mRNA_H-canaliculatus_F_contig121.1820.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig121.1820.1 vs. uniprot
Match: A0A6H5KJV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJV7_9PHAE) HSP 1 Score: 431 bits (1107), Expect = 8.490e-142 Identity = 206/267 (77.15%), Postives = 226/267 (84.64%), Query Frame = 2
Query: 1223 RWRRFVGLGDDICGGDGKLWQPSPVRLDHPRGSSPPWLQFRGRFGGTRCIPWEGFWKCQGEPPRRCSAEAKYRSLLEEGLVPDRGVRLGPSRRMLHGNPDRGVWLARHRQTETRVPIFNTWTGVPGLSSSRPRNEDPPRQARVATGRGWLADWGFLRDVGGGSTDAKGWSYHSGQTGHADTGAAGDPKKGSLLAHRSRGRVWFRVAASPEVAREVEEACRRDHGRHPRRAIALAALDVAGRGEAVTCAALLETLQVGIHGRGSGGGS 2023
+WRRFVGLGDDICGGDGK+W+P V+LDHPRGS PPWLQFRGR+GGTRCI E FW+C GEPPRRCSAEAKYRS+LEEGLVPDRGVRLGPSRRMLHGN DRGVWL RHRQTETRVP NTWTGVPGLSSSRPR++DPP+ TGR WLA WGFLRD+ GGSTD++GWSYHS Q +ADTG AG PK +LAHRSRGRVWFRVAA+PEVAREVEEA RRD+GRHP RA ALAALDVAG GE VT A+LL TL G+ G S G+
Sbjct: 13 KWRRFVGLGDDICGGDGKVWRPHAVQLDHPRGSKPPWLQFRGRYGGTRCIMSEAFWRCGGEPPRRCSAEAKYRSVLEEGLVPDRGVRLGPSRRMLHGNGDRGVWLERHRQTETRVPFLNTWTGVPGLSSSRPRDQDPPK----TTGRVWLAGWGFLRDLDGGSTDSRGWSYHSSQADYADTGIAGAPKNKGILAHRSRGRVWFRVAATPEVAREVEEARRRDNGRHPPRAFALAALDVAGHGETVTAASLLRTLGDGVRGASSNTGA 275
BLAST of mRNA_H-canaliculatus_F_contig121.1820.1 vs. uniprot
Match: A0A6H5KJP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJP6_9PHAE) HSP 1 Score: 271 bits (694), Expect = 1.430e-81 Identity = 174/253 (68.77%), Postives = 190/253 (75.10%), Query Frame = 2
Query: 149 MSTGNETLKERLLASFCPILRFDAAEKHYPVSAESFISSSLLLRSRRPVQQAARSNQQGDDVDVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIQERQDEMQQLHGQACGECGRKHGWMLPSQGDWTLVRLPPGVQSWSTATLLEEQRRDT-LHEFSRLEPHSCVWEGEGEDLSAVPCYAFADLLDPSAVAPFIRRAGMGPVYELKYAFLYGFNGTTFAIPGVSVGVHTGDLEHVTIRVDARRMM 904
M T LK +LLA F P+++FDA EKHYPVS E+FISSSLLLR RP G + +E XXXXXXXXXXXXXXXXXXXXXXXXX Q +Q+ M Q ACGECG++ GW PS+G W LV LP G QSWSTATLLE Q RD L+EF RLEPHSCVW G+ DLS VPCYAFAD LDPSAVAPFIRRAG+GPVYELKYAFLYG+NGTTFAIPG SVGVHTGDLEHVTIRVDARRMM
Sbjct: 1 MDTRKGELKAQLLAYFSPVVKFDAGEKHYPVSVETFISSSLLLR--RP------KTPGGIEQTMEQINLDDXXXXXXXXXXXXXXXXXXXXXXXXXGSAAHDQHQQERMHQ----ACGECGQRQGWRFPSKGGWVLVALPLGAQSWSTATLLEAQLRDKGLNEF-RLEPHSCVWGGQERDLSKVPCYAFADPLDPSAVAPFIRRAGVGPVYELKYAFLYGYNGTTFAIPGTSVGVHTGDLEHVTIRVDARRMM 240
BLAST of mRNA_H-canaliculatus_F_contig121.1820.1 vs. uniprot
Match: D7G814_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G814_ECTSI) HSP 1 Score: 267 bits (682), Expect = 1.600e-81 Identity = 116/139 (83.45%), Postives = 127/139 (91.37%), Query Frame = 2
Query: 1223 RWRRFVGLGDDICGGDGKLWQPSPVRLDHPRGSSPPWLQFRGRFGGTRCIPWEGFWKCQGEPPRRCSAEAKYRSLLEEGLVPDRGVRLGPSRRMLHGNPDRGVWLARHRQTETRVPIFNTWTGVPGLSSSRPRNEDPPR 1639
+WRRFVGLGDDICGGDGK+W+P V+LDHPRGS PPWL+FRGR+GGTRCI E FW+C GEPPRRCSAEAKYRS+LEEGLVPDRGVRLGPSRRMLHGN DRGVWL RHRQTETRVP NTWTGVPGL SSRPR++DPP+
Sbjct: 9 KWRRFVGLGDDICGGDGKVWRPHAVQLDHPRGSEPPWLRFRGRYGGTRCITSEAFWRCGGEPPRRCSAEAKYRSVLEEGLVPDRGVRLGPSRRMLHGNGDRGVWLERHRQTETRVPFLNTWTGVPGLGSSRPRDQDPPK 147
BLAST of mRNA_H-canaliculatus_F_contig121.1820.1 vs. uniprot
Match: A0A836C7Q3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7Q3_9STRA) HSP 1 Score: 144 bits (364), Expect = 9.990e-32 Identity = 98/297 (33.00%), Postives = 139/297 (46.80%), Query Frame = 2
Query: 698 PCYAFADLLDPSAVAPFIRRAGMGPVYELKYAFLYGFNGTTFAIPGV-------SVGVHTGDLEHVTIRVDARRMMLLEA---------------FFAAHSTGEGKWVPSKEFYRQVEAWEAGAYPGDAERASATSREFLEMRSPASPLTDSSRNAGDASIGSGTAGVEAQGXXXXXXERIVVYPARNGHASYHAPRRWRRFV------GLGDDICGGDGKLWQPSPVRLDHPRGSSPPWLQFRGRFGGTRCIPWEGFWKCQGEPPRRCSAEAK--YRSLLEEGLVPDRGVRLGPSR 1498
P Y +A L P+AVAP +R A +G V +LKYA LY +NG+TF +P + +G H GDLEHV +RVDA +L +++ HSTGEGK+V S A + L+ S ++ L ++ G R + Y A HA+Y PR WRRF G GDD+C G W P V +D+P PPWL+F G++G + + +W+ Q E R+ + Y S++EEGLVP+R +RLG +R
Sbjct: 153 PVYGYAKQLPPTAVAPCLRGA-LGRVADLKYAMLYTYNGSTFRVPPLPPLRPHGGIGSHLGDLEHVLVRVDADSGRVLXXXXXXXXXXXXXXXXMYYSCHSTGEGKFVASDYLPSVAAALNSRXXXXXXXXXXXXXXXELDPDSDSAQLPSTAPRLQFFDNG----------------VRPITYAAAGSHANYPEPRSWRRFAIVSWLPGFGDDLCSDRGAEWHPDVVVIDNPVCRYPPWLRFTGQYGHSANFRQQTWWRVQSEHARQIAPTPANYYHSVVEEGLVPNRQLRLGLTR 432 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig121.1820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig121.1820.1 >prot_H-canaliculatus_F_contig121.1820.1 ID=prot_H-canaliculatus_F_contig121.1820.1|Name=mRNA_H-canaliculatus_F_contig121.1820.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=691bp MSTGNETLKERLLASFCPILRFDAAEKHYPVSAESFISSSLLLRSRRPVQback to top mRNA from alignment at H-canaliculatus_F_contig121:29058..39436+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig121.1820.1 ID=mRNA_H-canaliculatus_F_contig121.1820.1|Name=mRNA_H-canaliculatus_F_contig121.1820.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=10379bp|location=Sequence derived from alignment at H-canaliculatus_F_contig121:29058..39436+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig121:29058..39436+ >mRNA_H-canaliculatus_F_contig121.1820.1 ID=mRNA_H-canaliculatus_F_contig121.1820.1|Name=mRNA_H-canaliculatus_F_contig121.1820.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=4146bp|location=Sequence derived from alignment at H-canaliculatus_F_contig121:29058..39436+ (Hapterophycus canaliculatus Oshoro5f female)back to top |