mRNA_H-canaliculatus_F_contig12099.1813.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12099.1813.1
Unique NamemRNA_H-canaliculatus_F_contig12099.1813.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12099.1813.1 vs. uniprot
Match: A0A6H5KIY4_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY4_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.120e-20
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:   13 VSVDMGAAWIHGTTKNPITALCEKFSLSLFNTGSPTLMVDHDGR 144
            VSVDMGAAWIHGTTKNPITALCEKFSL LFNTGSPT+MVDHDGR
Sbjct: 1012 VSVDMGAAWIHGTTKNPITALCEKFSLGLFNTGSPTVMVDHDGR 1055
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12099.1813.1 vs. uniprot
Match: D8LQQ1_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQQ1_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 1.130e-20
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:   13 VSVDMGAAWIHGTTKNPITALCEKFSLSLFNTGSPTLMVDHDGR 144
            VSVDMGAAWIHGTTKNPITALCEKFSL LFNTGSPT+MVDHDGR
Sbjct:  801 VSVDMGAAWIHGTTKNPITALCEKFSLGLFNTGSPTVMVDHDGR 844
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12099.1813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KIY4_9PHAE1.120e-2095.45PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
D8LQQ1_ECTSI1.130e-2095.45PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12099contigH-canaliculatus_F_contig12099:131..274 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue4.7e-15
Seed eggNOG ortholog2880.D8LQQ1
KEGG koko:K11450
KEGG Pathwayko04714,map04714
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006325,GO:0006464,GO:0006476,GO:0006479,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0008213,GO:0009987,GO:0016043,GO:0016569,GO:0016570,GO:0016571,GO:0016575,GO:0018022,GO:0018193,GO:0018205,GO:0019538,GO:0022622,GO:0032259,GO:0032501,GO:0032502,GO:0034968,GO:0035601,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0048364,GO:0048731,GO:0048856,GO:0051276,GO:0051568,GO:0071704,GO:0071840,GO:0098732,GO:0099402,GO:1901564
EggNOG free text desc.SET domain
EggNOG OGsCOG1231@1,COG2940@1,KOG0029@2759,KOG1084@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size120
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928921.8931751-CDS-H-canaliculatus_F_contig12099:130..2501622928921.8931751-CDS-H-canaliculatus_F_contig12099:130..250Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12099 131..250 -
1696845613.1668632-CDS-H-canaliculatus_F_contig12099:130..2501696845613.1668632-CDS-H-canaliculatus_F_contig12099:130..250Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12099 131..250 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928921.9061108-UTR-H-canaliculatus_F_contig12099:250..2741622928921.9061108-UTR-H-canaliculatus_F_contig12099:250..274Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12099 251..274 -
1696845613.1788805-UTR-H-canaliculatus_F_contig12099:250..2741696845613.1788805-UTR-H-canaliculatus_F_contig12099:250..274Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12099 251..274 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12099.1813.1prot_H-canaliculatus_F_contig12099.1813.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12099 131..250 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12099.1813.1

>prot_H-canaliculatus_F_contig12099.1813.1 ID=prot_H-canaliculatus_F_contig12099.1813.1|Name=mRNA_H-canaliculatus_F_contig12099.1813.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=40bp
MGAAWIHGTTKNPITALCEKFSLSLFNTGSPTLMVDHDGR
back to top

mRNA from alignment at H-canaliculatus_F_contig12099:131..274-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12099.1813.1 ID=mRNA_H-canaliculatus_F_contig12099.1813.1|Name=mRNA_H-canaliculatus_F_contig12099.1813.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=144bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12099:131..274- (Hapterophycus canaliculatus Oshoro5f female)
TCCCCCCCGCAGGTGAGCGTGGACATGGGCGCGGCCTGGATCCACGGCAC
GACGAAGAATCCCATCACGGCCCTCTGCGAGAAGTTCTCCCTGTCGCTGT
TCAACACCGGCAGCCCTACTCTGATGGTCGACCACGACGGCCGG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12099:131..274-

>mRNA_H-canaliculatus_F_contig12099.1813.1 ID=mRNA_H-canaliculatus_F_contig12099.1813.1|Name=mRNA_H-canaliculatus_F_contig12099.1813.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=240bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12099:131..274- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGCGCGGCCTGGATCCACGGCACGACGAAGAATCCCATCACGGCCCT
CTGCGAGAAGTTCTCCCTGTCGCTGTTCAACACCGGCAGCCCTACTCTGA
TGGTCGACCACGACGGCCGGATGGGCGCGGCCTGGATCCACGGCACGACG
AAGAATCCCATCACGGCCCTCTGCGAGAAGTTCTCCCTGTCGCTGTTCAA
CACCGGCAGCCCTACTCTGATGGTCGACCACGACGGCCGG
back to top