculatus_F_contig12207.1893.1 ID=mRNA_H-canaliculatus_F_contig12207.1893.1|Name=mRNA_H-canaliculatus_F_contig12207.1893.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=486bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12207:80..654+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCCCTTTGCCTTCCGTTTCCCGATCGTATCGGGCAGGACCTCGACTC
CGGCGTAGAGTTTCTCCTGGATTTGTTCCCGCAGTACCGGCGAGAGGCGC
CCTCTTACTCCGAGGGGGCGATGAACGCCCTGCACATCTTGCCCCACTCC
AACCCCATCGCCTCGAGGGTGTTGCCGTTCCCCTCTCGAAAGTACCGTCC
GCTTCATGATCTGGCGGGCTCCGCTCTGCCCGACGAGTGGTTTATGTCCC
TTTGCCTTCCGTTTCCCGATCGTATCGGGCAGGACCTCGACTCCGGCGTA
GAGTTTCTCCTGGATTTGTTCCCGCAGTACCGGCGAGAGGCGCCCTCTTA
CTCCGAGGGGGCGATGAACGCCCTGCACATCTTGCCCCACTCCAACCCCA
TCGCCTCGAGGGTGTTGCCGTTCCCCTCTCGAAAGTACCGTCCGCTTCAT
GATCTGGCGGGCTCCGCTCTGCCCGACGAGTGGTTT
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