mRNA_H-canaliculatus_F_contig12125.1844.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12125.1844.1
Unique NamemRNA_H-canaliculatus_F_contig12125.1844.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12125.1844.1 vs. uniprot
Match: D8LM08_ECTSI (SPX domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM08_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 3.310e-40
Identity = 83/105 (79.05%), Postives = 93/105 (88.57%), Query Frame = 1 
Query:    1 LVEVVTVTMCISTFVSHTVAAIVLMPLIVEVGGVGVKSGNPVLLGMASALAVSAGCALPFSSFPNVTALLVTDDYQRKYLVVRDFASSGIPMSVVSVAMVCTIGY 315
            LVEVV VTMCISTFVSHTVAA++LMPLIVEVG   VK GNP+LLG A+ALAVS+GCALPFSSFPNVTALLVTDDYQRKYL V DF +SG+PMS+VSV ++ T GY
Sbjct:  633 LVEVVCVTMCISTFVSHTVAALILMPLIVEVG---VKCGNPILLGAAAALAVSSGCALPFSSFPNVTALLVTDDYQRKYLRVPDFLASGLPMSLVSVVLISTFGY 734
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BLAST of mRNA_H-canaliculatus_F_contig12125.1844.1 vs. uniprot
Match: A0A482SFY9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SFY9_9ARCH)

HSP 1 Score: 89.7 bits (221), Expect = 6.730e-21
Identity = 46/95 (48.42%), Postives = 67/95 (70.53%), Query Frame = 1 
Query:   31 ISTFVSHTVAAIVLMPLIVEVGGVGVKSGNPVLLGMASALAVSAGCALPFSSFPNVTALLVTDDYQRKYLVVRDFASSGIPMSVVSVAMVCTIGY 315
            ++TF+SHTVA+++LMP+I  +G        P  L + SA ++SA   LPFSSFPNV +LL+ DD+Q+ YL V DF  SG+ +SV+SV ++ T+GY
Sbjct:   30 VATFISHTVASLILMPIIYSIGE---TLNIPQALVIGSAFSISAAMGLPFSSFPNVNSLLIVDDFQKSYLTVGDFLVSGMLLSVISVILIATLGY 121
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BLAST of mRNA_H-canaliculatus_F_contig12125.1844.1 vs. uniprot
Match: A0A484DYF7_BRELC (SPX domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DYF7_BRELC)

HSP 1 Score: 94.7 bits (234), Expect = 1.830e-20
Identity = 49/100 (49.00%), Postives = 76/100 (76.00%), Query Frame = 1 
Query:   16 TVTMCISTFVSHTVAAIVLMPLIVEVGGVGVKSGNPVLLGMASALAVSAGCALPFSSFPNVTALLVTDDYQRKYLVVRDFASSGIPMSVVSVAMVCTIGY 315
            T+ +C++TFVSHTVA+I+L+P+IV++    ++ G+P +  +  ALA+SA  ALPFSSFPN+ +LLV DD+ + YL VRDF   G+  S+V++A++ T+GY
Sbjct:  606 TMVICLTTFVSHTVASIILLPIIVQMA---IQIGDPHIPVICCALAISAAMALPFSSFPNINSLLVLDDHGQPYLEVRDFLRVGVTFSLVTMALIITLGY 702
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BLAST of mRNA_H-canaliculatus_F_contig12125.1844.1 vs. uniprot
Match: A0A7S3XRK4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRK4_HETAK)

HSP 1 Score: 91.3 bits (225), Expect = 5.180e-20
Identity = 51/97 (52.58%), Postives = 70/97 (72.16%), Query Frame = 1 
Query:   25 MCISTFVSHTVAAIVLMPLIVEVGGVGVKSGNPVLLGMASALAVSAGCALPFSSFPNVTALLVTDDYQRKYLVVRDFASSGIPMSVVSVAMVCTIGY 315
            M I+TFVSHTVAA+VLMPLIV++G   +  G    LG+ +A AVS   ALPFSSFPN+ +L+V DD  R Y+ + DF   G+P S+ ++A++CT+GY
Sbjct:  177 MGIATFVSHTVAAVVLMPLIVQLGS-DLHLGPH--LGVGTAFAVSTAMALPFSSFPNMNSLMVVDDLHRPYVSLGDFVRLGLPASLYAIALLCTVGY 270
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BLAST of mRNA_H-canaliculatus_F_contig12125.1844.1 vs. uniprot
Match: A0A3M6VJ86_9STRA (SPX domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VJ86_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.200e-19
Identity = 46/96 (47.92%), Postives = 72/96 (75.00%), Query Frame = 1 
Query:   28 CISTFVSHTVAAIVLMPLIVEVGGVGVKSGNPVLLGMASALAVSAGCALPFSSFPNVTALLVTDDYQRKYLVVRDFASSGIPMSVVSVAMVCTIGY 315
            C++TFVSHTVA+I+L+P+IVE+    ++ G+P +  +  A+ +SA  ALPFSSFPN+ +LLV DD+ + YL V+DF   G+  S+V++A++ T+GY
Sbjct:  579 CLTTFVSHTVASIILLPIIVEMA---IQIGHPHIPVICCAMTISAAMALPFSSFPNINSLLVLDDHGQPYLEVKDFLRVGVTFSLVTMALIVTLGY 671
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BLAST of mRNA_H-canaliculatus_F_contig12125.1844.1 vs. uniprot
Match: A0A5D6XQQ2_9STRA (SPX domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQQ2_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 3.010e-19
Identity = 46/100 (46.00%), Postives = 74/100 (74.00%), Query Frame = 1 
Query:   16 TVTMCISTFVSHTVAAIVLMPLIVEVGGVGVKSGNPVLLGMASALAVSAGCALPFSSFPNVTALLVTDDYQRKYLVVRDFASSGIPMSVVSVAMVCTIGY 315
            T+ +C++TFVSHTVA+I+L+P+IV++    ++ G+P +  +  ALA+SA  ALPFSSFPN+ +LLV DD+ + YL V+DF   G+  S+++  ++ T+GY
Sbjct:  603 TLVLCLTTFVSHTVASIILLPIIVQLS---IQIGHPHIPVICCALAISAAMALPFSSFPNINSLLVLDDHGQPYLTVQDFLRVGVTFSLITSVLIVTLGY 699
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BLAST of mRNA_H-canaliculatus_F_contig12125.1844.1 vs. uniprot
Match: K3WUL6_GLOUD (SPX domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WUL6_GLOUD)

HSP 1 Score: 91.3 bits (225), Expect = 3.020e-19
Identity = 46/100 (46.00%), Postives = 74/100 (74.00%), Query Frame = 1 
Query:   16 TVTMCISTFVSHTVAAIVLMPLIVEVGGVGVKSGNPVLLGMASALAVSAGCALPFSSFPNVTALLVTDDYQRKYLVVRDFASSGIPMSVVSVAMVCTIGY 315
            T+ +C++TFVSHTVA+I+L+P+IV++    ++ G+P +  +  ALA+SA  ALPFSSFPN+ +LLV DD+ + YL V+DF   G+  S+++  ++ T+GY
Sbjct:  629 TLVLCLTTFVSHTVASIILLPIIVQLS---IQIGHPHIPVICCALAISAAMALPFSSFPNINSLLVLDDHGQPYLTVQDFLRVGVTFSLITSVLIVTLGY 725
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BLAST of mRNA_H-canaliculatus_F_contig12125.1844.1 vs. uniprot
Match: A0A3R7K7S0_9STRA (SPX domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K7S0_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 4.100e-19
Identity = 50/106 (47.17%), Postives = 78/106 (73.58%), Query Frame = 1 
Query:   13 VTVTMC-----ISTFVSHTVAAIVLMPLIVEVGGVGVKSGNPVLLGMASALAVSAGCALPFSSFPNVTALLVTDDYQRKYLVVRDFASSGIPMSVVSVAMVCTIGY 315
            VTV++C     ++TFVSHTVA+I+L+P+IVE+    ++ G+P +  +  ALA+SA  ALPFSSFPN+ +LLV DD+ + YL V+DF   G+  S+++V+++ T+GY
Sbjct:  595 VTVSLCGLVIGLTTFVSHTVASIILLPIIVEMA---IQIGHPHIPVICCALAISAAMALPFSSFPNINSLLVLDDHGQPYLEVKDFLRVGVTFSLITVSLIVTLGY 697
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BLAST of mRNA_H-canaliculatus_F_contig12125.1844.1 vs. uniprot
Match: A0A2D4BF18_PYTIN (SPX domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BF18_PYTIN)

HSP 1 Score: 88.2 bits (217), Expect = 3.620e-18
Identity = 48/107 (44.86%), Postives = 79/107 (73.83%), Query Frame = 1 
Query:   10 VVTVTMCI-----STFVSHTVAAIVLMPLIVEVGGVGVKSGNPVLLGMASALAVSAGCALPFSSFPNVTALLVTDDYQRKYLVVRDFASSGIPMSVVSVAMVCTIGY 315
            ++TV++C+     +TFVSHTV +I+L+P+IV++    ++ G+P +  ++ ALA+SA  ALPFSSFPN+ +LLV DD+ + YL V+DF   GI  S+++VA++ T+G+
Sbjct:  603 IITVSLCLLVLSLTTFVSHTVGSIILLPIIVQMS---IEIGHPHIPVISCALAISAAMALPFSSFPNINSLLVLDDHGQPYLQVQDFLRVGITFSLITVALIVTLGF 706
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BLAST of mRNA_H-canaliculatus_F_contig12125.1844.1 vs. uniprot
Match: A0A024G9K9_9STRA (SPX domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G9K9_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 3.640e-18
Identity = 48/99 (48.48%), Postives = 73/99 (73.74%), Query Frame = 1 
Query:   19 VTMCISTFVSHTVAAIVLMPLIVEVGGVGVKSGNPVLLGMASALAVSAGCALPFSSFPNVTALLVTDDYQRKYLVVRDFASSGIPMSVVSVAMVCTIGY 315
            V + ++TFVSHTVA+I+++P+IV++    V+ G+P +  +  ALA+SA  ALPFSSFPN+ +LLV DD+ + YL V+DF   GI  S+++V ++ TIGY
Sbjct:  653 VVLSLTTFVSHTVASIIMLPIIVQIS---VEVGHPHIPVICCALAISAAMALPFSSFPNINSLLVLDDHGQPYLKVQDFLRVGIFFSLITVFLIVTIGY 748
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12125.1844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM08_ECTSI3.310e-4079.05SPX domain-containing protein (Fragment) n=2 Tax=E... [more]
A0A482SFY9_9ARCH6.730e-2148.42Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A484DYF7_BRELC1.830e-2049.00SPX domain-containing protein n=1 Tax=Bremia lactu... [more]
A0A7S3XRK4_HETAK5.180e-2052.58Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A3M6VJ86_9STRA2.200e-1947.92SPX domain-containing protein n=2 Tax=Peronospora ... [more]
A0A5D6XQQ2_9STRA3.010e-1946.00SPX domain-containing protein n=1 Tax=Pythium bras... [more]
K3WUL6_GLOUD3.020e-1946.00SPX domain-containing protein n=1 Tax=Globisporang... [more]
A0A3R7K7S0_9STRA4.100e-1947.17SPX domain-containing protein n=3 Tax=Phytophthora... [more]
A0A2D4BF18_PYTIN3.620e-1844.86SPX domain-containing protein n=1 Tax=Pythium insi... [more]
A0A024G9K9_9STRA3.640e-1848.48SPX domain-containing protein n=1 Tax=Albugo candi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12125contigH-canaliculatus_F_contig12125:445..1078 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.0
Seed ortholog evalue9.3e-33
Seed eggNOG ortholog2880.D8LM08
Preferred namePHO91
KEGG rclassRC00210,RC00700,RC02868
KEGG koko:K01694,ko:K14430,ko:K20183
KEGG TC2.A.47.2
KEGG ReactionR02722
KEGG Pathwayko00260,ko00400,ko01100,ko01110,ko01130,ko01230,ko04138,map00260,map00400,map01100,map01110,map01130,map01230,map04138
KEGG ModuleM00023
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005215,GO:0005315,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005886,GO:0006082,GO:0006793,GO:0006797,GO:0006810,GO:0006811,GO:0006817,GO:0006820,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0009987,GO:0010966,GO:0015075,GO:0015169,GO:0015291,GO:0015318,GO:0015605,GO:0015698,GO:0015711,GO:0015748,GO:0015794,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0031090,GO:0031224,GO:0032879,GO:0034220,GO:0034762,GO:0034765,GO:0035435,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0043436,GO:0044070,GO:0044232,GO:0044237,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0051049,GO:0051179,GO:0051234,GO:0055085,GO:0065007,GO:0071702,GO:0071704,GO:0071944,GO:0097080,GO:0098588,GO:0098656,GO:0098660,GO:0098661,GO:0098805,GO:0098852,GO:1901264,GO:1901505,GO:1903795,GO:1903959,GO:1990816,GO:2000185
EggNOG free text desc.succinate transmembrane transporter activity
EggNOG OGsCOG0471@1,KOG1281@2759
EC4.2.1.20
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko04131
Hectar predicted targeting categorysignal peptide
Exons2
Model size315
Cds size291
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12125.1844.1prot_H-canaliculatus_F_contig12125.1844.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12125 469..1078 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928926.4428132-UTR-H-canaliculatus_F_contig12125:444..4681622928926.4428132-UTR-H-canaliculatus_F_contig12125:444..468Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12125 445..468 +
1696845615.2394018-UTR-H-canaliculatus_F_contig12125:444..4681696845615.2394018-UTR-H-canaliculatus_F_contig12125:444..468Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12125 445..468 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928926.4593155-CDS-H-canaliculatus_F_contig12125:468..5431622928926.4593155-CDS-H-canaliculatus_F_contig12125:468..543Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12125 469..543 +
1696845615.2546213-CDS-H-canaliculatus_F_contig12125:468..5431696845615.2546213-CDS-H-canaliculatus_F_contig12125:468..543Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12125 469..543 +
1622928926.4700723-CDS-H-canaliculatus_F_contig12125:862..10781622928926.4700723-CDS-H-canaliculatus_F_contig12125:862..1078Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12125 863..1078 +
1696845615.2636766-CDS-H-canaliculatus_F_contig12125:862..10781696845615.2636766-CDS-H-canaliculatus_F_contig12125:862..1078Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12125 863..1078 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12125.1844.1

>prot_H-canaliculatus_F_contig12125.1844.1 ID=prot_H-canaliculatus_F_contig12125.1844.1|Name=mRNA_H-canaliculatus_F_contig12125.1844.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=97bp
MCISTFVSHTVAAIVLMPLIVEVGGVGVKSGNPVLLGMASALAVSAGCAL
PFSSFPNVTALLVTDDYQRKYLVVRDFASSGIPMSVVSVAMVCTIGY
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mRNA from alignment at H-canaliculatus_F_contig12125:445..1078+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12125.1844.1 ID=mRNA_H-canaliculatus_F_contig12125.1844.1|Name=mRNA_H-canaliculatus_F_contig12125.1844.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=634bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12125:445..1078+ (Hapterophycus canaliculatus Oshoro5f female)
TTGGTGGAAGTGGTGACCGTGACGATGTGCATCTCCACCTTCGTAAGCCA
CACCGTAGCCGCCATCGTGCTCATGCCGCTCATTGTCGAGGTGGGTGGAG
TGTACATGTCCGTTCAAGCACGTGTGGGTCGAAGCTCCCGTGTGCTCTGT
GCTCGTGAGCCTTTTGAAGCACCCTCGCAGGTGTGTGTGGATGCACACAT
GTAGAGGCGCGTGCGCGGGTAGGCGTGTCTGCGTGTGTGCGCGTGTCTGC
GCGTGTGTGCGCGCGTGTGCGCGCGTGTGCGTTTGTGTTTGCGTCCTCAG
CGTGTTCCGTTTGGTTCACCATGCGGTCGTTATCGCCGCCATCGACCGCG
AGTGACGCGGAATGCCCGGCAAGCCAGCCAACGCGCATACGGCGCCCCGT
CCCCCCCACCCACCGCAGGTGGGCGTCAAGTCCGGCAACCCGGTCCTCCT
GGGCATGGCCTCCGCCCTCGCCGTCTCCGCCGGATGCGCGCTCCCCTTCT
CTTCCTTCCCCAACGTGACCGCACTGCTGGTGACCGATGACTACCAGCGC
AAGTACCTAGTGGTCCGAGACTTCGCGAGCTCTGGGATCCCGATGTCCGT
CGTGTCGGTGGCGATGGTCTGCACGATCGGCTAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12125:445..1078+

>mRNA_H-canaliculatus_F_contig12125.1844.1 ID=mRNA_H-canaliculatus_F_contig12125.1844.1|Name=mRNA_H-canaliculatus_F_contig12125.1844.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=582bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12125:445..1078+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTGCATCTCCACCTTCGTAAGCCACACCGTAGCCGCCATCGTGCTCAT
GCCGCTCATTGTCGAGGTGGGTGGAATGTGCATCTCCACCTTCGTAAGCC
ACACCGTAGCCGCCATCGTGCTCATGCCGCTCATTGTCGAGGTGGGTGGA
GTGGGCGTCAAGTCCGGCAACCCGGTCCTCCTGGGCATGGCCTCCGCCCT
CGCCGTCTCCGCCGGATGCGCGCTCCCCTTCTCTTCCTTCCCCAACGTGA
CCGCACTGCTGGTGACCGATGACTACCAGCGCAAGTACCTAGTGGTCCGA
GACTTCGCGAGCTCTGGGATCCCGATGTCCGTCGTGTCGGTGGCGATGGT
CTGCACGATCGGCTACGTGGGCGTCAAGTCCGGCAACCCGGTCCTCCTGG
GCATGGCCTCCGCCCTCGCCGTCTCCGCCGGATGCGCGCTCCCCTTCTCT
TCCTTCCCCAACGTGACCGCACTGCTGGTGACCGATGACTACCAGCGCAA
GTACCTAGTGGTCCGAGACTTCGCGAGCTCTGGGATCCCGATGTCCGTCG
TGTCGGTGGCGATGGTCTGCACGATCGGCTAC
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