mRNA_H-canaliculatus_F_contig12153.1862.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12153.1862.1
Unique NamemRNA_H-canaliculatus_F_contig12153.1862.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12153.1862.1 vs. uniprot
Match: A0A6H5KQA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQA3_9PHAE)

HSP 1 Score: 285 bits (730), Expect = 4.120e-86
Identity = 141/170 (82.94%), Postives = 155/170 (91.18%), Query Frame = 1 
Query:    1 GYVHIRTDGRSMVVPVELHVSRGGVDPSPSEVDFGVLTSSLERRQASVSLFNGGTEPVLILGASVSNPDPRINVGFREGTVIAAGEVMDDAVRLVYSGGEPVLTGGEPASDLSAHTGGQVFIALNHTAPDLSVVEISYRAHILHGGVAYEWGQVSFQVDVGIGGSSATSA 510
            GYVHIRTDG SMVVPVELHVS+GGVDP+P EVDFGVLTSSLERRQASVSLFNGGT+P+LILGASVSNPDPRINVGFREGTVI AGE MDDAVRLVYSGGEP+L+GGE ASD +A+ GG+V IA+NHT P+LS+VEI YRAH+LHGGVAYEWGQVSFQVDVG G  S  +A
Sbjct:  493 GYVHIRTDGESMVVPVELHVSKGGVDPTPLEVDFGVLTSSLERRQASVSLFNGGTQPILILGASVSNPDPRINVGFREGTVIGAGEGMDDAVRLVYSGGEPLLSGGEHASDPAANAGGKVLIAVNHTTPELSIVEIGYRAHVLHGGVAYEWGQVSFQVDVGGGSDSLATA 662
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BLAST of mRNA_H-canaliculatus_F_contig12153.1862.1 vs. uniprot
Match: D8LB05_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB05_ECTSI)

HSP 1 Score: 277 bits (708), Expect = 3.740e-83
Identity = 137/165 (83.03%), Postives = 150/165 (90.91%), Query Frame = 1 
Query:    1 GYVHIRTDGRSMVVPVELHVSRGGVDPSPSEVDFGVLTSSLERRQASVSLFNGGTEPVLILGASVSNPDPRINVGFREGTVIAAGEVMDDAVRLVYSGGEPVLTGGEPASDLSAHTGGQVFIALNHTAPDLSVVEISYRAHILHGGVAYEWGQVSFQVDVGIGGS 495
            GYVHIRTDG SMVVPVELHVS+GGVDPSP EVDFGVLTSSLERRQASVSL+NGGT+P+LILGASVSNPDPRINVGFREGTVI AGE MDDAVRLVYSGGEP+L+GGE ASD +A+ GG+V IA+NHT P+LS+VEI YRAH+LHGGVAYEWGQVSFQ    IG S
Sbjct:  403 GYVHIRTDGESMVVPVELHVSKGGVDPSPLEVDFGVLTSSLERRQASVSLYNGGTQPILILGASVSNPDPRINVGFREGTVIGAGEGMDDAVRLVYSGGEPLLSGGEHASDPAANAGGKVLIAVNHTTPELSIVEIGYRAHVLHGGVAYEWGQVSFQAVNNIGSS 567
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BLAST of mRNA_H-canaliculatus_F_contig12153.1862.1 vs. uniprot
Match: A0A7S1RDK5_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1RDK5_ALECA)

HSP 1 Score: 60.1 bits (144), Expect = 1.780e-8
Identity = 29/75 (38.67%), Postives = 44/75 (58.67%), Query Frame = 1 
Query:    1 GYVHIRTDGRSMVVPVELHVSRGGVDPSPSEVDFGVLTSSLERRQASVSLFNGGTEPVLILGASVSNPDPRINVG 225
            G+VH++ D  S++VPVE+ V+RGGV  SP  VDF  L S L+ R   +++ N    P+ +L       DP + +G
Sbjct:   41 GFVHVKADQDSLLVPVEVLVTRGGVHVSPELVDFQTLVSPLQARSLWLTITNLNPRPIELLSLFDPKQDPGLQIG 115
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BLAST of mRNA_H-canaliculatus_F_contig12153.1862.1 vs. uniprot
Match: UPI000644804F (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644804F)

HSP 1 Score: 58.5 bits (140), Expect = 7.230e-7
Identity = 42/162 (25.93%), Postives = 73/162 (45.06%), Query Frame = 1 
Query:    1 GYVHIRTDGRSMVVPVELHVSRGGVDPSPSEVDFGVLTSSLERRQASVSLFNGGTEPVLILGASVSNPDPRINVGFREGTVIAAGEVMDDAVRLVYSGGEPVLTGGEPASDLSAHTGGQVFIALNHTAPDLSVVEISYRAHILHGGVAYEWGQVSFQVDVGI 486
            G V+I T+  +  + V++     GV  SPSE+DFG LTS  + +  S+   N   + + I+      PDP +   F    VI A +   D  +  Y+            SD+     G++ I +         +E+ YRA++L+G ++Y    + F +D  +
Sbjct:  442 GLVNIETNVENFQIQVDILSVGEGVHISPSEIDFGYLTSKTDYKSVSLYFLNANEQMLNIMEIHPDVPDPNLRF-FLHYDVIPADKSKIDIAQFFYT------------SDVEGSFSGKIIIKVF----GYKDIEVPYRANVLYGDLSYHPRNILFPIDTSL 586
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BLAST of mRNA_H-canaliculatus_F_contig12153.1862.1 vs. uniprot
Match: A0A0G4E869_VITBC (TMEM131_like_N domain-containing protein n=5 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4E869_VITBC)

HSP 1 Score: 56.2 bits (134), Expect = 4.540e-6
Identity = 49/182 (26.92%), Postives = 79/182 (43.41%), Query Frame = 1 
Query:    1 GYVHIRTDGRSMVVPVELHVSR---GGVDPSPSEVDFGVLTSSLERRQASVSLFNGGTEPVLI--LGASVSNPDPRINVGFREGTVIAAGEVMDDAVRLVYSGGEPVLTGGEPASDLSAHTGGQ--VFIALNHTAPDLSVV-------------------EISYRAHILHGGVAYEWGQVSF 468
            G+VH++TD  +M+VPV +   +   GG+  SP E+DF  L S  + R  S+ + N    PV +  L       D R+   F +  ++  G+ +  A ++ Y   E     G+ +  +  HT     VF A N T P ++V                    EI YRA ++ G + +   Q  F
Sbjct:  461 GFVHVKTDRETMLVPVSIECVQEEGGGLQISPEELDFQTLVSRQQARVMSLFVANASPYPVSLTKLTQPAYQNDSRLIFHFDQNVMVPPGQTIRYA-KVTYMASEE----GDFSGTVLLHTNATSAVFAAKNATTPTVAVASAGGGSKGGKKTTKSSGIFEIPYRARVVFGSLGFYNEQTKF 637
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BLAST of mRNA_H-canaliculatus_F_contig12153.1862.1 vs. uniprot
Match: A0A7S4BJ69_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BJ69_CHRCT)

HSP 1 Score: 52.8 bits (125), Expect = 6.400e-5
Identity = 39/145 (26.90%), Postives = 71/145 (48.97%), Query Frame = 1 
Query:    1 GYVHIRTDGRSMVVPVELHVSRGGVDPSPSEVDFGVLTSSLERRQASVSLFNGGTEPVLILGASVSNPDPRINVGFREGTVIAAGEVMDDAVRLVYSGGEPVLTGGEPASDLSAHTGGQVFIALNHTAPDLSVVEISYRAHILHG 435
            GYVHI+TD  ++++P ++ V    +   P  +DFG+L +  +  +  + + N G   VL+   S + PD  ++V     T++  GE +  A  LV++   P + G         H  G V +   H+  +   +E++Y A +L G
Sbjct:  324 GYVHIKTDVDTLIIPFQISVVAETLRYEPGLLDFGLLHALAQSSEQPLVVHNVGDSDVLVRAVSPAAPDAALSVQMATQTLLIPGETLQIAT-LVFT---PQVDG---------HFSGSVLV---HS--EGKPLEVNYAARVLVG 450
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12153.1862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KQA3_9PHAE4.120e-8682.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB05_ECTSI3.740e-8383.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1RDK5_ALECA1.780e-838.67Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
UPI000644804F7.230e-725.93hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A0G4E869_VITBC4.540e-626.92TMEM131_like_N domain-containing protein n=5 Tax=V... [more]
A0A7S4BJ69_CHRCT6.400e-526.90Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12153contigH-canaliculatus_F_contig12153:1799..3653 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score279.3
Seed ortholog evalue1.2e-72
Seed eggNOG ortholog2880.D8LB05
Preferred nameTMEM131
GOsGO:0002682,GO:0002683,GO:0002694,GO:0002695,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0007162,GO:0008150,GO:0008285,GO:0009966,GO:0009968,GO:0010646,GO:0010648,GO:0016020,GO:0022407,GO:0022408,GO:0023051,GO:0023057,GO:0030111,GO:0030155,GO:0030178,GO:0032944,GO:0032945,GO:0033081,GO:0033083,GO:0033084,GO:0033085,GO:0033087,GO:0033088,GO:0042127,GO:0042129,GO:0042130,GO:0044424,GO:0044464,GO:0045580,GO:0045581,GO:0045595,GO:0045596,GO:0045619,GO:0045620,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050670,GO:0050672,GO:0050789,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050866,GO:0050868,GO:0051093,GO:0051239,GO:0051241,GO:0051249,GO:0051250,GO:0060828,GO:0065007,GO:0070663,GO:0070664,GO:0071944,GO:0090090,GO:1902105,GO:1902106,GO:1903037,GO:1903038,GO:1903706,GO:1903707,GO:2000026
EggNOG free text desc.negative regulation of immature T cell proliferation in thymus
EggNOG OGsKOG3620@1,KOG3620@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size512
Cds size510
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12153.1862.1prot_H-canaliculatus_F_contig12153.1862.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12153 1801..3653 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928928.7800028-CDS-H-canaliculatus_F_contig12153:1800..19791622928928.7800028-CDS-H-canaliculatus_F_contig12153:1800..1979Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12153 1801..1979 -
1696845616.1002874-CDS-H-canaliculatus_F_contig12153:1800..19791696845616.1002874-CDS-H-canaliculatus_F_contig12153:1800..1979Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12153 1801..1979 -
1622928928.7932544-CDS-H-canaliculatus_F_contig12153:2752..29251622928928.7932544-CDS-H-canaliculatus_F_contig12153:2752..2925Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12153 2753..2925 -
1696845616.1197445-CDS-H-canaliculatus_F_contig12153:2752..29251696845616.1197445-CDS-H-canaliculatus_F_contig12153:2752..2925Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12153 2753..2925 -
1622928928.811533-CDS-H-canaliculatus_F_contig12153:3495..36531622928928.811533-CDS-H-canaliculatus_F_contig12153:3495..3653Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12153 3496..3653 -
1696845616.1328495-CDS-H-canaliculatus_F_contig12153:3495..36531696845616.1328495-CDS-H-canaliculatus_F_contig12153:3495..3653Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12153 3496..3653 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12153.1862.1

>prot_H-canaliculatus_F_contig12153.1862.1 ID=prot_H-canaliculatus_F_contig12153.1862.1|Name=mRNA_H-canaliculatus_F_contig12153.1862.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=170bp
GYVHIRTDGRSMVVPVELHVSRGGVDPSPSEVDFGVLTSSLERRQASVSL
FNGGTEPVLILGASVSNPDPRINVGFREGTVIAAGEVMDDAVRLVYSGGE
PVLTGGEPASDLSAHTGGQVFIALNHTAPDLSVVEISYRAHILHGGVAYE
WGQVSFQVDVGIGGSSATSA
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mRNA from alignment at H-canaliculatus_F_contig12153:1799..3653-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12153.1862.1 ID=mRNA_H-canaliculatus_F_contig12153.1862.1|Name=mRNA_H-canaliculatus_F_contig12153.1862.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1855bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12153:1799..3653- (Hapterophycus canaliculatus Oshoro5f female)
GGGTACGTTCACATCCGCACCGATGGGCGGAGCATGGTTGTCCCCGTGGA
GTTGCACGTGTCGCGGGGAGGCGTCGACCCCAGCCCGTCTGAGGTGGACT
TCGGGGTGCTGACTTCGTCGCTGGAGCGTCGGCAGGCCTCGGTGTCGCTG
TTCAACGGGTGAGGCCCGAGATTGCGATGGCCTAGCTTGTGTCTGCTGAT
CCTGTCTTCGTTGTGGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTTGCGCTGCTGTTATCGTCTCCGTCC
TTGCCGTCCAAGTCGATGTCGGTCTCCCTGTTGACCTTTGCCATCCGGCC
CGGCCCCGAGACGGCCCCCCCCTCTCCCCTTCCCTTCCCCCCAGGGTTAC
GCTCGTCAGAAGCCGGTGCTGCCGTTAGTGGCGCTTAGTGTCGGCCTCAG
ATGTCATGTGAAACAGGGTGTCGTTCTTCTTGGTTGAGTTGGCGGTGCCG
TCGGGCGCTGTAGTGCGGCTTGTTTTGCCTGATTTTCTCGCCGCCGTGGT
CGTCTTAGGGCTAAGGCAAGGGAGACGGGCGCGCGCAATAATCAATTTAA
AAAAAAAAAAATGGTGTTGTTGATTGGTACTTAAGCTTAAAAAAAATGTC
GAAATCGCCGAGATCGACCTGTCCCTCCCTGCCGCGCAACCCGCGCCGCC
GCCCTCTCCCCGGTTGTCCACCTCGTAGCGGCACCGAGCCCGTCCTGATC
TTGGGCGCAAGCGTTAGCAACCCCGACCCCCGGATCAACGTGGGCTTTCG
TGAGGGGACCGTCATCGCGGCCGGCGAGGTGATGGACGACGCCGTGCGGC
TCGTGTACAGCGGCGGGGAGCCGGTGCTGACGGGAGGGGAGCCGGCCTCG
GGTAAGTCGAGTGTCGGGTGTGATCGTCCCGTCTGGTCTAGTTTGCGGCA
CCTGCGGGGGCGTGGTGGAAAGTGTGGCGGGAGGAGACAAAGGAGACAAA
AGGAGACGAGGTGGTTTCGATGGAAATCTGGAACTTCGTGCCTTCCGTCG
CCGTTGAAAAAAAAAGAAAAACATGCTGCTGTGATGAGCGTGCCATGGAG
CGTTGAGATATGCCTGAGCTTTGGCGTCCGTTATCCCACGAGATCTCCTA
AGAAGGGTTTCACCGCCTGCTTCGCCCGTTGTTTTTTTTTGTCCATCGCT
ACACTGAGCCCAGCCCTAACCCTTGCCGTAAGAAATTCAACACAATCCCC
AGCGTCGCTGAAACGTGTATCGGAGGAGGGTCCTCTGGTGATGTTGACTA
TTTCTCCTGAAGAGGTGCGCTGCACACACGCACGCACACACACGCACACA
CACACACACACGCGCGCATACACACACACACGCGCGCGCGCGCGCGCACA
CACACACACACACACACACACACAAGCAGCTGCTTGCTCTTGTCCCCGCG
CATCGAACGGTACCCCAAGGTCATCCACATTGCCGTCCCCCTGTCGCTGC
TGCCTCTTCCTTTCTTGGAACCGGGAAGTGCTCTCTCTCACACACACACA
CACACACACACACGCGTCACGCGCGATCTACCGGTCGCCCCTCCGCATGC
TTGTTTCTCTCTCTTCCTGTGTGTCTCGCTGTGTCGATCTTACATTTGTC
GTCCTGCTTGTTTTGGTCCGACAGACCTGTCAGCACACACGGGCGGGCAG
GTCTTCATCGCCCTCAACCACACCGCGCCCGACTTGTCGGTGGTAGAGAT
CAGCTACCGCGCGCACATCCTCCACGGCGGCGTCGCCTACGAATGGGGCC
AGGTCAGCTTCCAGGTGGACGTGGGCATCGGCGGCAGCTCGGCCACTTCC
GCTGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12153:1799..3653-

>mRNA_H-canaliculatus_F_contig12153.1862.1 ID=mRNA_H-canaliculatus_F_contig12153.1862.1|Name=mRNA_H-canaliculatus_F_contig12153.1862.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1020bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12153:1799..3653- (Hapterophycus canaliculatus Oshoro5f female)
GGGTACGTTCACATCCGCACCGATGGGCGGAGCATGGTTGTCCCCGTGGA
GTTGCACGTGTCGCGGGGAGGCGTCGACCCCAGCCCGTCTGAGGTGGACT
TCGGGGTGCTGACTTCGTCGCTGGAGCGTCGGCAGGCCTCGGTGTCGCTG
TTCAACGGGGGTACGTTCACATCCGCACCGATGGGCGGAGCATGGTTGTC
CCCGTGGAGTTGCACGTGTCGCGGGGAGGCGTCGACCCCAGCCCGTCTGA
GGTGGACTTCGGGGTGCTGACTTCGTCGCTGGAGCGTCGGCAGGCCTCGG
TGTCGCTGTTCAACGGCGGCACCGAGCCCGTCCTGATCTTGGGCGCAAGC
GTTAGCAACCCCGACCCCCGGATCAACGTGGGCTTTCGTGAGGGGACCGT
CATCGCGGCCGGCGAGGTGATGGACGACGCCGTGCGGCTCGTGTACAGCG
GCGGGGAGCCGGTGCTGACGGGAGGGGAGCCGGCCTCGGCGGCACCGAGC
CCGTCCTGATCTTGGGCGCAAGCGTTAGCAACCCCGACCCCCGGATCAAC
GTGGGCTTTCGTGAGGGGACCGTCATCGCGGCCGGCGAGGTGATGGACGA
CGCCGTGCGGCTCGTGTACAGCGGCGGGGAGCCGGTGCTGACGGGAGGGG
AGCCGGCCTCGGACCTGTCAGCACACACGGGCGGGCAGGTCTTCATCGCC
CTCAACCACACCGCGCCCGACTTGTCGGTGGTAGAGATCAGCTACCGCGC
GCACATCCTCCACGGCGGCGTCGCCTACGAATGGGGCCAGGTCAGCTTCC
AGGTGGACGTGGGCATCGGCGGCAGCTCGGCCACTTCCGCTACCTGTCAG
CACACACGGGCGGGCAGGTCTTCATCGCCCTCAACCACACCGCGCCCGAC
TTGTCGGTGGTAGAGATCAGCTACCGCGCGCACATCCTCCACGGCGGCGT
CGCCTACGAATGGGGCCAGGTCAGCTTCCAGGTGGACGTGGGCATCGGCG
GCAGCTCGGCCACTTCCGCT
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