mRNA_H-canaliculatus_F_contig12117.1837.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12117.1837.1
Unique NamemRNA_H-canaliculatus_F_contig12117.1837.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12117.1837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12117contigH-canaliculatus_F_contig12117:203..925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size723
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12117.1837.1prot_H-canaliculatus_F_contig12117.1837.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12117 461..844 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928925.5908747-UTR-H-canaliculatus_F_contig12117:202..4601622928925.5908747-UTR-H-canaliculatus_F_contig12117:202..460Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12117 203..460 +
1696845614.845873-UTR-H-canaliculatus_F_contig12117:202..4601696845614.845873-UTR-H-canaliculatus_F_contig12117:202..460Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12117 203..460 +
1622928925.6209598-UTR-H-canaliculatus_F_contig12117:844..9251622928925.6209598-UTR-H-canaliculatus_F_contig12117:844..925Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12117 845..925 +
1696845614.866532-UTR-H-canaliculatus_F_contig12117:844..9251696845614.866532-UTR-H-canaliculatus_F_contig12117:844..925Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12117 845..925 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928925.6051435-CDS-H-canaliculatus_F_contig12117:460..8441622928925.6051435-CDS-H-canaliculatus_F_contig12117:460..844Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12117 461..844 +
1696845614.8563542-CDS-H-canaliculatus_F_contig12117:460..8441696845614.8563542-CDS-H-canaliculatus_F_contig12117:460..844Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12117 461..844 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12117.1837.1

>prot_H-canaliculatus_F_contig12117.1837.1 ID=prot_H-canaliculatus_F_contig12117.1837.1|Name=mRNA_H-canaliculatus_F_contig12117.1837.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=128bp
MGRCLGWNGLVIHRRARAPVGESLAVYSAHVLACLVSCDRRSCSRRKRPA
LRHVRLERRAKTDDRRQTLLGLGLELGCAVKSEKNWNFFNCCGGVRTGLY
HSAAGGHESTATGCCSKAVPKLCQWSP*
back to top

mRNA from alignment at H-canaliculatus_F_contig12117:203..925+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12117.1837.1 ID=mRNA_H-canaliculatus_F_contig12117.1837.1|Name=mRNA_H-canaliculatus_F_contig12117.1837.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=723bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12117:203..925+ (Hapterophycus canaliculatus Oshoro5f female)
CACTCCCCGAGGGCGGCAGAATACTTCGGCAGCTGGCAAGGTGCGTGCGG
GCCGGTTGGCCAATAGGCGGAGGGGGATGGCCGCCTCTCGGGTCCGGGGC
GCGCGTGCGCGGGCGAGTGCGGGTGAGCCGACGGCTCGTCTCGGTGTCGG
GGATGCCTCCACGCCTCCCCGCCCTTTCCCGTCTTGCTTCTCCCGGCCGC
TGTTTCTCGAGCGCGCCGTCCCAGGGCAGCGCGAAGGATTGGGTCCGTAC
GGGACGGGATGGGACGATGTTTGGGGTGGAATGGTTTGGTGATACACCGC
CGTGCACGTGCACCGGTCGGCGAGTCCCTCGCCGTGTACTCCGCGCATGT
TCTCGCGTGTCTCGTGTCCTGTGACCGACGGTCCTGCTCGCGACGCAAGA
GACCAGCCCTTCGGCACGTTCGCCTCGAGCGGCGCGCGAAGACAGATGAC
AGACGGCAGACGCTCCTCGGCCTTGGCCTTGAACTTGGTTGTGCGGTGAA
ATCGGAAAAAAATTGGAATTTCTTCAACTGCTGTGGTGGAGTTCGGACGG
GGCTGTATCATTCCGCAGCGGGAGGGCACGAGAGCACCGCGACGGGTTGC
TGTTCCAAGGCTGTACCAAAGCTGTGCCAATGGTCACCGTGACGCGGGCT
CCGTCCGCTAATTGAAATACTTCAGGCGAAGCTCTGATCGCTCGCTTGAC
ACTTGGCATGGCACGGGGGCACG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12117:203..925+

>mRNA_H-canaliculatus_F_contig12117.1837.1 ID=mRNA_H-canaliculatus_F_contig12117.1837.1|Name=mRNA_H-canaliculatus_F_contig12117.1837.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=768bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12117:203..925+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGACGATGTTTGGGGTGGAATGGTTTGGTGATACACCGCCGTGCACG
TGCACCGGTCGGCGAGTCCCTCGCCGTGTACTCCGCGCATGTTCTCGCGT
GTCTCGTGTCCTGTGACCGACGGTCCTGCTCGCGACGCAAGAGACCAGCC
CTTCGGCACGTTCGCCTCGAGCGGCGCGCGAAGACAGATGACAGACGGCA
GACGCTCCTCGGCCTTGGCCTTGAACTTGGTTGTGCGGTGAAATCGGAAA
AAAATTGGAATTTCTTCAACTGCTGTGGTGGAGTTCGGACGGGGCTGTAT
CATTCCGCAGCGGGAGGGCACGAGAGCACCGCGACGGGTTGCTGTTCCAA
GGCTGTACCAAAGCTGTGCCAATGGTCACCGTGAATGGGACGATGTTTGG
GGTGGAATGGTTTGGTGATACACCGCCGTGCACGTGCACCGGTCGGCGAG
TCCCTCGCCGTGTACTCCGCGCATGTTCTCGCGTGTCTCGTGTCCTGTGA
CCGACGGTCCTGCTCGCGACGCAAGAGACCAGCCCTTCGGCACGTTCGCC
TCGAGCGGCGCGCGAAGACAGATGACAGACGGCAGACGCTCCTCGGCCTT
GGCCTTGAACTTGGTTGTGCGGTGAAATCGGAAAAAAATTGGAATTTCTT
CAACTGCTGTGGTGGAGTTCGGACGGGGCTGTATCATTCCGCAGCGGGAG
GGCACGAGAGCACCGCGACGGGTTGCTGTTCCAAGGCTGTACCAAAGCTG
TGCCAATGGTCACCGTGA
back to top