mRNA_H-canaliculatus_F_contig12089.1808.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12089.1808.1
Unique NamemRNA_H-canaliculatus_F_contig12089.1808.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12089.1808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12089contigH-canaliculatus_F_contig12089:3393..3637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size233
Cds size153
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12089.1808.1prot_H-canaliculatus_F_contig12089.1808.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12089 3393..3558 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928920.912093-CDS-H-canaliculatus_F_contig12089:3392..34561622928920.912093-CDS-H-canaliculatus_F_contig12089:3392..3456Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12089 3393..3456 +
1696845612.995673-CDS-H-canaliculatus_F_contig12089:3392..34561696845612.995673-CDS-H-canaliculatus_F_contig12089:3392..3456Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12089 3393..3456 +
1622928920.9226155-CDS-H-canaliculatus_F_contig12089:3469..35581622928920.9226155-CDS-H-canaliculatus_F_contig12089:3469..3558Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12089 3470..3558 +
1696845613.008621-CDS-H-canaliculatus_F_contig12089:3469..35581696845613.008621-CDS-H-canaliculatus_F_contig12089:3469..3558Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12089 3470..3558 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928920.9343913-UTR-H-canaliculatus_F_contig12089:3558..36371622928920.9343913-UTR-H-canaliculatus_F_contig12089:3558..3637Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12089 3559..3637 +
1696845613.0190082-UTR-H-canaliculatus_F_contig12089:3558..36371696845613.0190082-UTR-H-canaliculatus_F_contig12089:3558..3637Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12089 3559..3637 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12089.1808.1

>prot_H-canaliculatus_F_contig12089.1808.1 ID=prot_H-canaliculatus_F_contig12089.1808.1|Name=mRNA_H-canaliculatus_F_contig12089.1808.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=51bp
ISQKHRVGYWNWHKAHRTRLWGYLPPVLLYGYPTEPTLGYFGKFAFCRAA
*
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mRNA from alignment at H-canaliculatus_F_contig12089:3393..3637+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12089.1808.1 ID=mRNA_H-canaliculatus_F_contig12089.1808.1|Name=mRNA_H-canaliculatus_F_contig12089.1808.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=245bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12089:3393..3637+ (Hapterophycus canaliculatus Oshoro5f female)
ATCTCACAGAAGCATAGGGTAGGGTATTGGAACTGGCACAAAGCGCACAG
AACTCGTCTGTGGGGTACTACACAGAGGGTACCTACCTCCGGTATTGCTC
TATGGTTACCCTACAGAACCGACCCTTGGTTATTTCGGTAAGTTCGCATT
TTGTCGCGCAGCGTAAGGCGGTGCTCTGAGCGGGAAATTGCTTCCGAGCA
GTATGGCTGGGAATTGAACCCGAACGATTTGCAAGACAGTGACGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12089:3393..3637+

>mRNA_H-canaliculatus_F_contig12089.1808.1 ID=mRNA_H-canaliculatus_F_contig12089.1808.1|Name=mRNA_H-canaliculatus_F_contig12089.1808.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=306bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12089:3393..3637+ (Hapterophycus canaliculatus Oshoro5f female)
ATCTCACAGAAGCATAGGGTAGGGTATTGGAACTGGCACAAAGCGCACAG
AACTCGTCTGTGGGATCTCACAGAAGCATAGGGTAGGGTATTGGAACTGG
CACAAAGCGCACAGAACTCGTCTGTGGGGGTACCTACCTCCGGTATTGCT
CTATGGTTACCCTACAGAACCGACCCTTGGTTATTTCGGTAAGTTCGCAT
TTTGTCGCGCAGCGTAAGGTACCTACCTCCGGTATTGCTCTATGGTTACC
CTACAGAACCGACCCTTGGTTATTTCGGTAAGTTCGCATTTTGTCGCGCA
GCGTAA
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