mRNA_H-canaliculatus_F_contig12177.1877.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12177.1877.1
Unique NamemRNA_H-canaliculatus_F_contig12177.1877.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12177.1877.1 vs. uniprot
Match: D8LRF1_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF1_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 2.190e-39
Identity = 91/222 (40.99%), Postives = 126/222 (56.76%), Query Frame = 1 
Query:    1 TDEVQPMDAGYGRLFKVYVAQELDA--SDATKVERWESNKLTASDRQILFTQWVGRAAEEFDRDSSYRRRLFEKTGLAMTADGSNDGLINLEGEDVLPISPAPADEEHPPGSS----------------GEGESDGEDPEVGNQF-----KRRRQGADEIANLDIDDDLADDEVPLPLQIPHGYALASSVPAALTAALLKQSIMLRLGVGWLSGVITRQAQA 597
            ++ +QP+DAG GR  KV V + +D     A  +ERWESN LTASDR++L TQWVG A EE D    YR RLFEK G+AMT DGS D  I LEG D         D     GSS                GEG+  GE  E G+       +  R   DE++ +D DD +  D+    ++IP G+ + +S PAAL ++LL++ +++ LG+GW  G+ITRQ+++
Sbjct:  481 SESLQPVDAGAGRFLKVEVGKRMDMWLEQADNIERWESNSLTASDRRVLITQWVGAAMEELDSREEYRFRLFEKCGMAMTVDGSGDDRITLEGLDKPYTFAGDGDSSDDEGSSETGNDGCGGGDDQTVEGEGDHSGEGVEDGDSSDEDTRETARDQMDELSLVDDDDSMESDDETHGMEIPDGFHIQASTPAALDSSLLQRGVLVGLGMGWFGGLITRQSRS 702
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12177.1877.1 vs. uniprot
Match: A0A6H5JFU2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFU2_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.080e-33
Identity = 86/221 (38.91%), Postives = 121/221 (54.75%), Query Frame = 1 
Query:    1 TDEVQPMDAGYGRLFKVYVAQELDA--SDATKVERWESNKLTASDRQILFTQWVGRAAEEFDRDSSYRRRLFEKTGLAMTADGSNDGLINLEGED---VLPISPAPADEEH--------PPGSSGEGESDGEDPEVGNQFKRRRQG------ADEIANLDIDDDL----ADDEVPLPLQIPHGYALASSVPAALTAALLKQSIMLRLGVGWLSGVITRQAQ 594
            TDEVQP+DAG GR  KV V ++LD     +  +ERWE+  LTASDR++L TQW+G A    +   +YR RLF+K G+AMT DGS D  I LEG D           +D+E         P G + EG+   E    G        G       DE+A LD DD +     +DE+   ++IP G+ +  + P AL   LL++ +++RLG+GW  G+I +Q+Q
Sbjct:   47 TDEVQPVDAGAGRFLKVEVGRQLDMWLEQSDNLERWETASLTASDRRVLITQWMGAAMARLNSQQAYRYRLFKKCGMAMTGDGSGDDRITLEGLDKPYTFADDEDSSDDEQGSENGNDEPEGRAEEGDGGRETLMEGVDSSDEDDGDISQPQTDELALLDDDDSMDPQDPEDEIQ-GMEIPAGFRIQEAKPVALDRLLLRRGVLVRLGMGWFGGLINQQSQ 266
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12177.1877.1 vs. uniprot
Match: A0A6H5KTV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTV9_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 7.660e-33
Identity = 83/213 (38.97%), Postives = 122/213 (57.28%), Query Frame = 1 
Query:    1 TDEVQPMDAGYGRLFKVYVAQELDA--SDATKVERWESNKLTASDRQILFTQWVGRAAEEFDRDSSYRRRLFEKTGLAMTADGSNDGLINLEGED---VLPISPAPADEEHPPGS-SGEGESDGEDPEVGNQFKRRRQGADEI-----ANLDIDDDL----ADDEVPLPLQIPHGYALASSVPAALTAALLKQSIMLRLGVGWLSGVITRQAQ 594
            TDEVQP+D G GR  KV V ++++     +  +ERWE+  LTASDR++L TQW+G A    +   +YR  LF+K G+AMT DGS D  I LEG D     P     +D+E   GS +G  E +G+  E     +   +G D       A LD DD +     +DE+   ++IP G+ +  + P AL   LL++ +++RLG+GW  G+IT+Q+Q
Sbjct:   47 TDEVQPVDTGAGRFLKVEVGRQMETWLEQSDNLERWETASLTASDRRVLITQWMGAAMARLNSQQAYRYLLFKKCGMAMTVDGSGDDRITLEGLDKPYTFPNDEDSSDDEQ--GSENGNDEPEGQAEEGDGGRETLMEGVDSSDEDDGALLDDDDSMDPQDPEDEIQ-GMEIPAGFRIQEAKPVALDRLLLRRGVLVRLGMGWFGGLITQQSQ 256
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12177.1877.1 vs. uniprot
Match: A0A6H5KLU8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLU8_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 1.210e-32
Identity = 86/221 (38.91%), Postives = 122/221 (55.20%), Query Frame = 1 
Query:    1 TDEVQPMDAGYGRLFKVYVAQELDA--SDATKVERWESNKLTASDRQILFTQWVGRAAEEFDRDSSYRRRLFEKTGLAMTADGSNDGLINLEGED---VLPISPAPADEEH--------PPGSSGEGES------DGEDPEVGNQFKRRRQGADEIANLDIDDDLA----DDEVPLPLQIPHGYALASSVPAALTAALLKQSIMLRLGVGWLSGVITRQAQ 594
            TDEVQP+DAG GR  KV V +++D        +ERWE+  LTASDR++L TQW+G A    D   +YR RLFEK G+AMT DGS D  I LEG D           +D+E         P G + EG+       +G D    +     +   DE+A LD DD +     +DE+   ++IP G+ +  + P AL   LL++ +++ LG+GW  G+IT+Q+Q
Sbjct:   36 TDEVQPVDAGAGRFPKVEVGRQMDMLLEQPDNLERWETASLTASDRRVLITQWMGAAMARLDSQQAYRYRLFEKCGMAMTVDGSGDDRITLEGLDKPYTFANDEDSSDDEQGSENGNDEPEGRAEEGDGGRETLMEGVDSSDEDDGDMSQPQTDELALLDDDDSMEPHDPEDEIQ-GMEIPSGFRIQEAKPVALDRLLLRRGVLVGLGMGWFGGLITQQSQ 255
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12177.1877.1 vs. uniprot
Match: A0A6H5K7A3_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7A3_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.270e-32
Identity = 87/221 (39.37%), Postives = 121/221 (54.75%), Query Frame = 1 
Query:    1 TDEVQPMDAGYGRLFKVYVAQELDA--SDATKVERWESNKLTASDRQILFTQWVGRAAEEFDRDSSYRRRLFEKTGLAMTADGSNDGLINLEGED---VLPISPAPADEEH--------PPGSSGEGESDGEDPEVGNQFKRRRQG------ADEIANLDIDDDL----ADDEVPLPLQIPHGYALASSVPAALTAALLKQSIMLRLGVGWLSGVITRQAQ 594
            TDEVQP+DAG GR  KV V +++D     +  +ERWE+  LTASDR++L TQW+G A    +   +YR RLFEK G+AMT DGS D  I LEG D           +D+E         P G + EG+   E    G        G       DE+A LD DD +     +DE+   ++IP G+ +  + P AL   LL++ ++ RLG+GW  G+IT+Q+Q
Sbjct:  479 TDEVQPVDAGAGRFLKVEVGRQMDIWLEQSDNLERWETASLTASDRRVLITQWMGAAMARLNSQQAYRYRLFEKCGMAMTVDGSGDDRITLEGLDKPYTFANDEDSSDDEQGSENGNDEPEGRAEEGDGGRETLMEGVDSSDEDDGDISQPQTDELAPLDDDDSMDPQDLEDEIK-GMEIPAGFRIQEAKPVALYRLLLRRGVLARLGMGWFGGLITQQSQ 698
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12177.1877.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.550e-32
Identity = 87/235 (37.02%), Postives = 120/235 (51.06%), Query Frame = 1 
Query:    1 TDEVQPMDAGYGRLFKVYVAQELDA--SDATKVERWESNKLTASDRQILFTQWVGRAAEEFDRDSSYRRRLFEKTGLAMTADGSNDGLINLEGEDVLPISPAPAD--------------EEHPPGSSGEG----------------------ESDGEDPEVGNQFKRRRQGADEIANLDIDDDLADDEVPLPLQIPHGYALASSVPAALTAALLKQSIMLRLGVGWLSGVITRQA 591
            TDE+QP+DAG GR  K  + ++LD+       +++WE   LTAS+R++L TQWV    E+ + D  YR RLFEKTG  MTADGS D  INLEG    P++   AD                  PG  G G                      ESDG+D          +Q  D +  L  DD L   E  L + IP G+ L +S P+AL  +L+K+ ++++LG+GW  GVI+R+A
Sbjct: 1698 TDELQPVDAGMGRRMKTGMGRQLDSWLEHGDNLQQWEDGSLTASERRVLLTQWVAEVIEKINADQQYRSRLFEKTGTGMTADGSGDERINLEGVSG-PLNFMDADVGGSSGEXXXXXXXXXXNPGEGGRGGGDLGLQLGGDSESEEDASSCDESDGDD---------EKQSEDPLTQLHDDDQLCAGEESLEMDIPDGFQLQASPPSALDQSLVKRGVLVKLGLGWFGGVISRRA 1922
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12177.1877.1 vs. uniprot
Match: A0A6H5JJC2_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJC2_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 6.460e-32
Identity = 85/222 (38.29%), Postives = 121/222 (54.50%), Query Frame = 1 
Query:    1 TDEVQPMDAGYGRLFKVYVAQELDA--SDATKVERWESNKLTASDRQILFTQWVGRAAEEFDRDSSYRRRLFEKTGLAMTADGSNDGLINLEGEDVLPISPAPADE------------EHPPGSSGEGESDGEDPEVGNQFKRRRQG------ADEIANLDIDDDL----ADDEVPLPLQIPHGYALASSVPAALTAALLKQSIMLRLGVGWLSGVITRQAQ 594
            TDEVQP+DAG GR  KV V +++D     +   ERWE+  LTASDR++L TQW+G A    +   +YR RLFEK G+AMT DGS D    LEG D  P + A  ++            + P G + EG+   E    G        G       DE+A LD  D +     +DE+   ++IP G+ +  + P AL   LL++ +++RLG+GW  G+IT+Q+Q
Sbjct:  104 TDEVQPVDAGAGRFLKVEVGRQMDIWLKQSDNFERWETASLTASDRRVLITQWMGAAMARLNSQQAYRYRLFEKCGMAMTVDGSGDDRTTLEGLDK-PYTFANDEDSSYDEQGSENGNDEPEGRAEEGDGGRETLMEGVDSSDEDDGDISQPQTDELALLDDGDSMDPQDPEDEIQ-GMEIPAGFRIQEANPVALDRLLLRRGVLVRLGMGWFGGLITQQSQ 323
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12177.1877.1 vs. uniprot
Match: A0A6H5JTC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC1_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 2.540e-31
Identity = 84/223 (37.67%), Postives = 122/223 (54.71%), Query Frame = 1 
Query:    1 TDEVQPMDAGYGRLFKVYVAQELDA--SDATKVERWESNKLTASDRQILFTQWVGRAAEEFDRDSSYRRRLFEKTGLAMTADGSNDGLINLEGED---VLPISPAPADEEH--------PPGSSGEGESDGEDPEVGNQFKRRRQG------ADEIANLDIDDDL----ADDEVPLPLQIPHGYA--LASSVPAALTAALLKQSIMLRLGVGWLSGVITRQAQ 594
            TDEVQP+DAG GR  KV V +++D     +  ++RWE+  LTASDR +L T+W+G A    +   +YR RLFEK G+AMT DGS D  I L+G D           +D+E         P G + EG+   E    G+       G       DE+A LD DD +     +DE+   ++IP G+   +  + P AL   LL++ +++RLG+GW  G+IT+Q+Q
Sbjct:   30 TDEVQPVDAGAGRFLKVEVGRQMDIWLEQSDNLKRWETASLTASDRPVLITRWMGAAMARLNSQQAYRYRLFEKCGMAMTVDGSGDDRITLKGLDKPCTFANDEDSSDDEQGSENGNDEPGGRAEEGDGGRETLMEGSDSSDEDDGDISQPQTDELALLDDDDSMDPQEPEDEIQ-GMEIPAGFRFRIQEAKPVALDRLLLRRGVLVRLGMGWFEGLITQQSQ 251
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12177.1877.1 vs. uniprot
Match: A0A6H5L9B9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9B9_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 8.810e-31
Identity = 87/225 (38.67%), Postives = 116/225 (51.56%), Query Frame = 1 
Query:    1 TDEVQPMDAGYGRLFKVYVAQELDA--SDATKVERWESNKLTASDRQILFTQWVGRAAEEFDRDSSYRRRLFEKTGLAMTADGSNDGLINLEG-------------------EDVLPISPAPADEEHPP----GSSGEGESDGEDPEVGNQFKRRRQGADEIANLDIDDDL----ADDEVPLPLQIPHGYALASSVPAALTAALLKQSIMLRLGVGWLSGVITRQ 588
            TDEVQP+DAG GR  KV V  E+D     +  +ERWE+  LTASDR++L TQW G A  + + +  YR RLFEK G+AMT DGS D  I  E                    E      P   DE +      G  G G SD +D  +       +   DE+A LD DD +    ++DE    ++IP G+ L  S PAAL   LL++ + +RLG+GW  G+I +Q
Sbjct:   37 TDEVQPVDAGAGRFLKVEVGNEMDKWLDQSDNIERWETASLTASDRRVLITQWTGAAMAKLNSNQGYRHRLFEKCGMAMTVDGSGDDRITFEAGRAWRALDTAMKTTTGREEEGAGRREPVVWDERNGANSGEGMEGAGYSDEDDDNMS------QSQTDELALLDEDDSMDPDDSEDETQ-GMEIPAGFHLQKSTPAALDRLLLQRGVFVRLGMGWFGGLIIQQ 254
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12177.1877.1 vs. uniprot
Match: A0A6H5K3M9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3M9_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.110e-30
Identity = 77/201 (38.31%), Postives = 106/201 (52.74%), Query Frame = 1 
Query:    1 TDEVQPMDAGYGRLFKVYVAQELDA--SDATKVERWESNKLTASDRQILFTQWVGRAAEEFDRDSSYRRRLFEKTGLAMTADGSNDGLINLEGEDVLPISPAPADEEHPPGSSGEGESDGEDPEVGNQFKRRRQGA-DEIANLDIDDDLADDEVPLPLQIPHGYALASSVPAALTAALLKQSIMLRLGVGWLSGVITRQAQ 594
            TDEVQP+DAG GR  KV V +++D     +  +ERWE+  LTASDR++L TQW+G      +   +YR RLFEK G+AMT DGS D  I LEG D  P + A              + D  D E G       Q   DEI  ++I               P G+ +  +   AL   LL++ +++RLG+GW  G+IT+Q+Q
Sbjct:   32 TDEVQPVDAGAGRFLKVEVGRKMDIWLEQSDNLERWETASLTASDRRVLITQWMGATMARLNSQQAYRYRLFEKCGMAMTVDGSGDDRITLEGLDK-PYTLA-------------NDQDSSDDEQGRWXSMDPQDPEDEIQGMEI---------------PAGFRIQEAKSVALGRLLLRRGVLVRLGMGWFGGLITQQSQ 203
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12177.1877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRF1_ECTSI2.190e-3940.99C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JFU2_9PHAE1.080e-3338.91Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTV9_9PHAE7.660e-3338.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLU8_9PHAE1.210e-3238.91Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K7A3_9PHAE1.270e-3239.37HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JH58_9PHAE1.550e-3237.02Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JJC2_9PHAE6.460e-3238.29Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTC1_9PHAE2.540e-3137.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L9B9_9PHAE8.810e-3138.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3M9_9PHAE1.110e-3038.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12177contigH-canaliculatus_F_contig12177:384..1308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.1
Seed ortholog evalue8.3e-33
Seed eggNOG ortholog2880.D8LRF1
EggNOG OGs2DCSR@1,2S5KN@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size597
Cds size579
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12177.1877.1prot_H-canaliculatus_F_contig12177.1877.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12177 402..1308 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928930.635565-UTR-H-canaliculatus_F_contig12177:383..4011622928930.635565-UTR-H-canaliculatus_F_contig12177:383..401Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12177 384..401 +
1696845617.0593283-UTR-H-canaliculatus_F_contig12177:383..4011696845617.0593283-UTR-H-canaliculatus_F_contig12177:383..401Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12177 384..401 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928930.6505523-CDS-H-canaliculatus_F_contig12177:401..4701622928930.6505523-CDS-H-canaliculatus_F_contig12177:401..470Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12177 402..470 +
1696845617.0695148-CDS-H-canaliculatus_F_contig12177:401..4701696845617.0695148-CDS-H-canaliculatus_F_contig12177:401..470Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12177 402..470 +
1622928930.671926-CDS-H-canaliculatus_F_contig12177:742..9281622928930.671926-CDS-H-canaliculatus_F_contig12177:742..928Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12177 743..928 +
1696845617.0783074-CDS-H-canaliculatus_F_contig12177:742..9281696845617.0783074-CDS-H-canaliculatus_F_contig12177:742..928Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12177 743..928 +
1622928930.6944232-CDS-H-canaliculatus_F_contig12177:984..13081622928930.6944232-CDS-H-canaliculatus_F_contig12177:984..1308Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12177 985..1308 +
1696845617.0895505-CDS-H-canaliculatus_F_contig12177:984..13081696845617.0895505-CDS-H-canaliculatus_F_contig12177:984..1308Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12177 985..1308 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12177.1877.1

>prot_H-canaliculatus_F_contig12177.1877.1 ID=prot_H-canaliculatus_F_contig12177.1877.1|Name=mRNA_H-canaliculatus_F_contig12177.1877.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=193bp
MDAGYGRLFKVYVAQELDASDATKVERWESNKLTASDRQILFTQWVGRAA
EEFDRDSSYRRRLFEKTGLAMTADGSNDGLINLEGEDVLPISPAPADEEH
PPGSSGEGESDGEDPEVGNQFKRRRQGADEIANLDIDDDLADDEVPLPLQ
IPHGYALASSVPAALTAALLKQSIMLRLGVGWLSGVITRQAQA
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mRNA from alignment at H-canaliculatus_F_contig12177:384..1308+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12177.1877.1 ID=mRNA_H-canaliculatus_F_contig12177.1877.1|Name=mRNA_H-canaliculatus_F_contig12177.1877.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=925bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12177:384..1308+ (Hapterophycus canaliculatus Oshoro5f female)
ACCGATGAGGTGCAGCCGATGGATGCTGGGTACGGGCGGCTCTTCAAAGT
CTACGTGGCGCAGGAGCTTGATGCGAGTGATGCTACGGTAGGGGGGTCGC
TTTTCCGAGCGAAAGCGATCACTTTGAAATTCATGACTTATCGTCGCTTC
TCGAAGCGATGACGCCCACTCTCGGGTAAAGAATGTGCGGAAATGGTTCG
TTCATGTTGCCGGAGGAAAGGGTGTAACTGGTTTTCAGGAGGAGGGCAGG
TGCGAAGGCCACAGCGTCCAGAAAGCTTACAGTCTGGTCCTGCTCAAAGT
GAGCCCACAAGAGCCCCCCCAACCGTAGCATCACTCATGCGTTTCTCCTG
GAAGGTGAGAAGGTAGAGCGATGGGAGTCCAACAAGCTGACCGCGTCTGA
TCGTCAAATCTTGTTCACGCAGTGGGTCGGCAGGGCTGCGGAAGAGTTCG
ACAGAGATAGTAGCTATCGCAGGCGCCTGTTTGAGAAAACAGGGCTAGCC
ATGACAGCAGACGGTAGCAACGACGGCCTCATCAACCTGGAAGGTGTACC
GCGATGGGGACCTACTCGTTCATGGACGTGGATACCACACCATAGCTGCA
GGAGGATGTGCTTCCTATCTCACCTGCTCCCGCTGACGAGGAACATCCGC
CGGGTTCAAGTGGCGAGGGCGAGAGCGACGGCGAGGATCCGGAGGTGGGC
AATCAGTTCAAGAGACGGCGTCAGGGTGCCGATGAGATCGCCAACTTGGA
CATCGACGACGATCTTGCCGATGACGAGGTGCCCCTGCCACTCCAGATCC
CTCATGGATATGCCCTTGCTAGCTCGGTGCCTGCGGCTCTCACCGCAGCT
TTATTGAAGCAATCGATCATGCTGCGACTTGGCGTGGGCTGGCTCAGCGG
GGTGATCACGCGACAGGCTCAAGCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12177:384..1308+

>mRNA_H-canaliculatus_F_contig12177.1877.1 ID=mRNA_H-canaliculatus_F_contig12177.1877.1|Name=mRNA_H-canaliculatus_F_contig12177.1877.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1158bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12177:384..1308+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGATGCTGGGTACGGGCGGCTCTTCAAAGTCTACGTGGCGCAGGAGCT
TGATGCGAGTGATGCTACGATGGATGCTGGGTACGGGCGGCTCTTCAAAG
TCTACGTGGCGCAGGAGCTTGATGCGAGTGATGCTACGAAGGTAGAGCGA
TGGGAGTCCAACAAGCTGACCGCGTCTGATCGTCAAATCTTGTTCACGCA
GTGGGTCGGCAGGGCTGCGGAAGAGTTCGACAGAGATAGTAGCTATCGCA
GGCGCCTGTTTGAGAAAACAGGGCTAGCCATGACAGCAGACGGTAGCAAC
GACGGCCTCATCAACCTGGAAGGTAAGGTAGAGCGATGGGAGTCCAACAA
GCTGACCGCGTCTGATCGTCAAATCTTGTTCACGCAGTGGGTCGGCAGGG
CTGCGGAAGAGTTCGACAGAGATAGTAGCTATCGCAGGCGCCTGTTTGAG
AAAACAGGGCTAGCCATGACAGCAGACGGTAGCAACGACGGCCTCATCAA
CCTGGAAGGTGAGGATGTGCTTCCTATCTCACCTGCTCCCGCTGACGAGG
AACATCCGCCGGGTTCAAGTGGCGAGGGCGAGAGCGACGGCGAGGATCCG
GAGGTGGGCAATCAGTTCAAGAGACGGCGTCAGGGTGCCGATGAGATCGC
CAACTTGGACATCGACGACGATCTTGCCGATGACGAGGTGCCCCTGCCAC
TCCAGATCCCTCATGGATATGCCCTTGCTAGCTCGGTGCCTGCGGCTCTC
ACCGCAGCTTTATTGAAGCAATCGATCATGCTGCGACTTGGCGTGGGCTG
GCTCAGCGGGGTGATCACGCGACAGGCTCAAGCTGAGGATGTGCTTCCTA
TCTCACCTGCTCCCGCTGACGAGGAACATCCGCCGGGTTCAAGTGGCGAG
GGCGAGAGCGACGGCGAGGATCCGGAGGTGGGCAATCAGTTCAAGAGACG
GCGTCAGGGTGCCGATGAGATCGCCAACTTGGACATCGACGACGATCTTG
CCGATGACGAGGTGCCCCTGCCACTCCAGATCCCTCATGGATATGCCCTT
GCTAGCTCGGTGCCTGCGGCTCTCACCGCAGCTTTATTGAAGCAATCGAT
CATGCTGCGACTTGGCGTGGGCTGGCTCAGCGGGGTGATCACGCGACAGG
CTCAAGCT
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