mRNA_H-canaliculatus_F_contig12125.1845.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12125.1845.1
Unique NamemRNA_H-canaliculatus_F_contig12125.1845.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12125.1845.1 vs. uniprot
Match: D8LLZ8_ECTSI (4Fe-4S ferredoxin, iron-sulfur binding n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLZ8_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 1.870e-18
Identity = 47/63 (74.60%), Postives = 51/63 (80.95%), Query Frame = 1 
Query:    7 RRQVGGVAYGGYARKAVGRALDHLPGGEDGGGRGGAERVEDHPDVLSAALKEASLLVGGLKRP 195
            RR+VGGVAYGGYARK VGRALD LPG        GA RVEDHP+VLSAAL+EASLLV GLK+P
Sbjct:  486 RRRVGGVAYGGYARKTVGRALDRLPGK-------GAGRVEDHPEVLSAALREASLLVRGLKQP 541
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BLAST of mRNA_H-canaliculatus_F_contig12125.1845.1 vs. uniprot
Match: A0A0A9JWB1_ARUDO (LdpA_C domain-containing protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9JWB1_ARUDO)

HSP 1 Score: 59.3 bits (142), Expect = 3.040e-10
Identity = 31/58 (53.45%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   16 VGGVAYGGYARKAVGRALDHLPGGEDGGGRGGAERVEDHPDVLSAALKEASLLVGGLK 189
            +GG+AYGGYARK VGR L  +P       + G  R+EDHPD L  AL+EA  LVG +K
Sbjct:    9 IGGIAYGGYARKIVGRTLCKIP------AQFGRGRIEDHPDYLMEALQEAMSLVGPVK 60
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BLAST of mRNA_H-canaliculatus_F_contig12125.1845.1 vs. uniprot
Match: A0A445AD63_ARAHY (LdpA_C domain-containing protein n=1 Tax=Arachis hypogaea TaxID=3818 RepID=A0A445AD63_ARAHY)

HSP 1 Score: 60.1 bits (144), Expect = 3.060e-9
Identity = 33/58 (56.90%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   16 VGGVAYGGYARKAVGRALDHLPGGEDGGGRGGAERVEDHPDVLSAALKEASLLVGGLK 189
            +GG+AYGGYARK VGRAL  +         GGA R+EDHP  L  ALKEA  LVG +K
Sbjct:  177 IGGIAYGGYARKIVGRALRSMQ-----SEYGGAARIEDHPQHLLMALKEALALVGPVK 229
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BLAST of mRNA_H-canaliculatus_F_contig12125.1845.1 vs. uniprot
Match: A0A444WPK9_ARAHY (LdpA_C domain-containing protein n=1 Tax=Arachis hypogaea TaxID=3818 RepID=A0A444WPK9_ARAHY)

HSP 1 Score: 58.5 bits (140), Expect = 4.670e-9
Identity = 32/58 (55.17%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:   16 VGGVAYGGYARKAVGRALDHLPGGEDGGGRGGAERVEDHPDVLSAALKEASLLVGGLK 189
            +GG+AYGGYARK VGR L  +         GGA R+EDHP  L  ALKEA  LVG +K
Sbjct:  108 IGGIAYGGYARKIVGRVLRSMQ-----SEYGGAARIEDHPQHLLMALKEALALVGPVK 160
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BLAST of mRNA_H-canaliculatus_F_contig12125.1845.1 vs. uniprot
Match: A0A4S8ICW4_MUSBA (LdpA_C domain-containing protein n=1 Tax=Musa balbisiana TaxID=52838 RepID=A0A4S8ICW4_MUSBA)

HSP 1 Score: 57.4 bits (137), Expect = 1.020e-8
Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:   16 VGGVAYGGYARKAVGRALDHLPGGEDGGGRGGAERVEDHPDVLSAALKEASLLVGGLK 189
            +GG+AYGGYARK VG+ L  +P       + G  R+EDHP+ L+ A+KEA  L+G +K
Sbjct:   90 IGGIAYGGYARKIVGKILHKMP------TQHGHARIEDHPEYLTEAVKEAVTLIGPVK 141
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BLAST of mRNA_H-canaliculatus_F_contig12125.1845.1 vs. uniprot
Match: A0A8J5VH37_ZIZPA (LdpA_C domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5VH37_ZIZPA)

HSP 1 Score: 59.3 bits (142), Expect = 1.090e-8
Identity = 31/58 (53.45%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   16 VGGVAYGGYARKAVGRALDHLPGGEDGGGRGGAERVEDHPDVLSAALKEASLLVGGLK 189
            +GG+AYGGYARK VGR L  +P       + G  R+EDHPD L  AL+EA  LVG +K
Sbjct:  358 IGGIAYGGYARKIVGRVLRKIP------AQFGHARIEDHPDYLLEALQEALTLVGPVK 409
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BLAST of mRNA_H-canaliculatus_F_contig12125.1845.1 vs. uniprot
Match: UPI00077554B4 (uncharacterized protein LOC4337868 isoform X2 n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=UPI00077554B4)

HSP 1 Score: 58.9 bits (141), Expect = 1.430e-8
Identity = 31/58 (53.45%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   16 VGGVAYGGYARKAVGRALDHLPGGEDGGGRGGAERVEDHPDVLSAALKEASLLVGGLK 189
            +GG+AYGGYARK VGR L  +P       + G  R+EDHPD L  AL+EA  LVG +K
Sbjct:  298 IGGIAYGGYARKIVGRVLRKIP------AQFGHARIEDHPDYLLEALQEALSLVGPVK 349
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BLAST of mRNA_H-canaliculatus_F_contig12125.1845.1 vs. uniprot
Match: A0A444ZEV2_ARAHY (4Fe-4S ferredoxin-type domain-containing protein n=2 Tax=Arachis TaxID=3817 RepID=A0A444ZEV2_ARAHY)

HSP 1 Score: 58.5 bits (140), Expect = 1.470e-8
Identity = 32/58 (55.17%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:   16 VGGVAYGGYARKAVGRALDHLPGGEDGGGRGGAERVEDHPDVLSAALKEASLLVGGLK 189
            +GG+AYGGYARK VGR L  +         GGA R+EDHP  L  ALKEA  LVG +K
Sbjct:  210 IGGIAYGGYARKIVGRVLRSMQ-----SEYGGAARIEDHPQHLLMALKEALALVGPVK 262
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BLAST of mRNA_H-canaliculatus_F_contig12125.1845.1 vs. uniprot
Match: A0A0D9WD24_9ORYZ (4Fe-4S ferredoxin-type domain-containing protein n=5 Tax=Oryzinae TaxID=1648021 RepID=A0A0D9WD24_9ORYZ)

HSP 1 Score: 58.9 bits (141), Expect = 1.480e-8
Identity = 31/58 (53.45%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   16 VGGVAYGGYARKAVGRALDHLPGGEDGGGRGGAERVEDHPDVLSAALKEASLLVGGLK 189
            +GG+AYGGYARK VGR L  +P       + G  R+EDHPD L  AL+EA  LVG +K
Sbjct:  350 IGGIAYGGYARKIVGRVLRKIP------AQFGHARIEDHPDYLLEALQEALSLVGPVK 401
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12125.1845.1 vs. uniprot
Match: Q75M00_ORYSJ (Os05g0157300 protein n=13 Tax=Oryza TaxID=4527 RepID=Q75M00_ORYSJ)

HSP 1 Score: 58.9 bits (141), Expect = 1.480e-8
Identity = 31/58 (53.45%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   16 VGGVAYGGYARKAVGRALDHLPGGEDGGGRGGAERVEDHPDVLSAALKEASLLVGGLK 189
            +GG+AYGGYARK VGR L  +P       + G  R+EDHPD L  AL+EA  LVG +K
Sbjct:  353 IGGIAYGGYARKIVGRVLRKIP------AQFGHARIEDHPDYLLEALQEALSLVGPVK 404
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12125.1845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLZ8_ECTSI1.870e-1874.604Fe-4S ferredoxin, iron-sulfur binding n=1 Tax=Ect... [more]
A0A0A9JWB1_ARUDO3.040e-1053.45LdpA_C domain-containing protein n=1 Tax=Arundo do... [more]
A0A445AD63_ARAHY3.060e-956.90LdpA_C domain-containing protein n=1 Tax=Arachis h... [more]
A0A444WPK9_ARAHY4.670e-955.17LdpA_C domain-containing protein n=1 Tax=Arachis h... [more]
A0A4S8ICW4_MUSBA1.020e-848.28LdpA_C domain-containing protein n=1 Tax=Musa balb... [more]
A0A8J5VH37_ZIZPA1.090e-853.45LdpA_C domain-containing protein n=1 Tax=Zizania p... [more]
UPI00077554B41.430e-853.45uncharacterized protein LOC4337868 isoform X2 n=1 ... [more]
A0A444ZEV2_ARAHY1.470e-855.174Fe-4S ferredoxin-type domain-containing protein n... [more]
A0A0D9WD24_9ORYZ1.480e-853.454Fe-4S ferredoxin-type domain-containing protein n... [more]
Q75M00_ORYSJ1.480e-853.45Os05g0157300 protein n=13 Tax=Oryza TaxID=4527 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12125contigH-canaliculatus_F_contig12125:3452..3649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue3.5e-15
Seed eggNOG ortholog2880.D8LLZ8
EggNOG free text desc.Iron-Sulfur binding protein C terminal
EggNOG OGs2QU4W@2759,COG1142@1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog description4Fe-4S ferredoxin, iron-sulfur binding
Ec32 orthologEc-14_002270.2
Exons1
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928926.5191586-CDS-H-canaliculatus_F_contig12125:3451..36491622928926.5191586-CDS-H-canaliculatus_F_contig12125:3451..3649Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12125 3452..3649 -
1696845615.2749226-CDS-H-canaliculatus_F_contig12125:3451..36491696845615.2749226-CDS-H-canaliculatus_F_contig12125:3451..3649Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12125 3452..3649 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12125.1845.1prot_H-canaliculatus_F_contig12125.1845.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12125 3452..3649 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12125.1845.1

>prot_H-canaliculatus_F_contig12125.1845.1 ID=prot_H-canaliculatus_F_contig12125.1845.1|Name=mRNA_H-canaliculatus_F_contig12125.1845.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=66bp
RRRRQVGGVAYGGYARKAVGRALDHLPGGEDGGGRGGAERVEDHPDVLSA
ALKEASLLVGGLKRP*
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mRNA from alignment at H-canaliculatus_F_contig12125:3452..3649-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12125.1845.1 ID=mRNA_H-canaliculatus_F_contig12125.1845.1|Name=mRNA_H-canaliculatus_F_contig12125.1845.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=198bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12125:3452..3649- (Hapterophycus canaliculatus Oshoro5f female)
CGAAGAAGGAGGCAAGTCGGAGGCGTCGCCTACGGAGGGTACGCGCGCAA
GGCCGTGGGCCGCGCGCTAGACCACCTTCCTGGAGGCGAGGATGGTGGCG
GCCGCGGGGGCGCTGAGCGAGTGGAAGACCACCCAGACGTTCTATCGGCG
GCGCTGAAGGAGGCTTCCCTGCTCGTGGGAGGTCTCAAACGCCCGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12125:3452..3649-

>mRNA_H-canaliculatus_F_contig12125.1845.1 ID=mRNA_H-canaliculatus_F_contig12125.1845.1|Name=mRNA_H-canaliculatus_F_contig12125.1845.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=396bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12125:3452..3649- (Hapterophycus canaliculatus Oshoro5f female)
CGAAGAAGGAGGCAAGTCGGAGGCGTCGCCTACGGAGGGTACGCGCGCAA
GGCCGTGGGCCGCGCGCTAGACCACCTTCCTGGAGGCGAGGATGGTGGCG
GCCGCGGGGGCGCTGAGCGAGTGGAAGACCACCCAGACGTTCTATCGGCG
GCGCTGAAGGAGGCTTCCCTGCTCGTGGGAGGTCTCAAACGCCCGTGACG
AAGAAGGAGGCAAGTCGGAGGCGTCGCCTACGGAGGGTACGCGCGCAAGG
CCGTGGGCCGCGCGCTAGACCACCTTCCTGGAGGCGAGGATGGTGGCGGC
CGCGGGGGCGCTGAGCGAGTGGAAGACCACCCAGACGTTCTATCGGCGGC
GCTGAAGGAGGCTTCCCTGCTCGTGGGAGGTCTCAAACGCCCGTGA
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