mRNA_H-canaliculatus_F_contig1212.1839.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1212.1839.1 vs. uniprot
Match: A0A6H5K9Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Q8_9PHAE) HSP 1 Score: 181 bits (459), Expect = 2.690e-52 Identity = 100/178 (56.18%), Postives = 114/178 (64.04%), Query Frame = 1
Query: 10 MRCALLLLLNIVPSTGLLGSWTAARYRFATNRARAQRFCASAVSEMRGMASGGNESPNSLVGELLELFQGDFDNYDQVIEDREAGMLPGPGGGHEHIHCSLKPLDPALVPEQVAAATLGNGFFSDAEEGGEGEGCGTGRDT------RPLAVVAAKYYFNGDSNVVFRYRLYSFHPCP 525
M+ +LLLL +VPS GLL SWTA+R R + + QR C S S G G+E +++V ELL+LFQG+FDNYDQV+ DR+AGM PGPGGGHEHIHCSLK LDPA VP QVAA RPLAVVAAKYYFNGDSNVVFRYRLYSFH CP
Sbjct: 2 MQRVVLLLLQVVPSAGLLVSWTASRSRLSQ---KVQRSCTSVDSHTPGGGLSGDEPRDAMVSELLQLFQGEFDNYDQVVADRKAGMTPGPGGGHEHIHCSLKQLDPAEVPGQVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPLAVVAAKYYFNGDSNVVFRYRLYSFHACP 176
BLAST of mRNA_H-canaliculatus_F_contig1212.1839.1 vs. uniprot
Match: D7G1T2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1T2_ECTSI) HSP 1 Score: 167 bits (423), Expect = 1.030e-49 Identity = 94/179 (52.51%), Postives = 107/179 (59.78%), Query Frame = 1
Query: 10 MRCALLLLLNIVPSTGLLGSWTAARYRFATNRARAQRFCASAVSEMRGMASGGNESPNSLVGELLELFQGDFDNYDQVIEDREAGMLPGPGGGHEHIHCSLKPLDPALVPEQVAAATLGNGFFSDAEEGGEGEGCGTGRDTRPLAVVA-------AKYYFNGDSNVVFRYRLYSFHPCP 525
M+ +LLLL +VPS GLL SWTAAR R + + QR C S S G G+E +++V ELL+LFQG+FDNYDQV+ DR+AGM PGPGGGHEHIHCSLK LDPA VPEQVA AKYYFNGDSNVVFRYRLYSFH CP
Sbjct: 2 MQRVVLLLLQVVPSAGLLVSWTAARSRLSQ---KVQRSCTSVDSHTPGGGLSGDEPRDAMVSELLQLFQGEFDNYDQVVADRKAGMTPGPGGGHEHIHCSLKRLDPAEVPEQVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKYYFNGDSNVVFRYRLYSFHACP 177
BLAST of mRNA_H-canaliculatus_F_contig1212.1839.1 vs. uniprot
Match: K0TER5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TER5_THAOC) HSP 1 Score: 83.6 bits (205), Expect = 1.010e-15 Identity = 45/113 (39.82%), Postives = 58/113 (51.33%), Query Frame = 1
Query: 169 NESPNSLVGELLELFQGDFDNYDQVIEDREAGMLPGPGGGHEHIHCSLKPLDPALVPEQVAAATLGNGFFSDAEEGGEGEGCGTGRDTRPLAVVAAKYYFNGDSNVVFRYRLY 507
++S L FQGDFDNY+QV+ DR+ G+ PG GGGHEHIHC+L P P+ F D EG DTR + A +YFNG+ +FR+R Y
Sbjct: 70 DKSSGEYFRRLTSTFQGDFDNYNQVVLDRQHGLTPGAGGGHEHIHCTLVP-----CPD-----------FGDDAEG----------DTRRSRWILAAFYFNGNPQQIFRFRAY 156
BLAST of mRNA_H-canaliculatus_F_contig1212.1839.1 vs. uniprot
Match: A0A7S3LBP4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LBP4_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 5.050e-14 Identity = 32/49 (65.31%), Postives = 38/49 (77.55%), Query Frame = 1
Query: 175 SPNSLVGELLELFQGDFDNYDQVIEDREAGMLPGPGGGHEHIHCSLKPL 321
S L ELL FQGDFDNY+QV++DR+ G+LP GGGHEHIHCSL P+
Sbjct: 55 SKADLWEELLSRFQGDFDNYNQVVQDRKEGLLPREGGGHEHIHCSLVPV 103
BLAST of mRNA_H-canaliculatus_F_contig1212.1839.1 vs. uniprot
Match: A0A1E7FNR9_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FNR9_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 1.550e-12 Identity = 34/63 (53.97%), Postives = 44/63 (69.84%), Query Frame = 1
Query: 136 VSEMRGMASGGNESPNSLVGELL-ELFQGDFDNYDQVIEDREAGMLPGPGGGHEHIHCSLKPL 321
S + G+ G ES + V ++L E FQGDFDNY QV+EDR+ G+LP GGGHEH HC+L P+
Sbjct: 74 TSSVDGVGDGDGESSHEKVTKILSEWFQGDFDNYAQVVEDRKNGLLPREGGGHEHFHCTLVPV 136
BLAST of mRNA_H-canaliculatus_F_contig1212.1839.1 vs. uniprot
Match: A0A7S2PZJ6_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PZJ6_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 2.110e-12 Identity = 39/103 (37.86%), Postives = 50/103 (48.54%), Query Frame = 1
Query: 199 LLELFQGDFDNYDQVIEDREAGMLPGPGGGHEHIHCSLKPLDPALVPEQVAAATLGNGFFSDAEEGGEGEGCGTGRDTRPLAVVAAKYYFNGDSNVVFRYRLY 507
LL FQGDFDNY QVI DR + P GGGHEHIHC+L P V ++ R ++AA +YFNG+ +FR+R+Y
Sbjct: 63 LLSQFQGDFDNYHQVIRDRNHALAPADGGGHEHIHCTLVPCPHTAVTQEQ-------------------------RQNNDQWILAA-FYFNGNPRQIFRFRMY 139
BLAST of mRNA_H-canaliculatus_F_contig1212.1839.1 vs. uniprot
Match: B7G7Q1_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G7Q1_PHATC) HSP 1 Score: 72.8 bits (177), Expect = 4.680e-12 Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 1
Query: 199 LLELFQGDFDNYDQVIEDREAGMLPGPGGGHEHIHCSLKPL 321
LL+ FQGDFDNY+QVI DR+ G+LP GGGHEHIHCSL P+
Sbjct: 66 LLDRFQGDFDNYNQVIHDRKKGLLPREGGGHEHIHCSLVPV 106
BLAST of mRNA_H-canaliculatus_F_contig1212.1839.1 vs. uniprot
Match: A0A7S3DS98_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DS98_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 6.060e-12 Identity = 29/47 (61.70%), Postives = 37/47 (78.72%), Query Frame = 1
Query: 181 NSLVGELLELFQGDFDNYDQVIEDREAGMLPGPGGGHEHIHCSLKPL 321
+ L ++LE FQGDFDNY+QV+ DRE G LP GGGHE+IHC+L P+
Sbjct: 93 DQLWADMLERFQGDFDNYNQVVVDRENGKLPREGGGHENIHCTLVPV 139
BLAST of mRNA_H-canaliculatus_F_contig1212.1839.1 vs. uniprot
Match: A0A7S2XQK4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XQK4_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 2.480e-11 Identity = 45/122 (36.89%), Postives = 60/122 (49.18%), Query Frame = 1
Query: 145 MRGMASGGNESPNSLVGELLELFQGDFDNYDQVIEDREAGMLPGPGGGHEHIHCSLKPLDPALVPEQVAAATLGNGFFSDAEEGGEGEGCGTGRDTRPLAVVAAKYYFNGDSNVVFRYRLYS 510
MR + ++ SL LL FQGDFDNY QV+ DR MLP GGGHEHIHC+L P+ SD +E + +V+AA +YF+G +FR+R Y+
Sbjct: 66 MRSEEAENSKDGLSLWETLLGRFQGDFDNYRQVVRDRSNQMLPREGGGHEHIHCTLVPI------------------LSDEQE--------PDYNKMHYSVLAA-FYFDGLPQRIFRFRRYA 160
BLAST of mRNA_H-canaliculatus_F_contig1212.1839.1 vs. uniprot
Match: A0A1X6PC69_PORUM (Uncharacterized protein (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PC69_PORUM) HSP 1 Score: 67.0 bits (162), Expect = 7.910e-11 Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 1
Query: 190 VGELLELFQGDFDNYDQVIEDREAGMLPGPGGGHEHIHCSLKPL 321
+GE L F GDFDN++QV+E+R AG+ P GGGHEHIHC+L L
Sbjct: 11 LGEFLAWFAGDFDNHEQVVEERAAGLSPREGGGHEHIHCTLTSL 54 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1212.1839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1212.1839.1 >prot_H-canaliculatus_F_contig1212.1839.1 ID=prot_H-canaliculatus_F_contig1212.1839.1|Name=mRNA_H-canaliculatus_F_contig1212.1839.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=172bp MRCALLLLLNIVPSTGLLGSWTAARYRFATNRARAQRFCASAVSEMRGMAback to top mRNA from alignment at H-canaliculatus_F_contig1212:1833..3755- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1212.1839.1 ID=mRNA_H-canaliculatus_F_contig1212.1839.1|Name=mRNA_H-canaliculatus_F_contig1212.1839.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1923bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1212:1833..3755- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1212:1833..3755- >mRNA_H-canaliculatus_F_contig1212.1839.1 ID=mRNA_H-canaliculatus_F_contig1212.1839.1|Name=mRNA_H-canaliculatus_F_contig1212.1839.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1032bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1212:1833..3755- (Hapterophycus canaliculatus Oshoro5f female)back to top |