mRNA_H-canaliculatus_F_contig12162.1867.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12162.1867.1
Unique NamemRNA_H-canaliculatus_F_contig12162.1867.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12162.1867.1 vs. uniprot
Match: A0A6H5L3B9_9PHAE (GRIP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L3B9_9PHAE)

HSP 1 Score: 291 bits (744), Expect = 1.440e-80
Identity = 184/251 (73.31%), Postives = 208/251 (82.87%), Query Frame = 2 
Query:  386 QMRAQSKRAESELEEARRKTTRLEAEKAVLEERVEVEGAERVTVVASVSHERDFLCWHITLFFQQVDRLEQELSELRHLHEAQATAAAARAQTTGVLEEYRTRAQQALKRANEMTSQTASENKRLQAKMSNLFAEVAQQRPLWEQAKQREQIYRAEVAELKAQTASKATELEVVARAMVALEARLAEEEEGKRNAHISVMRLEAQGKSLKQELQRQHKALSVAQDHEANLQTRLADQEAVLRAMESDQRGK 1138
            Q+RAQS R ESELEEAR   TR+EAEKAVLEERVEVEGAERVTVVASVS ERDFL          VDRLEQE+ ELR   EAQATAAAARAQTTGVLEEYRTRAQQALKRANE+TSQTASENKRL+A+M  L  EVAQQRPLWEQ+KQ E+++RAEVAELK + A++ATEL  +A A  ALEA++ E+EE +R+AH SVMRLEAQGKSLKQELQRQ KAL+ AQ++E  LQTRLADQEA L+A E+ QR K
Sbjct:  551 QVRAQSIRIESELEEAREHATRIEAEKAVLEERVEVEGAERVTVVASVSQERDFLLRQAIA----VDRLEQEVVELRRSQEAQATAAAARAQTTGVLEEYRTRAQQALKRANEITSQTASENKRLKAEMRKLSDEVAQQRPLWEQSKQLEEVHRAEVAELKEKIANQATELGNMAAAAAALEAQVLEKEEERRDAHTSVMRLEAQGKSLKQELQRQQKALAAAQENEVTLQTRLADQEAALQAAENRQRRK 797
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12162.1867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L3B9_9PHAE1.440e-8073.31GRIP domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12162contigH-canaliculatus_F_contig12162:204..3813 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionGRIP
Ec32 orthologEc-01_003650.1
Hectar predicted targeting categoryother localisation
Exons6
Model size2365
Cds size780
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928929.4353523-UTR-H-canaliculatus_F_contig12162:203..3351622928929.4353523-UTR-H-canaliculatus_F_contig12162:203..335Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12162 204..335 +
1696845616.4449403-UTR-H-canaliculatus_F_contig12162:203..3351696845616.4449403-UTR-H-canaliculatus_F_contig12162:203..335Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12162 204..335 +
1622928929.5449069-UTR-H-canaliculatus_F_contig12162:2360..38131622928929.5449069-UTR-H-canaliculatus_F_contig12162:2360..3813Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12162 2361..3813 +
1696845616.4973288-UTR-H-canaliculatus_F_contig12162:2360..38131696845616.4973288-UTR-H-canaliculatus_F_contig12162:2360..3813Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12162 2361..3813 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928929.4544876-CDS-H-canaliculatus_F_contig12162:591..7521622928929.4544876-CDS-H-canaliculatus_F_contig12162:591..752Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12162 592..752 +
1696845616.4550035-CDS-H-canaliculatus_F_contig12162:591..7521696845616.4550035-CDS-H-canaliculatus_F_contig12162:591..752Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12162 592..752 +
1622928929.4785233-CDS-H-canaliculatus_F_contig12162:1072..12861622928929.4785233-CDS-H-canaliculatus_F_contig12162:1072..1286Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12162 1073..1286 +
1696845616.4633737-CDS-H-canaliculatus_F_contig12162:1072..12861696845616.4633737-CDS-H-canaliculatus_F_contig12162:1072..1286Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12162 1073..1286 +
1622928929.493816-CDS-H-canaliculatus_F_contig12162:1487..15861622928929.493816-CDS-H-canaliculatus_F_contig12162:1487..1586Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12162 1488..1586 +
1696845616.4735005-CDS-H-canaliculatus_F_contig12162:1487..15861696845616.4735005-CDS-H-canaliculatus_F_contig12162:1487..1586Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12162 1488..1586 +
1622928929.5091662-CDS-H-canaliculatus_F_contig12162:1859..19971622928929.5091662-CDS-H-canaliculatus_F_contig12162:1859..1997Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12162 1860..1997 +
1696845616.4813788-CDS-H-canaliculatus_F_contig12162:1859..19971696845616.4813788-CDS-H-canaliculatus_F_contig12162:1859..1997Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12162 1860..1997 +
1622928929.5271864-CDS-H-canaliculatus_F_contig12162:2192..23601622928929.5271864-CDS-H-canaliculatus_F_contig12162:2192..2360Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12162 2193..2360 +
1696845616.4893308-CDS-H-canaliculatus_F_contig12162:2192..23601696845616.4893308-CDS-H-canaliculatus_F_contig12162:2192..2360Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12162 2193..2360 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12162.1867.1prot_H-canaliculatus_F_contig12162.1867.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12162 592..2360 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12162.1867.1

>prot_H-canaliculatus_F_contig12162.1867.1 ID=prot_H-canaliculatus_F_contig12162.1867.1|Name=mRNA_H-canaliculatus_F_contig12162.1867.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=260bp
MRAQSKRAESELEEARRKTTRLEAEKAVLEERVEVEGAERVTVVASVSHE
RDFLCWHITLFFQQVDRLEQELSELRHLHEAQATAAAARAQTTGVLEEYR
TRAQQALKRANEMTSQTASENKRLQAKMSNLFAEVAQQRPLWEQAKQREQ
IYRAEVAELKAQTASKATELEVVARAMVALEARLAEEEEGKRNAHISVMR
LEAQGKSLKQELQRQHKALSVAQDHEANLQTRLADQEAVLRAMESDQRGK
SVSSLVWLS*
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mRNA from alignment at H-canaliculatus_F_contig12162:204..3813+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12162.1867.1 ID=mRNA_H-canaliculatus_F_contig12162.1867.1|Name=mRNA_H-canaliculatus_F_contig12162.1867.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3610bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12162:204..3813+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGAGCGCGAGAGGGAGCTGAGTAAACTGAAGGATGACTTTTTGACCGT
CAAAAAGAACACGGGCGAAGCAACTGACCAGAAAAACACCTGGGCCACCA
AGTACGAGGCTCTGGAGCGAAATTTCAAGCAGGTGAATGAGCGTACGTTC
GGCCCTCTCGCTCATCGGGTAATGACTCGCTTATGGTTACATGCGTATCG
GCAATCTCCAGGTCTCGAGATGCCGCATAGGTGTCCGCAGAGGTGTAGAA
TGTGGTTTCTTCCGCAATACAAGCTCAGACGGGTGCCGTCACGATCTGGC
AGCCGCCTGTTGGCTTCTCAGGTTTTCATGGGCACGAGGGCCAACCATGG
TTCGACCTTGTTGTGTTCGTCCAAATTCCCCTCCACAGATGCGCGCACAA
AGCAAGAGGGCAGAGTCTGAGCTGGAGGAAGCTCGCCGGAAAACCACCCG
CCTCGAGGCCGAAAAGGCAGTACTAGAAGAACGAGTGGAAGTGGAAGGAG
CAGAACGCGTCACGGTTGTGGCATCGGTTTCTCACGAGCGCGATTTCCTG
TTGAGGCAGGCAAGCATTTCGACTGAAATATAGTGTGTGGACAACGAGGT
TTCCACCCTGGTCTCCAATTGTGAGCGCCAATGGTTGGTAGGCATCAACA
ATTCTGACGCATCCGCTCCGGCTGCAACTTCGTTGCCTCCTCTCGTGTTG
CCGGACAAGGTCCTACGGACTTCAGTAGCGACCGTTCGGAACATGTGACG
GATAATTTAGTTCCCCGCCTGTTTGAGTCGCAGCTAATGGTGGTGTTTTT
CGTTTTTCTACTCGAGCGGTACGGTTGGCACCGCCCCAATGACGCCATAC
GAAGGATCTTACTGGCCAGCTGTTGGCATATCACCTTGTTCTTTCAACAG
GTAGATCGCTTGGAGCAGGAGTTGTCAGAGCTTCGACATTTGCATGAAGC
ACAAGCTACTGCTGCAGCAGCGCGGGCACAAACAACAGGCGTGTTGGAAG
AATACCGGACGAGAGCCCAGCAAGCACTAAAGCGTGCCAACGAGATGACC
AGCCAAACAGCATCTGAAAACAAACGCCTCCAGGTAAGTTGATTCATGTG
CCTCGCTATTGTGATGGGTCGCCTGTCTGAACCCGTGCCTTTGTCGTTTG
GTCGTTGCCCTGCCGGGCGAGTGCAGCTTACCGTTCTTGTTCAACTCTTT
TTTTAATTATCCAAGCGTGTGGCAGACATGCTGGCCGGCCTAACGTTGCA
ACGCTCGTGTCTTTCGTCACCGGCTCGAAAACAGGCGAAGATGAGCAATC
TTTTTGCTGAGGTGGCTCAGCAGCGTCCGCTATGGGAACAAGCGAAGCAG
CGGGAGCAGATTTACCGCGCAGAAGTTGCCGAGGTGAATCAATTGATTGT
TCGGGTGTGAGAAATCGTTATCCGCCTCGTGTCCCTTTCGCTCTTGGAGC
TTCCTCCAAAATGCAAGCATCTTCCGCAGTAAAATGCTGCATGCAGGCTT
CATGGACCTGCCGTCCATCTCGTTGTGTAGAAAAGCTGGATATCCATTCA
GAAAAAGGAAATATCAAAATTCTTGTGAGAATTACTCTGCTTCCGCTGTC
AGACTAAGACGTTCCGTTATGTACGTCCTCACGTGTTGACGTGTGGCTAC
TTTCAGCTCAAGGCGCAAACAGCAAGCAAAGCAACTGAGCTTGAGGTCGT
GGCGAGGGCGATGGTGGCGTTGGAAGCACGGCTAGCGGAGGAAGAAGAAG
GGAAAAGGAATGCGCACATCTCTGTCATGCGACTGGAAGCCCAGGTGACG
AGCAGCGTCACTCTTGTCATCCTTTCATCTGCTTCAGAGCTCGTACAACT
GAGCGACTATCGCTTTCAACACATTGACAGCTGTAGAGCATGACCTATTG
GTTTCGTTTGTTTTCCAAGAAGAACTAAGTGGAGGCGCGTCTCGTGTTCG
TGTGGGGTCTGTGCTTTCTGCTGGTTTGCTTTTCGACAGGGCAAAAGCCT
AAAACAGGAGTTGCAGCGGCAGCACAAAGCACTCTCCGTGGCACAAGACC
ACGAAGCCAACCTGCAAACCCGGTTGGCGGACCAGGAGGCCGTGCTACGA
GCCATGGAAAGCGATCAGCGTGGAAAATCTGTGAGTTCTCTTGTTTGGTT
ATCGTAGGCCTTCCAGAGCGAATCACGTACACTCTCCACCAATGATGTGT
TCGACCTTGTGCTTTGGATTGAGACATCGGTAGATATACTCCGTATAAGT
AGTGTTTTGTACTTCCAAGTTTGGAGGGCTAAGCGTGCAGCATTCGCGAT
CCGAGCTCGCCGAGGGCATCAAGAGCTGTTTTTTCAGCTTTCCTTCGCTC
TTGAACCTCCCAATGCCGCAAGTCTTGTGAGAACCCGCGGCCGCGGACAT
CGTGCAAAACGCGCGCGCCTCGCAATCTCGCGCGCGCCCGCGGCGCCTTC
CGCCAAAGAGCGCGTTTTTCGCTTACTGTTTAGCCGGTTGTGTGTTGCCG
TTGCTTATACATCACCGCTGATGTACATCGGCGCTATTCGCCGACCCGGA
GTTCACCCGCTTAGGGACGTCGTTAACGAGGTTCGGAAAATCATCATTGA
ATCCCCAAAATATCATGATCATAAATGTTGTGTTAAAAAGCACGTTACCA
AGTTTACGAGTATCACATTCATCACCACATGGGGGACTTTCCGAACTGGC
AGGGTTACATCACCTTGATGTGGACCCTCGGGGCCCCCAAGGCCGTTGGC
ATGTCCGTCGGGAGGAAAGGTTCAGGTGTCCGGCAAAATCTCTTCACACA
GATTAATAAATGCCATGCGTGTGAAGGCCGCCCCCTGGAGCTGTATGATG
TGGTTGTCCTCTGAGTCCCAACTTTTCAAACGGCAGGGCTGCGGCCGTCG
CGTGAAAAATCGATCGAAAGTGCAACGTGAATTCGAGAGAGGAGCCGCCT
GCTGTCGTTGGGACATTTGGCGCTGTGTTTTGAAAAGTTCAAGTTGAGTT
TTCCGGTGACAACTTTTGAAACCAAGGGGGGAGAGCCGTGACAGGGCTGC
TCCTCGAAGCAGTGTCTGTCCACCTGTTGCGATCGTTGTAGAACATCGGG
TTTCTGACGCCTTGTGAAAAAAAGTTGCAACTCCTTGTACCCATGGCGCG
ACGCATGATGCAAATATGGAGTCTTCGCTGATTGTGGACAACTTTTCCGA
CTAGGAAAAGATCGACAACGTAATTCGTATGTCGCCGAAACAACGACCGT
CCACCCTGATTAGGGGCCTCCCCAAGAGGGGAAGGTGTGAACACCAACCG
ATGACCATCCCCACAGGTCCTCACGCGTCCACCTTGTCGTGTGGATGATG
ACATGTGTGTATGCCCTCGGCTGGACGAAGTCCAGCAAATCTCACCGCAC
CTCCCGGCCTCCGTCCCGGCTTCCCTCCCTGGAGAATGCCTTCCAGCACC
ATCACTCCTCAATAATGATACAATGATGGCGCAGAATGCTCTTTTCCATG
TGCATGATAAATCATTATTCGCCTTCAGATGAAAATCGATCGGCCAATCA
GGCAATCAGGAATCGATATCAGAAATGATTTTTCCAATCATGATTTTACG
AACTTCAGTA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12162:204..3813+

>mRNA_H-canaliculatus_F_contig12162.1867.1 ID=mRNA_H-canaliculatus_F_contig12162.1867.1|Name=mRNA_H-canaliculatus_F_contig12162.1867.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1560bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12162:204..3813+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCGCGCACAAAGCAAGAGGGCAGAGTCTGAGCTGGAGGAAGCTCGCCG
GAAAACCACCCGCCTCGAGGCCGAAAAGGCAGTACTAGAAGAACGAGTGG
AAGTGGAAGGAGCAGAACGCGTCACGGTTGTGGCATCGGTTTCTCACGAG
CGCGATTTCCTATGCGCGCACAAAGCAAGAGGGCAGAGTCTGAGCTGGAG
GAAGCTCGCCGGAAAACCACCCGCCTCGAGGCCGAAAAGGCAGTACTAGA
AGAACGAGTGGAAGTGGAAGGAGCAGAACGCGTCACGGTTGTGGCATCGG
TTTCTCACGAGCGCGATTTCCTCTGTTGGCATATCACCTTGTTCTTTCAA
CAGGTAGATCGCTTGGAGCAGGAGTTGTCAGAGCTTCGACATTTGCATGA
AGCACAAGCTACTGCTGCAGCAGCGCGGGCACAAACAACAGGCGTGTTGG
AAGAATACCGGACGAGAGCCCAGCAAGCACTAAAGCGTGCCAACGAGATG
ACCAGCCAAACAGCATCTGAAAACAAACGCCTCCAGCTGTTGGCATATCA
CCTTGTTCTTTCAACAGGTAGATCGCTTGGAGCAGGAGTTGTCAGAGCTT
CGACATTTGCATGAAGCACAAGCTACTGCTGCAGCAGCGCGGGCACAAAC
AACAGGCGTGTTGGAAGAATACCGGACGAGAGCCCAGCAAGCACTAAAGC
GTGCCAACGAGATGACCAGCCAAACAGCATCTGAAAACAAACGCCTCCAG
GCGAAGATGAGCAATCTTTTTGCTGAGGTGGCTCAGCAGCGTCCGCTATG
GGAACAAGCGAAGCAGCGGGAGCAGATTTACCGCGCAGAAGTTGCCGAGG
CGAAGATGAGCAATCTTTTTGCTGAGGTGGCTCAGCAGCGTCCGCTATGG
GAACAAGCGAAGCAGCGGGAGCAGATTTACCGCGCAGAAGTTGCCGAGCT
CAAGGCGCAAACAGCAAGCAAAGCAACTGAGCTTGAGGTCGTGGCGAGGG
CGATGGTGGCGTTGGAAGCACGGCTAGCGGAGGAAGAAGAAGGGAAAAGG
AATGCGCACATCTCTGTCATGCGACTGGAAGCCCAGCTCAAGGCGCAAAC
AGCAAGCAAAGCAACTGAGCTTGAGGTCGTGGCGAGGGCGATGGTGGCGT
TGGAAGCACGGCTAGCGGAGGAAGAAGAAGGGAAAAGGAATGCGCACATC
TCTGTCATGCGACTGGAAGCCCAGGGCAAAAGCCTAAAACAGGAGTTGCA
GCGGCAGCACAAAGCACTCTCCGTGGCACAAGACCACGAAGCCAACCTGC
AAACCCGGTTGGCGGACCAGGAGGCCGTGCTACGAGCCATGGAAAGCGAT
CAGCGTGGAAAATCTGTGAGTTCTCTTGTTTGGTTATCGTAGGGCAAAAG
CCTAAAACAGGAGTTGCAGCGGCAGCACAAAGCACTCTCCGTGGCACAAG
ACCACGAAGCCAACCTGCAAACCCGGTTGGCGGACCAGGAGGCCGTGCTA
CGAGCCATGGAAAGCGATCAGCGTGGAAAATCTGTGAGTTCTCTTGTTTG
GTTATCGTAG
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