mRNA_H-canaliculatus_F_contig12170.1873.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12170.1873.1
Unique NamemRNA_H-canaliculatus_F_contig12170.1873.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12170.1873.1 vs. uniprot
Match: D7G3W7_ECTSI (Vps54_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W7_ECTSI)

HSP 1 Score: 198 bits (503), Expect = 1.990e-59
Identity = 109/142 (76.76%), Postives = 123/142 (86.62%), Query Frame = 1 
Query:    1 QISNGRRWLQRSLTRRTGPVLQIVRNDRRRHRLRLVQAVTASCLEAAAAEEKVEGELAAGRFTQAVATAELLSETVSADERLSSLAVLGGVRERARSILPAVRKRAELAVSELCRTFSPEGYGGIVEAFLMLEDRGALGPLP 426
            QISNGRR LQRSL R TGPVL+++   RRR RLRLV+AVTASCL+A A E +VEG+LAAGRFTQAVATAELL+ETV+ DE+LSS AVLGGVRERA +IL  V+ RAELAVSELC+TFSPE YGGIVEAFL+LEDRGAL P P
Sbjct:   93 QISNGRRGLQRSLARSTGPVLRLIETGRRRDRLRLVEAVTASCLKAVAEEGRVEGDLAAGRFTQAVATAELLAETVAGDEQLSSAAVLGGVRERAENILATVKTRAELAVSELCQTFSPEAYGGIVEAFLLLEDRGALRPPP 234
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12170.1873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3W7_ECTSI1.990e-5976.76Vps54_N domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12170contigH-canaliculatus_F_contig12170:1498..3628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionVacuolar protein sorting-associated protein 54
Ec32 orthologEc-09_001680.1
Exons4
Model size654
Cds size654
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12170.1873.1prot_H-canaliculatus_F_contig12170.1873.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12170 1498..3628 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928930.3167527-CDS-H-canaliculatus_F_contig12170:1497..16661622928930.3167527-CDS-H-canaliculatus_F_contig12170:1497..1666Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12170 1498..1666 -
1696845616.9438174-CDS-H-canaliculatus_F_contig12170:1497..16661696845616.9438174-CDS-H-canaliculatus_F_contig12170:1497..1666Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12170 1498..1666 -
1622928930.333345-CDS-H-canaliculatus_F_contig12170:1753..18761622928930.333345-CDS-H-canaliculatus_F_contig12170:1753..1876Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12170 1754..1876 -
1696845616.955057-CDS-H-canaliculatus_F_contig12170:1753..18761696845616.955057-CDS-H-canaliculatus_F_contig12170:1753..1876Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12170 1754..1876 -
1622928930.3796577-CDS-H-canaliculatus_F_contig12170:2442..25961622928930.3796577-CDS-H-canaliculatus_F_contig12170:2442..2596Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12170 2443..2596 -
1696845616.9634547-CDS-H-canaliculatus_F_contig12170:2442..25961696845616.9634547-CDS-H-canaliculatus_F_contig12170:2442..2596Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12170 2443..2596 -
1622928930.395324-CDS-H-canaliculatus_F_contig12170:3420..36281622928930.395324-CDS-H-canaliculatus_F_contig12170:3420..3628Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12170 3421..3628 -
1696845616.9724257-CDS-H-canaliculatus_F_contig12170:3420..36281696845616.9724257-CDS-H-canaliculatus_F_contig12170:3420..3628Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12170 3421..3628 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12170.1873.1

>prot_H-canaliculatus_F_contig12170.1873.1 ID=prot_H-canaliculatus_F_contig12170.1873.1|Name=mRNA_H-canaliculatus_F_contig12170.1873.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=218bp
QISNGRRWLQRSLTRRTGPVLQIVRNDRRRHRLRLVQAVTASCLEAAAAE
EKVEGELAAGRFTQAVATAELLSETVSADERLSSLAVLGGVRERARSILP
AVRKRAELAVSELCRTFSPEGYGGIVEAFLMLEDRGALGPLPPPPAPPPP
PHSTAGATGSVHGGGAGEVADAGSGDAAATAAAGGAAAAGEGGRIEGTDD
EAPRRQQRWISEVRGGHD
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mRNA from alignment at H-canaliculatus_F_contig12170:1498..3628-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12170.1873.1 ID=mRNA_H-canaliculatus_F_contig12170.1873.1|Name=mRNA_H-canaliculatus_F_contig12170.1873.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2131bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12170:1498..3628- (Hapterophycus canaliculatus Oshoro5f female)
CAGATATCCAACGGGCGGAGGTGGCTGCAGAGAAGCCTCACCCGCCGCAC
GGGTCCCGTCCTCCAGATCGTGCGGAACGACCGGCGGAGGCACCGGCTGC
GGCTGGTGCAGGCGGTCACGGCGTCCTGCCTGGAGGCGGCGGCGGCGGAG
GAGAAGGTGGAGGGAGAGCTGGCAGCGGGGAGGTTCACGCAGGCCGTCGC
CACCGCAGGTTTGGTTGGATCTTTTGCTTCGGCGTGAGGGAGGACGGGGG
CCCCGGGGTGAAACTAGCATGGTAGTGGTGGTGTGTAAGAACGAGCGGGC
GTGTTCGCTGTTGCTGCTGGGGCGCCTATGTCGCCCGATTCGGCCGCAGC
AATTTCAGAGCACGCGTTGAGCCTCCCCGAGAGAGCTGATTGAGACAGCG
ATTGATCGAGGCTTTCGTGGCGACCGGCACAGGGGGGTACCGCGGTCGTT
CAGGGTATCCCGCCGTGGGCACCCGGCATTTTTTTTCCTTTGGTCTTTTC
TTGCGAGGTTTGGAAAGGGCCGACGTGCGCAAAGGCCATGACCAGCGCGG
GCCGAATTCCTGCTCGGCGGGAGTAGACTGGGTTGGGTGAGGGTGACAGC
TGTTTGGCTCGTTATGCTTCCGATGAGCATGTCTGGAAACAAAAAAAAAA
ACACGGCGCTTGCCCGCCCCGCCGGCAACGGCAAGCCTGCTGTCGGCACG
AACGTTCCCGGAACGGGGGGGGGACGGCGGCTGCTTGCTGGGTTCAGGTA
ACGAGCCCAACTCAACAGTACTTGTTTTTCTTTTATGAACACGACTTCGT
TGTTCTTGCATCCACAAGTCGTGCCGGTACGCCGATGACCGTCAACGTTG
TCGTTGAGGGCGCGTGTGGTGAGAGAGATGGACAAAGCCACCCGGAACCC
ACGCCCTTCCCTTTCGTCGCTGCTGCTGCCGCCGCCGCCGCCGCTGCTGC
TGCCGCTGCGTCGCTGCGCCCCCCGCCCTTGCACCCGGTCTGCCGGTGGC
TGCTGTGCCCCCGCGCCCGCGCGTGGATCCAGAGCTCCTGTCGGAGACCG
TGTCCGCAGACGAGCGGCTGTCGAGCCTGGCCGTGCTCGGAGGGGTGAGG
GAAAGGGCGAGGTCCATCCTGCCCGCCGTCAGGAAGAGGGCGGAGCTCGC
CGTCTCCGAGCTGTGTCGGACGTTTTCTCCGGAAGGGTGAGGCCGTGTTT
CTCTCGCTCGTTTTCCGCCCGTTTCGTTTTGTTTTGTTTTCTCCCGTTTT
GTTTTGTCTGTCCTCTCTCGCTGCCGCTTCTCCCCCCCTCGGGCGAAGCC
GAGATACTTCCCACTACTCCCGTCGATGGCTTCGAAAGAGCGGCAGGTAG
GCAAGCGCCCGAGTCGTCTGCTGCGGTAGTCGTGCCCCATGGTCGCGCAT
GGTGAGTCAAAGCTTCAAAATCGCCTGGCGGCGGCGGCGGCGGGGGCGGC
GGCGGCGGGGACGGCGGCGGCGGGGCTAGCGGCGGCTGACATAATCCGTG
CTGTTGGTGGTGCCAGCGACGATGGTGCATTGTTGCGCTTGCTCCCCACG
GCGGTGGTGGGAGCGTCGGCCTCTGGTGGACGGGTGCCGGAATGGTGTCG
GTGCCGCTGCAGAGCCGAAAATGTCTGCTGTAGCGAGTGCGACGCCGTGG
CGGTGGCGGTGGTGGCGGTGACGGCGGCGGTGATGACCCCTGCTCATGCC
CTGCTGCTCCGGCTCCCGATGCCACGTTTTGCCGAACCCTGGCCGTCGAC
AGGTACGGCGGCATCGTGGAGGCGTTCCTCATGCTCGAGGACAGGGGAGC
CCTGGGCCCTCTCCCGCCACCCCCCGCCCCGCCCCCCCCTCCTCACAGCA
CAGCCGGGGCGACGGGATCTGTCCAGTACGGGGACGGAGCGAGAATCGGC
CAGGGCGGCGACGAGGACCCTCTTTCGTCGCCAGGGGTGACCCGAGCGGG
AGCACGAAGCAGCGGCGGTGGTGCGGGTGAGGTTGCAGACGCCGGTTCCG
GCGATGCTGCTGCTACTGCTGCTGCTGGGGGAGCCGCAGCTGCGGGCGAG
GGGGGTAGGATCGAAGGAACGGACGACGAGGCGCCACGGCGGCAACAACG
GTGGATCTCGGAGGTGCGCGGTGGTCATGAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12170:1498..3628-

>mRNA_H-canaliculatus_F_contig12170.1873.1 ID=mRNA_H-canaliculatus_F_contig12170.1873.1|Name=mRNA_H-canaliculatus_F_contig12170.1873.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1308bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12170:1498..3628- (Hapterophycus canaliculatus Oshoro5f female)
CAGATATCCAACGGGCGGAGGTGGCTGCAGAGAAGCCTCACCCGCCGCAC
GGGTCCCGTCCTCCAGATCGTGCGGAACGACCGGCGGAGGCACCGGCTGC
GGCTGGTGCAGGCGGTCACGGCGTCCTGCCTGGAGGCGGCGGCGGCGGAG
GAGAAGGTGGAGGGAGAGCTGGCAGCGGGGAGGTTCACGCAGGCCGTCGC
CACCGCAGCAGATATCCAACGGGCGGAGGTGGCTGCAGAGAAGCCTCACC
CGCCGCACGGGTCCCGTCCTCCAGATCGTGCGGAACGACCGGCGGAGGCA
CCGGCTGCGGCTGGTGCAGGCGGTCACGGCGTCCTGCCTGGAGGCGGCGG
CGGCGGAGGAGAAGGTGGAGGGAGAGCTGGCAGCGGGGAGGTTCACGCAG
GCCGTCGCCACCGCAGAGCTCCTGTCGGAGACCGTGTCCGCAGACGAGCG
GCTGTCGAGCCTGGCCGTGCTCGGAGGGGTGAGGGAAAGGGCGAGGTCCA
TCCTGCCCGCCGTCAGGAAGAGGGCGGAGCTCGCCGTCTCCGAGCTGTGT
CGGACGTTTTCTCCGGAAGGAGCTCCTGTCGGAGACCGTGTCCGCAGACG
AGCGGCTGTCGAGCCTGGCCGTGCTCGGAGGGGTGAGGGAAAGGGCGAGG
TCCATCCTGCCCGCCGTCAGGAAGAGGGCGGAGCTCGCCGTCTCCGAGCT
GTGTCGGACGTTTTCTCCGGAAGGGTACGGCGGCATCGTGGAGGCGTTCC
TCATGCTCGAGGACAGGGGAGCCCTGGGCCCTCTCCCGCCACCCCCCGCC
CCGCCCCCCCCTCCTCACAGCACAGCCGGGGCGACGGGATCTGTCCAGTA
CGGCGGCATCGTGGAGGCGTTCCTCATGCTCGAGGACAGGGGAGCCCTGG
GCCCTCTCCCGCCACCCCCCGCCCCGCCCCCCCCTCCTCACAGCACAGCC
GGGGCGACGGGATCTGTCCACGGCGGTGGTGCGGGTGAGGTTGCAGACGC
CGGTTCCGGCGATGCTGCTGCTACTGCTGCTGCTGGGGGAGCCGCAGCTG
CGGGCGAGGGGGGTAGGATCGAAGGAACGGACGACGAGGCGCCACGGCGG
CAACAACGGTGGATCTCGGAGGTGCGCGGTGGTCATGACCGGCGGTGGTG
CGGGTGAGGTTGCAGACGCCGGTTCCGGCGATGCTGCTGCTACTGCTGCT
GCTGGGGGAGCCGCAGCTGCGGGCGAGGGGGGTAGGATCGAAGGAACGGA
CGACGAGGCGCCACGGCGGCAACAACGGTGGATCTCGGAGGTGCGCGGTG
GTCATGAC
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