mRNA_H-canaliculatus_F_contig12174.1874.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12174.1874.1
Unique NamemRNA_H-canaliculatus_F_contig12174.1874.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig12174.1874.1 vs. uniprot
Match: A0A6H5KWA6_9PHAE (ERD protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWA6_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 3.540e-50
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 1
Query:    1 MTYACVAPVVIIPALMFFSMAQVVYRHQLLYVYVPTFESGGSFFPKMFRRWIFALFTAQATMVGMCLLKQGFKQAYSVMFLMVLTYVY 264
            MTYACVAPVVI+PALMFF +AQVVYRHQLLYVYVPTFESGGSFFPKMFRRWIFALFTAQATMVGMCLLKQGFKQAYSVMFLMVLTYVY
Sbjct:   13 MTYACVAPVVIVPALMFFFLAQVVYRHQLLYVYVPTFESGGSFFPKMFRRWIFALFTAQATMVGMCLLKQGFKQAYSVMFLMVLTYVY 100          
BLAST of mRNA_H-canaliculatus_F_contig12174.1874.1 vs. uniprot
Match: D7FQJ6_ECTSI (Early-responsive to dehydration protein-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQJ6_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 3.550e-45
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 1
Query:    1 MTYACVAPVVIIPALMFFSMAQVVYRHQLLYVYVPTFESGGSFFPKMFRRWIFALFTAQATMVGMCLLKQGFKQAYSVMFLMVLTYVY 264
            MTYACVAPVVIIPALMFF +AQVVYRHQLLYVYVPTFESGGSFFPKMFRRWIFALF AQATMVGMCLLKQGFKQAYSVMFLMVLTYVY
Sbjct: 1015 MTYACVAPVVIIPALMFFFLAQVVYRHQLLYVYVPTFESGGSFFPKMFRRWIFALFAAQATMVGMCLLKQGFKQAYSVMFLMVLTYVY 1102          
BLAST of mRNA_H-canaliculatus_F_contig12174.1874.1 vs. uniprot
Match: A0A836CHQ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHQ4_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.090e-31
Identity = 62/88 (70.45%), Postives = 76/88 (86.36%), Query Frame = 1
Query:    1 MTYACVAPVVIIPALMFFSMAQVVYRHQLLYVYVPTFESGGSFFPKMFRRWIFALFTAQATMVGMCLLKQGFKQAYSVMFLMVLTYVY 264
            MTYAC+APV+++P L+FF +AQVVYRHQLLYVYVP FESGG+FFP +FRR++FAL TAQATM+GM LLK G  Q Y++  LMV+TYVY
Sbjct:  797 MTYACIAPVILVPGLLFFGIAQVVYRHQLLYVYVPDFESGGAFFPLVFRRFVFALVTAQATMLGMFLLKNGLAQVYAMAILMVVTYVY 884          
BLAST of mRNA_H-canaliculatus_F_contig12174.1874.1 vs. uniprot
Match: F0Y5Y8_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5Y8_AURAN)

HSP 1 Score: 98.6 bits (244), Expect = 4.260e-22
Identity = 48/88 (54.55%), Postives = 65/88 (73.86%), Query Frame = 1
Query:    1 MTYACVAPVVIIPALMFFSMAQVVYRHQLLYVYVPTFESGGSFFPKMFRRWIFALFTAQATMVGMCLLKQGFKQAYSVMFLMVLTYVY 264
            MTY  ++P++++P L+FF  A VVYRHQLLYVY P FESGG  +P+++RR +F++F  Q TMVG+  LK  F Q Y V+ L VLTY+Y
Sbjct: 1012 MTYCVMSPIILVPGLLFFGWASVVYRHQLLYVYEPIFESGGLLWPRIYRRTLFSIFIMQLTMVGLFFLKHAFSQGYCVLALSVLTYLY 1099          
BLAST of mRNA_H-canaliculatus_F_contig12174.1874.1 vs. uniprot
Match: A0A7S2UV71_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV71_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.960e-21
Identity = 47/86 (54.65%), Postives = 65/86 (75.58%), Query Frame = 1
Query:    1 MTYACVAPVVIIPALMFFSMAQVVYRHQLLYVYVPTFESGGSFFPKMFRRWIFALFTAQATMVGMCLLKQGFKQAYSVMFLMVLTY 258
            MTYA +AP ++IP +MFF++ Q+V R+QLLY+YVPTFE+GG  F  +FRR IF+LF AQAT++G+ LLK  ++Q Y    L  +TY
Sbjct:   59 MTYANMAPFILIPGMMFFAVTQLVMRYQLLYIYVPTFETGGQMFEMIFRRIIFSLFLAQATLLGLFLLKGAYEQVYCTFPLFFVTY 144          
BLAST of mRNA_H-canaliculatus_F_contig12174.1874.1 vs. uniprot
Match: A0A7S3NIB5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NIB5_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 3.730e-21
Identity = 46/88 (52.27%), Postives = 68/88 (77.27%), Query Frame = 1
Query:    1 MTYACVAPVVIIPALMFFSMAQVVYRHQLLYVYVPTFESGGSFFPKMFRRWIFALFTAQATMVGMCLLKQGFKQAYSVMFLMVLTYVY 264
            MTYA +AP++++P L+FF +AQ+VYRHQLL+VY+P FESGG  +P+++RR +F+LF  Q TM G+  LK  +KQ Y+ + L V TY++
Sbjct:  728 MTYAVMAPIILLPGLLFFILAQLVYRHQLLFVYLPIFESGGLLWPRIYRRTLFSLFILQFTMTGLFFLKAVYKQGYACLALSVATYIF 815          
BLAST of mRNA_H-canaliculatus_F_contig12174.1874.1 vs. uniprot
Match: A0A835Z3W6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3W6_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.400e-20
Identity = 43/87 (49.43%), Postives = 68/87 (78.16%), Query Frame = 1
Query:    4 TYACVAPVVIIPALMFFSMAQVVYRHQLLYVYVPTFESGGSFFPKMFRRWIFALFTAQATMVGMCLLKQGFKQAYSVMFLMVLTYVY 264
            T+AC+ P +++ ++ ++  A + Y+HQ+LYVY P +E+GG+FFPK+FRR+IFA+FTAQATM G+ +LK  + QA +V+ LMV T+ +
Sbjct:  635 TFACINPFILVVSIPYYLAAHLTYKHQMLYVYEPVYETGGTFFPKVFRRFIFAIFTAQATMAGVLILKTAYYQAAAVVLLMVATWAF 721          
BLAST of mRNA_H-canaliculatus_F_contig12174.1874.1 vs. uniprot
Match: K0RUA1_THAOC (RSN1_7TM domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RUA1_THAOC)

HSP 1 Score: 87.4 bits (215), Expect = 1.710e-18
Identity = 42/86 (48.84%), Postives = 64/86 (74.42%), Query Frame = 1
Query:    7 YACVAPVVIIPALMFFSMAQVVYRHQLLYVYVPTFESGGSFFPKMFRRWIFALFTAQATMVGMCLLKQGFKQAYSVMFLMVLTYVY 264
            +A VAP+V+IP  +FF ++++V+ HQ LYVY   FE+GG F+PK+FRR++F LF +QAT+ G  +LK    +AY+ + LM+LTY +
Sbjct:   79 FAVVAPIVLIPCAVFFFLSRIVWTHQFLYVYESAFETGGLFWPKIFRRFVFGLFISQATITGQFILKDARHEAYATIVLMILTYAF 164          
BLAST of mRNA_H-canaliculatus_F_contig12174.1874.1 vs. uniprot
Match: A0A7S3ZXG7_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZXG7_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 3.500e-18
Identity = 43/88 (48.86%), Postives = 62/88 (70.45%), Query Frame = 1
Query:    1 MTYACVAPVVIIPALMFFSMAQVVYRHQLLYVYVPTFESGGSFFPKMFRRWIFALFTAQATMVGMCLLKQGFKQAYSVMFLMVLTYVY 264
            M Y  ++PVV++P L+FFS+  VVYRHQLL+VY P FESGG  +P+ +RR +F++F  Q TMVG+   K+ + Q Y  + L  +TY+Y
Sbjct:  664 MVYVVMSPVVLVPGLLFFSIGSVVYRHQLLFVYEPLFESGGLLWPRFYRRILFSVFLTQFTMVGLFFSKKAYMQGYLTLALSAVTYLY 751          
BLAST of mRNA_H-canaliculatus_F_contig12174.1874.1 vs. uniprot
Match: A0A6H5JKU1_9PHAE (ERD protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKU1_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 3.520e-18
Identity = 44/87 (50.57%), Postives = 64/87 (73.56%), Query Frame = 1
Query:    1 MTYACVAPVVIIPALMFFSMAQVVYRHQLLYVYVPTFESGGSFFPKMFRRWIFALFTAQATMVGMCLLKQGFKQAYSVMFLMVLTYV 261
            +TY+ V P +++  + +F    +VY+HQ+L+VY P +E+GG FFPK+FRR+IFAL  AQATMVG+ +LK  + QA  V  LM+LTY+
Sbjct:  793 LTYSIVNPFILVVGIPYFFACHLVYKHQMLFVYEPMYETGGVFFPKIFRRFIFALIIAQATMVGILILKVAYYQAGLVFVLMILTYI 879          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12174.1874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWA6_9PHAE3.540e-5096.59ERD protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FQJ6_ECTSI3.550e-4596.59Early-responsive to dehydration protein-related n=... [more]
A0A836CHQ4_9STRA1.090e-3170.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
F0Y5Y8_AURAN4.260e-2254.55Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2UV71_9STRA2.960e-2154.65Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3NIB5_9STRA3.730e-2152.27Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A835Z3W6_9STRA2.400e-2049.43Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K0RUA1_THAOC1.710e-1848.84RSN1_7TM domain-containing protein n=1 Tax=Thalass... [more]
A0A7S3ZXG7_9STRA3.500e-1848.86Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A6H5JKU1_9PHAE3.520e-1850.57ERD protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12174contigH-canaliculatus_F_contig12174:112..1298 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.9
Seed ortholog evalue2.1e-39
Seed eggNOG ortholog2880.D7FQJ6
EggNOG free text desc.ion transport
EggNOG OGsCOG5594@1,KOG1134@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons2
Model size264
Cds size264
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928930.4384317-CDS-H-canaliculatus_F_contig12174:111..2861622928930.4384317-CDS-H-canaliculatus_F_contig12174:111..286Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12174 112..286 -
1696845616.9866066-CDS-H-canaliculatus_F_contig12174:111..2861696845616.9866066-CDS-H-canaliculatus_F_contig12174:111..286Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12174 112..286 -
1622928930.4610765-CDS-H-canaliculatus_F_contig12174:1209..12981622928930.4610765-CDS-H-canaliculatus_F_contig12174:1209..1298Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12174 1210..1298 -
1696845617.0036714-CDS-H-canaliculatus_F_contig12174:1209..12981696845617.0036714-CDS-H-canaliculatus_F_contig12174:1209..1298Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12174 1210..1298 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12174.1874.1prot_H-canaliculatus_F_contig12174.1874.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12174 112..1298 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12174.1874.1

>prot_H-canaliculatus_F_contig12174.1874.1 ID=prot_H-canaliculatus_F_contig12174.1874.1|Name=mRNA_H-canaliculatus_F_contig12174.1874.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=88bp
MTYACVAPVVIIPALMFFSMAQVVYRHQLLYVYVPTFESGGSFFPKMFRR
WIFALFTAQATMVGMCLLKQGFKQAYSVMFLMVLTYVY
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mRNA from alignment at H-canaliculatus_F_contig12174:112..1298-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12174.1874.1 ID=mRNA_H-canaliculatus_F_contig12174.1874.1|Name=mRNA_H-canaliculatus_F_contig12174.1874.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1187bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12174:112..1298- (Hapterophycus canaliculatus Oshoro5f female)
ATGACGTACGCCTGCGTGGCACCGGTGGTGATCATCCCAGCCCTCATGTT CTTCTCGATGGCGCAAGTCGTGTACCGGCACCAGCTACTGTGAGGGCCTC TTCTGCTGATGGGGGGGGGTGCGGGGGTCTTGGCTTGGCGTCAACGTGTT TACCGTTGTCGTCGTCGTTGTTGGTGGTGGTGGTGATGGGGACGTCGTTG TCGGTACCAGCCTAGACAGATGTGGTGCTGTAACCGCTGTACATTGTTCG CGCGCGGGTCCTATTCTCCCTTGCTGTCTTTTTACACGAGTTTGTGTTGA AGAGAAGTAAGGTTTAGAGTCGGCGACACCGCAGCGAGACCGAAGGGATA CAACGTCATGAGCGACGCCTCGGCAGGCGTCTCAGGAGGCTTGTGTTGAA TTCCATGCAGTTAAGGTTCACTTCGTTGGACGGGATAAAAACATAGCTTG TGTTTCGTCCGATTCTGTGTATTCATACCTGCATCCCGTCTCAGAGTCAG CGGACCAATAATTCGCGGAAGGATCAAGCCGCGCAGTGGTAGCCAATACC GCAGTTATTCTCGTTGCTGACCCCTGGTCTCAGGGCAGAACCAACCAAGC AGCCAATCGCAACGCCCGGAAAGGGCGATGAGTACGACGGTGCCCCCCTC CCCCCCCCTCCCGAGTACGCGTTCTCTCCTGCCCTTGCCCCCTCTCCTCC TCTAGTCCTATCAACAATCCCAACAAGAAGAGAGAGCAGCAAGTAGGAGA TCGAATCAGTTCTCGGATGATTGGCAAACCCTGTGACCCAACGAACCCCT CGTCGTGTACCGCGTGAGTTGGGGTCTTGACCGGGAGTACAAGTACGTAC ACGCATGCAGGCTATTCACCCGGGCGAGAGCAAGATCAACGACGATGAGC GCTATTGATCCGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCCCCCTCTATCGTGCATTTCTGAAACTGTCGACCGCACGGCGG CGACGTTCGCAGGTACGTGTACGTGCCGACGTTCGAGAGCGGCGGAAGCT TCTTCCCGAAGATGTTCCGCAGGTGGATTTTTGCGCTCTTCACGGCCCAG GCGACCATGGTCGGGATGTGCCTGCTAAAGCAAGGATTCAAGCAGGCCTA CAGCGTCATGTTCCTCATGGTGCTGACCTACGTGTAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12174:112..1298-

>mRNA_H-canaliculatus_F_contig12174.1874.1 ID=mRNA_H-canaliculatus_F_contig12174.1874.1|Name=mRNA_H-canaliculatus_F_contig12174.1874.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=528bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12174:112..1298- (Hapterophycus canaliculatus Oshoro5f female)
ATGACGTACGCCTGCGTGGCACCGGTGGTGATCATCCCAGCCCTCATGTT
CTTCTCGATGGCGCAAGTCGTGTACCGGCACCAGCTACTATGACGTACGC
CTGCGTGGCACCGGTGGTGATCATCCCAGCCCTCATGTTCTTCTCGATGG
CGCAAGTCGTGTACCGGCACCAGCTACTGTACGTGTACGTGCCGACGTTC
GAGAGCGGCGGAAGCTTCTTCCCGAAGATGTTCCGCAGGTGGATTTTTGC
GCTCTTCACGGCCCAGGCGACCATGGTCGGGATGTGCCTGCTAAAGCAAG
GATTCAAGCAGGCCTACAGCGTCATGTTCCTCATGGTGCTGACCTACGTG
TACGTACGTGTACGTGCCGACGTTCGAGAGCGGCGGAAGCTTCTTCCCGA
AGATGTTCCGCAGGTGGATTTTTGCGCTCTTCACGGCCCAGGCGACCATG
GTCGGGATGTGCCTGCTAAAGCAAGGATTCAAGCAGGCCTACAGCGTCAT
GTTCCTCATGGTGCTGACCTACGTGTAC
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