mRNA_H-canaliculatus_F_contig12088.1806.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12088.1806.1
Unique NamemRNA_H-canaliculatus_F_contig12088.1806.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12088.1806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12088contigH-canaliculatus_F_contig12088:2402..3786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1385
Cds size735
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12088.1806.1prot_H-canaliculatus_F_contig12088.1806.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12088 2993..3727 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928920.7571213-UTR-H-canaliculatus_F_contig12088:2401..29921622928920.7571213-UTR-H-canaliculatus_F_contig12088:2401..2992Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12088 2402..2992 +
1696845612.9359467-UTR-H-canaliculatus_F_contig12088:2401..29921696845612.9359467-UTR-H-canaliculatus_F_contig12088:2401..2992Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12088 2402..2992 +
1622928920.8121974-UTR-H-canaliculatus_F_contig12088:3727..37861622928920.8121974-UTR-H-canaliculatus_F_contig12088:3727..3786Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12088 3728..3786 +
1696845612.954679-UTR-H-canaliculatus_F_contig12088:3727..37861696845612.954679-UTR-H-canaliculatus_F_contig12088:3727..3786Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12088 3728..3786 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928920.7729127-CDS-H-canaliculatus_F_contig12088:2992..37271622928920.7729127-CDS-H-canaliculatus_F_contig12088:2992..3727Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12088 2993..3727 +
1696845612.944854-CDS-H-canaliculatus_F_contig12088:2992..37271696845612.944854-CDS-H-canaliculatus_F_contig12088:2992..3727Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12088 2993..3727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12088.1806.1

>prot_H-canaliculatus_F_contig12088.1806.1 ID=prot_H-canaliculatus_F_contig12088.1806.1|Name=mRNA_H-canaliculatus_F_contig12088.1806.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=245bp
MAPLPTTRVASSNSVPLDTCPPATSPPPSSSLDDRRNCVAAPAASLTSLA
AHPVPTAQTPSSTDSVLLLSPLSQEKGSEQPATPRFSSLRAAGTAPSHEQ
VLRGGSPLAPIDRPGTTASVHLAQRSANDTLHRYRSVTPMRLLQLRFVLR
LSRRSTTLRQALRLPRRSTILRQALRRPHRSTILLQALRRPQHCLPNGFA
DIFGRQSSSSTLTTKRARASPRLSLFLPAEGWFGWARRSTLCTA*
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mRNA from alignment at H-canaliculatus_F_contig12088:2402..3786+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12088.1806.1 ID=mRNA_H-canaliculatus_F_contig12088.1806.1|Name=mRNA_H-canaliculatus_F_contig12088.1806.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1385bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12088:2402..3786+ (Hapterophycus canaliculatus Oshoro5f female)
CAACGGCGACCACCGACGCGTCCGGCGCCCTGCAACACACGCAAGGACGG
CAGCAGCTCTTGCCCGTACAATCAACACGACCACAGCACCGGTCGTCGTG
CCACTTCTGGCAATCCCGGCAACACCACCATCGCTGCAATCGGGGGAACA
CCCTTCTTCCGGTCTTCCTGGACGCGCTGCCAATCAGAGCCGGTCGGCTT
CTACAGCCAACAGCTCCGGTTCTCCTCCGCGGGGTGATGGTTCGCATTCT
CTCTCCAGGCAAGTCGATGGTCGTGCGAGTGCTGCTGTTGATGTCGCCAA
TTCTTCGCCCGCCTATGCCCGTCACGATGTCCCTTCACAGAGTTTTTTTC
TGCAGATGTTTCAAATTGTTGCCCTTCTATGGTTTCTCGCCCCGCTTCTC
GACGAAACCATGACATTCACCGCTAGTCCTGGAAATGACTCCTCTAGTTC
GGCGGTTGATTTGTGGTGTGGGCGCTCGAGAAGAACGCGACCGACACCAG
TCAGCTCACTTGGTCGTTTTCGGGTTTGGTAGAAAATAGATCGTCGCAAA
CCCCCGCTGTCGCGGAAGAGCCTGCTGGTCTTGTCAGCACAATGGCTCCT
CTTCCGACAACGCGCGTTGCTTCTAGTAACAGTGTCCCCCTGGACACCTG
TCCTCCCGCCACCTCTCCGCCGCCTTCATCTTCTCTTGATGACCGCCGCA
ACTGTGTAGCTGCTCCGGCAGCGTCTCTAACTTCCTTAGCAGCACATCCT
GTGCCGACAGCACAAACACCGTCGAGTACGGATAGTGTTCTTCTTTTGTC
TCCTTTGTCACAGGAAAAGGGATCTGAGCAACCCGCGACGCCTCGCTTTT
CGAGTTTGCGTGCCGCCGGTACGGCCCCTTCACACGAACAGGTCTTGCGT
GGTGGTTCGCCCCTCGCACCTATCGACCGACCGGGCACTACGGCTTCTGT
TCACTTGGCGCAACGGAGCGCCAACGACACACTTCACCGCTACAGATCAG
TGACGCCGATGCGTCTGCTCCAGCTCCGCTTTGTTCTACGTCTTTCTCGC
CGGTCAACAACTCTTCGCCAAGCTCTACGTCTTCCTCGCCGGTCGACAAT
TCTTCGCCAAGCTCTACGTCGTCCACACCGGTCGACCATTCTTCTCCAAG
CTCTACGTCGTCCTCAGCATTGTCTACCAAACGGCTTCGCGGACATCTTT
GGTCGACAAAGTTCGTCATCTACTCTGACCACAAAGCGCGCGAGAGCATC
ACCACGGTTATCACTCTTCCTCCCGGCCGAAGGTTGGTTTGGGTGGGCTC
GACGTTCAACCCTCTGTACGGCCTGAGTCGAGTTTAGTACATTTCCCCGC
AAACTCCCGCGTCAAGCCGGTGTTTGTTCGTGCAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12088:2402..3786+

>mRNA_H-canaliculatus_F_contig12088.1806.1 ID=mRNA_H-canaliculatus_F_contig12088.1806.1|Name=mRNA_H-canaliculatus_F_contig12088.1806.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1470bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12088:2402..3786+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCTCCTCTTCCGACAACGCGCGTTGCTTCTAGTAACAGTGTCCCCCT
GGACACCTGTCCTCCCGCCACCTCTCCGCCGCCTTCATCTTCTCTTGATG
ACCGCCGCAACTGTGTAGCTGCTCCGGCAGCGTCTCTAACTTCCTTAGCA
GCACATCCTGTGCCGACAGCACAAACACCGTCGAGTACGGATAGTGTTCT
TCTTTTGTCTCCTTTGTCACAGGAAAAGGGATCTGAGCAACCCGCGACGC
CTCGCTTTTCGAGTTTGCGTGCCGCCGGTACGGCCCCTTCACACGAACAG
GTCTTGCGTGGTGGTTCGCCCCTCGCACCTATCGACCGACCGGGCACTAC
GGCTTCTGTTCACTTGGCGCAACGGAGCGCCAACGACACACTTCACCGCT
ACAGATCAGTGACGCCGATGCGTCTGCTCCAGCTCCGCTTTGTTCTACGT
CTTTCTCGCCGGTCAACAACTCTTCGCCAAGCTCTACGTCTTCCTCGCCG
GTCGACAATTCTTCGCCAAGCTCTACGTCGTCCACACCGGTCGACCATTC
TTCTCCAAGCTCTACGTCGTCCTCAGCATTGTCTACCAAACGGCTTCGCG
GACATCTTTGGTCGACAAAGTTCGTCATCTACTCTGACCACAAAGCGCGC
GAGAGCATCACCACGGTTATCACTCTTCCTCCCGGCCGAAGGTTGGTTTG
GGTGGGCTCGACGTTCAACCCTCTGTACGGCCTGAATGGCTCCTCTTCCG
ACAACGCGCGTTGCTTCTAGTAACAGTGTCCCCCTGGACACCTGTCCTCC
CGCCACCTCTCCGCCGCCTTCATCTTCTCTTGATGACCGCCGCAACTGTG
TAGCTGCTCCGGCAGCGTCTCTAACTTCCTTAGCAGCACATCCTGTGCCG
ACAGCACAAACACCGTCGAGTACGGATAGTGTTCTTCTTTTGTCTCCTTT
GTCACAGGAAAAGGGATCTGAGCAACCCGCGACGCCTCGCTTTTCGAGTT
TGCGTGCCGCCGGTACGGCCCCTTCACACGAACAGGTCTTGCGTGGTGGT
TCGCCCCTCGCACCTATCGACCGACCGGGCACTACGGCTTCTGTTCACTT
GGCGCAACGGAGCGCCAACGACACACTTCACCGCTACAGATCAGTGACGC
CGATGCGTCTGCTCCAGCTCCGCTTTGTTCTACGTCTTTCTCGCCGGTCA
ACAACTCTTCGCCAAGCTCTACGTCTTCCTCGCCGGTCGACAATTCTTCG
CCAAGCTCTACGTCGTCCACACCGGTCGACCATTCTTCTCCAAGCTCTAC
GTCGTCCTCAGCATTGTCTACCAAACGGCTTCGCGGACATCTTTGGTCGA
CAAAGTTCGTCATCTACTCTGACCACAAAGCGCGCGAGAGCATCACCACG
GTTATCACTCTTCCTCCCGGCCGAAGGTTGGTTTGGGTGGGCTCGACGTT
CAACCCTCTGTACGGCCTGA
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