mRNA_H-canaliculatus_F_contig12117.1838.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12117.1838.1
Unique NamemRNA_H-canaliculatus_F_contig12117.1838.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12117.1838.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12117contigH-canaliculatus_F_contig12117:954..1790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size837
Cds size723
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12117.1838.1prot_H-canaliculatus_F_contig12117.1838.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12117 978..1700 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928925.6782732-UTR-H-canaliculatus_F_contig12117:953..9771622928925.6782732-UTR-H-canaliculatus_F_contig12117:953..977Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12117 954..977 +
1696845614.876318-UTR-H-canaliculatus_F_contig12117:953..9771696845614.876318-UTR-H-canaliculatus_F_contig12117:953..977Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12117 954..977 +
1622928925.7113583-UTR-H-canaliculatus_F_contig12117:1700..17901622928925.7113583-UTR-H-canaliculatus_F_contig12117:1700..1790Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12117 1701..1790 +
1696845614.8950326-UTR-H-canaliculatus_F_contig12117:1700..17901696845614.8950326-UTR-H-canaliculatus_F_contig12117:1700..1790Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12117 1701..1790 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928925.6933503-CDS-H-canaliculatus_F_contig12117:977..17001622928925.6933503-CDS-H-canaliculatus_F_contig12117:977..1700Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12117 978..1700 +
1696845614.886775-CDS-H-canaliculatus_F_contig12117:977..17001696845614.886775-CDS-H-canaliculatus_F_contig12117:977..1700Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12117 978..1700 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12117.1838.1

>prot_H-canaliculatus_F_contig12117.1838.1 ID=prot_H-canaliculatus_F_contig12117.1838.1|Name=mRNA_H-canaliculatus_F_contig12117.1838.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=241bp
MLSRFPPCYRPWHSTRCNGGGLDGAYWQEGGRLMTRGLYFCSCFSFRFVK
QTVRGTLPAVDLPTRAACCCCYIGMRDATLSKPQHALAHTRIGTRTQTCL
PLPFAAASSGTASASRARSAEATILRSSGRVWSVNCLTSKYFIRLRFRSC
SNPFPRDTCAGNRRLLCQQPRQCGQPLARGSRRGRRRRRRRQQQRLRALH
VRRGQRRNNRSRRLQRRVELGRHGLHHVPFRAGRRPQRAP*
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mRNA from alignment at H-canaliculatus_F_contig12117:954..1790+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12117.1838.1 ID=mRNA_H-canaliculatus_F_contig12117.1838.1|Name=mRNA_H-canaliculatus_F_contig12117.1838.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=837bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12117:954..1790+ (Hapterophycus canaliculatus Oshoro5f female)
GGAAGGGAGGGAGGCACGGCGGCGATGCTCTCGCGTTTCCCGCCCTGCTA
TCGACCATGGCATTCAACCAGATGTAACGGGGGGGGATTGGACGGGGCGT
ATTGGCAAGAAGGCGGGCGCTTGATGACCCGGGGGCTCTACTTTTGCTCC
TGCTTTTCGTTCCGCTTCGTGAAACAAACCGTTCGTGGAACCCTGCCTGC
AGTCGACCTGCCGACGAGGGCGGCGTGCTGCTGCTGCTACATCGGCATGC
GTGATGCCACCCTTTCGAAACCTCAGCACGCGCTCGCCCATACACGCATA
GGGACACGCACGCAGACATGCTTGCCTCTGCCCTTCGCCGCTGCTTCCTC
CGGCACCGCTTCTGCTAGCCGGGCTCGTAGCGCTGAGGCTACGATTCTTC
GCTCCTCTGGCCGTGTTTGGAGTGTCAACTGTCTCACGTCGAAGTATTTC
ATACGTCTTCGTTTCCGGTCGTGCTCCAACCCCTTTCCAAGGGATACATG
CGCAGGGAACCGCCGGCTCCTATGCCAACAGCCTCGGCAGTGTGGACAAC
CTCTCGCAAGGGGGTCTCGGCGGGGGCGGCGGCGGCGGCGGCGGCGGCAG
CAGCAACGGCTACGGGCACTACATGTACGGCGGGGGCAGCGCCGGAACAA
CCGCAGCCGGCGCCTCCAGCGTCGGGTCGAGCTTGGGCGGCACGGCCTTC
ATCACGTCCCCTTCCGAGCCGGAAGACGACCGCAGCGGGCGCCGTAATGC
CGGACGCCTTCTGTCCGGCTGGTTCAGGTGGTGGGGCAGGAGAGGAGCCG
CAGAGGCGGAGGCTCGGGAGGGGCCGGGGAGAGCGAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12117:954..1790+

>mRNA_H-canaliculatus_F_contig12117.1838.1 ID=mRNA_H-canaliculatus_F_contig12117.1838.1|Name=mRNA_H-canaliculatus_F_contig12117.1838.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1446bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12117:954..1790+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTCTCGCGTTTCCCGCCCTGCTATCGACCATGGCATTCAACCAGATG
TAACGGGGGGGGATTGGACGGGGCGTATTGGCAAGAAGGCGGGCGCTTGA
TGACCCGGGGGCTCTACTTTTGCTCCTGCTTTTCGTTCCGCTTCGTGAAA
CAAACCGTTCGTGGAACCCTGCCTGCAGTCGACCTGCCGACGAGGGCGGC
GTGCTGCTGCTGCTACATCGGCATGCGTGATGCCACCCTTTCGAAACCTC
AGCACGCGCTCGCCCATACACGCATAGGGACACGCACGCAGACATGCTTG
CCTCTGCCCTTCGCCGCTGCTTCCTCCGGCACCGCTTCTGCTAGCCGGGC
TCGTAGCGCTGAGGCTACGATTCTTCGCTCCTCTGGCCGTGTTTGGAGTG
TCAACTGTCTCACGTCGAAGTATTTCATACGTCTTCGTTTCCGGTCGTGC
TCCAACCCCTTTCCAAGGGATACATGCGCAGGGAACCGCCGGCTCCTATG
CCAACAGCCTCGGCAGTGTGGACAACCTCTCGCAAGGGGGTCTCGGCGGG
GGCGGCGGCGGCGGCGGCGGCGGCAGCAGCAACGGCTACGGGCACTACAT
GTACGGCGGGGGCAGCGCCGGAACAACCGCAGCCGGCGCCTCCAGCGTCG
GGTCGAGCTTGGGCGGCACGGCCTTCATCACGTCCCCTTCCGAGCCGGAA
GACGACCGCAGCGGGCGCCGTAAATGCTCTCGCGTTTCCCGCCCTGCTAT
CGACCATGGCATTCAACCAGATGTAACGGGGGGGGATTGGACGGGGCGTA
TTGGCAAGAAGGCGGGCGCTTGATGACCCGGGGGCTCTACTTTTGCTCCT
GCTTTTCGTTCCGCTTCGTGAAACAAACCGTTCGTGGAACCCTGCCTGCA
GTCGACCTGCCGACGAGGGCGGCGTGCTGCTGCTGCTACATCGGCATGCG
TGATGCCACCCTTTCGAAACCTCAGCACGCGCTCGCCCATACACGCATAG
GGACACGCACGCAGACATGCTTGCCTCTGCCCTTCGCCGCTGCTTCCTCC
GGCACCGCTTCTGCTAGCCGGGCTCGTAGCGCTGAGGCTACGATTCTTCG
CTCCTCTGGCCGTGTTTGGAGTGTCAACTGTCTCACGTCGAAGTATTTCA
TACGTCTTCGTTTCCGGTCGTGCTCCAACCCCTTTCCAAGGGATACATGC
GCAGGGAACCGCCGGCTCCTATGCCAACAGCCTCGGCAGTGTGGACAACC
TCTCGCAAGGGGGTCTCGGCGGGGGCGGCGGCGGCGGCGGCGGCGGCAGC
AGCAACGGCTACGGGCACTACATGTACGGCGGGGGCAGCGCCGGAACAAC
CGCAGCCGGCGCCTCCAGCGTCGGGTCGAGCTTGGGCGGCACGGCCTTCA
TCACGTCCCCTTCCGAGCCGGAAGACGACCGCAGCGGGCGCCGTAA
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