mRNA_H-canaliculatus_F_contig12087.1805.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12087.1805.1
Unique NamemRNA_H-canaliculatus_F_contig12087.1805.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig12087.1805.1 vs. uniprot
Match: A0A6H5JY56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY56_9PHAE)

HSP 1 Score: 259 bits (662), Expect = 3.040e-81
Identity = 130/167 (77.84%), Postives = 140/167 (83.83%), Query Frame = 1
Query:    1 MLRHYINMSCQDDDPDAGARQLLGGKPGPKLPPKSRAGGGTSPLHLASCRGHVGVVHELLSAGADATRGDQFGYSALHLAAKHGFPDVITEMLSFSAVDVNLLDESGETALHTAARYSKTMCLSRLLEHGGDLRIRSRSGRRPMDVVGQPQDKYGRQSMPHSATQLA 501
            MLR YINMSCQDD+PDAGARQLLGGKPGPK PPKSRAGGGTSPLHLASCRGHVGVVHELLSAGADATRGDQFGYSA                 SFSAVDVNLLD++ ETALHTAARY KT CLSRLL+HGGD+ + S+SGRR  DVVGQ QDK+GRQS+PH+ATQLA
Sbjct:    1 MLRQYINMSCQDDEPDAGARQLLGGKPGPKPPPKSRAGGGTSPLHLASCRGHVGVVHELLSAGADATRGDQFGYSAXXXXXXXXXXXXXXXXXSFSAVDVNLLDDNSETALHTAARYGKTKCLSRLLDHGGDVGVLSKSGRRAKDVVGQAQDKHGRQSLPHNATQLA 167          
BLAST of mRNA_H-canaliculatus_F_contig12087.1805.1 vs. uniprot
Match: D8LFF3_ECTSI (Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFF3_ECTSI)

HSP 1 Score: 258 bits (658), Expect = 7.060e-81
Identity = 130/167 (77.84%), Postives = 139/167 (83.23%), Query Frame = 1
Query:    1 MLRHYINMSCQDDDPDAGARQLLGGKPGPKLPPKSRAGGGTSPLHLASCRGHVGVVHELLSAGADATRGDQFGYSALHLAAKHGFPDVITEMLSFSAVDVNLLDESGETALHTAARYSKTMCLSRLLEHGGDLRIRSRSGRRPMDVVGQPQDKYGRQSMPHSATQLA 501
            MLR YINMSCQDD+PDAGARQLLGGKPGPK PPKSRAGGGTSPLHLASCRGHVGVVHELLSAGADATRGDQFGYSA                 SFSAVDVNLLD++ ETALHTAARY KT CLSRLL+HGGD+ + S SGRR  DVVGQ QDK+GRQS+PH+ATQLA
Sbjct:    1 MLRQYINMSCQDDEPDAGARQLLGGKPGPKPPPKSRAGGGTSPLHLASCRGHVGVVHELLSAGADATRGDQFGYSAXXXXXXXXXXXXXXXXXSFSAVDVNLLDDNSETALHTAARYGKTKCLSRLLDHGGDVGVLSMSGRRAKDVVGQAQDKHGRQSVPHNATQLA 167          
BLAST of mRNA_H-canaliculatus_F_contig12087.1805.1 vs. uniprot
Match: A0A0L8GIZ8_OCTBM (Death domain-containing protein n=1 Tax=Octopus bimaculoides TaxID=37653 RepID=A0A0L8GIZ8_OCTBM)

HSP 1 Score: 60.8 bits (146), Expect = 3.250e-8
Identity = 39/106 (36.79%), Postives = 57/106 (53.77%), Query Frame = 1
Query:  124 SPLHLASCRGHVGVVHELLSAGADATRGDQFGYSALHLAAKHGFPDVITEMLSFSAVDVNLLDESGETALHTAARYSKTMCLSRLLEHGGDLRIRSRSGRRPMDVV 441
            +PLH A   GHVG++H L+S GAD   GD +G ++LHLA K    +  +E     A+D   L    +  L   AR S  + +S L E G DL  R+    +P+D++
Sbjct:   23 TPLHHAVSNGHVGLIHALVSKGADVNVGDMYGVTSLHLALKKRKFE--SETKHIEALDKCCL----KLGLVKEARLSAAVVVSYLAEQGADLYCRNIYNTKPIDLI 122          
BLAST of mRNA_H-canaliculatus_F_contig12087.1805.1 vs. uniprot
Match: UPI0019605D67 (ankyrin repeat domain-containing protein n=1 Tax=Parashewanella hymeniacidonis TaxID=2807618 RepID=UPI0019605D67)

HSP 1 Score: 61.6 bits (148), Expect = 5.160e-8
Identity = 41/116 (35.34%), Postives = 66/116 (56.90%), Query Frame = 1
Query:  118 GTSPLHLASCRGHVGVVHELLSAGADATRGDQFGYSALHLAAKHGFPDVITEMLSFSAV-DVNLLDESGETALHTAA-RYSKTMCLSRLLEHGGDLRIRSRSGRRPMDVVGQPQDK 459
            G +PLH+A    H  VV EL  AGA     D+ G +A+HL A+ GF D+   ++S     D+++ D+SG TALH A  ++++ +C  +++E G    I +  G  P+ V  + Q+K
Sbjct:  218 GLTPLHIAIYCDHKPVVLELTKAGARPNIRDKNGQTAIHLLAELGFKDLSDPVISSCKDNDIDIKDDSGNTALHIAVYKHNRELC-KKIIEAGSCTSIVNHKGLTPLMVAIKKQNK 332          
BLAST of mRNA_H-canaliculatus_F_contig12087.1805.1 vs. uniprot
Match: A0A7M6DP07_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M6DP07_9CNID)

HSP 1 Score: 60.1 bits (144), Expect = 5.430e-8
Identity = 32/85 (37.65%), Postives = 50/85 (58.82%), Query Frame = 1
Query:  118 GTSPLHLASCRGHVGVVHELLSAGADATRGDQFGYSALHLAAKHGFPDVITEMLSFSAVDVNLLDESGETALHTAARYSKTMCLS 372
            G SP+ +A+C GH+GVV EL+  G +  +  Q GY+ LH AA  G  +++   +  S V++ L + + ETA   A RY K  C++
Sbjct:   39 GKSPIEVATCFGHIGVVEELIKNGVEVQQTSQSGYTLLHWAACWGRLELVKFFVE-SNVNIFLKNNNDETATEMAERYEKMDCVA 122          
BLAST of mRNA_H-canaliculatus_F_contig12087.1805.1 vs. uniprot
Match: A0A7J6B0I7_AMEME (Uncharacterized protein n=1 Tax=Ameiurus melas TaxID=219545 RepID=A0A7J6B0I7_AMEME)

HSP 1 Score: 61.6 bits (148), Expect = 5.620e-8
Identity = 43/122 (35.25%), Postives = 62/122 (50.82%), Query Frame = 1
Query:   85 PKLPPKSRAGGGTSPLHLASCRGHVGVVHELLSAGAD--ATRGDQFGYSALHLAAKHGFPDVITEMLSFSAVDVNLLD-ESGETALHTAARYSKTMCLSRLLEHGGDLRIRSRSGRRPMDVV 441
            P+  PK  +      +  A   G  G +   LSA     AT  D+FG +ALHLAA  G   ++  +L   + D+ L D ESG TALH +A Y    CL  L++HGG L +  + G   +D++
Sbjct:    6 PECTPKCHSPRHAEVIVAALTGGSEGQLKSFLSAYCHNAATLKDEFGRTALHLAASLGKRALLEWLLDSKSADLLLKDKESGWTALHRSAFYGHIHCLMALVKHGGSLSVLDKEGLSVLDII 127          
BLAST of mRNA_H-canaliculatus_F_contig12087.1805.1 vs. uniprot
Match: A0A2D0RQD9_ICTPU (inhibitor of Bruton tyrosine kinase n=3 Tax=Siluroidei TaxID=1489793 RepID=A0A2D0RQD9_ICTPU)

HSP 1 Score: 60.5 bits (145), Expect = 1.410e-7
Identity = 44/122 (36.07%), Postives = 61/122 (50.00%), Query Frame = 1
Query:   85 PKLPPKSRAGGGTSPLHLASCRGHVGVVHELLSAGAD--ATRGDQFGYSALHLAAKHGFPDVITEMLSFSAVDVNLLD-ESGETALHTAARYSKTMCLSRLLEHGGDLRIRSRSGRRPMDVV 441
            P+  PK  +      +  A   G  G +   LSA     AT  D+FG +ALHLAA  G   ++  +L   + D+ L D ESG TALH +A Y    CL  L++HGG L I  + G   +D+ 
Sbjct:    6 PECTPKCHSPRHAEVIVAALTGGSEGQLKTFLSAYCHNAATLKDEFGRTALHLAASLGKRALLEWLLDSKSADLLLKDKESGWTALHRSAFYGHIHCLMALVKHGGSLSIPDKEGLSVLDIT 127          
BLAST of mRNA_H-canaliculatus_F_contig12087.1805.1 vs. uniprot
Match: A0A1S3IG41_LINUN (transient receptor potential cation channel subfamily A member 1-like n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3IG41_LINUN)

HSP 1 Score: 60.1 bits (144), Expect = 1.890e-7
Identity = 33/88 (37.50%), Postives = 51/88 (57.95%), Query Frame = 1
Query:  127 PLHLASCRGHVGVVHELLSAGADATRGDQFGYSALHLAAKHGFPDVITEMLSFSAVDVNLLDESGETALHTAARYSKTMCLSRLLEHG 390
            PLHLA   G+  +V  L+   A  ++  + G S LHLAAK G  D +TE+L+  +  ++++D  G+TALH +AR      +  LL+ G
Sbjct:  392 PLHLACSAGNAAMVKALIKFKASVSQNIK-GESPLHLAAKSGSLDCVTELLNVFSSSLDMIDCEGDTALHVSARQGHVQLVKALLDQG 478          
BLAST of mRNA_H-canaliculatus_F_contig12087.1805.1 vs. uniprot
Match: A0A6J2W7M8_CHACN (inhibitor of Bruton tyrosine kinase n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2W7M8_CHACN)

HSP 1 Score: 60.1 bits (144), Expect = 1.910e-7
Identity = 44/122 (36.07%), Postives = 60/122 (49.18%), Query Frame = 1
Query:   85 PKLPPKSRAGGGTSPLHLASCRGHVGVVHELLSAGA--DATRGDQFGYSALHLAAKHGFPDVITEMLSFSAVDVNLLD-ESGETALHTAARYSKTMCLSRLLEHGGDLRIRSRSGRRPMDVV 441
            P   PK R+      +  A   G  G +   LSA     AT  D FG +ALHLAA  G   ++  +L     D+ + D ESG TALH +A Y +  CL  L++HGG L  + R G   +D+ 
Sbjct:    6 PDCTPKCRSPRHAREVVAAMTGGSEGKLRSFLSAHCYNAATLRDDFGRTALHLAASLGKRALLEWLLDSKKADILVKDKESGWTALHRSAFYGQIHCLMALIKHGGVLSTQDREGLSVLDLT 127          
BLAST of mRNA_H-canaliculatus_F_contig12087.1805.1 vs. uniprot
Match: UPI0008540824 (ankyrin repeat domain-containing protein 22 n=1 Tax=Nanorana parkeri TaxID=125878 RepID=UPI0008540824)

HSP 1 Score: 58.2 bits (139), Expect = 2.310e-7
Identity = 41/137 (29.93%), Postives = 58/137 (42.34%), Query Frame = 1
Query:  115 GGTSPLHLASCRGHVGVVHELLSAGADATRGDQFGYSALHLAAKHGFP----------------------------DVITEMLSFSAVDVNLLDESGETALHTAARYSKTMCLSRLLEHGGDLRIRSRSGRRPMDVV 441
            GG +PL  A  RGH+ VV  LLS  AD    +    + LH A +  F                             + +  +L  S VDVN +D SG TALH A +      +  LLE   +L I+++ G  P+D+ 
Sbjct:   39 GGDTPLICACRRGHIAVVRYLLSMKADVNLPNNKERTCLHYAVRKRFTFLDYLLIVILMPVMLIGYVIMISKGKQNERLIRLLLHSGVDVNAVDNSGNTALHYACKMKSQAIIPILLEANANLYIKNKEGESPVDIA 175          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12087.1805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JY56_9PHAE3.040e-8177.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFF3_ECTSI7.060e-8177.84Chain A, Crystal Structure Of A Designed Selected ... [more]
A0A0L8GIZ8_OCTBM3.250e-836.79Death domain-containing protein n=1 Tax=Octopus bi... [more]
UPI0019605D675.160e-835.34ankyrin repeat domain-containing protein n=1 Tax=P... [more]
A0A7M6DP07_9CNID5.430e-837.65Uncharacterized protein n=1 Tax=Clytia hemisphaeri... [more]
A0A7J6B0I7_AMEME5.620e-835.25Uncharacterized protein n=1 Tax=Ameiurus melas Tax... [more]
A0A2D0RQD9_ICTPU1.410e-736.07inhibitor of Bruton tyrosine kinase n=3 Tax=Siluro... [more]
A0A1S3IG41_LINUN1.890e-737.50transient receptor potential cation channel subfam... [more]
A0A6J2W7M8_CHACN1.910e-736.07inhibitor of Bruton tyrosine kinase n=1 Tax=Chanos... [more]
UPI00085408242.310e-729.93ankyrin repeat domain-containing protein 22 n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12087contigH-canaliculatus_F_contig12087:3319..3819 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score260.0
Seed ortholog evalue7.6e-67
Seed eggNOG ortholog2880.D8LFF3
EggNOG free text desc.Ankyrin repeat
EggNOG OGs2D0AV@1,2SDGK@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-07_006060.1
Exons1
Model size501
Cds size501
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928920.7045183-CDS-H-canaliculatus_F_contig12087:3318..38191622928920.7045183-CDS-H-canaliculatus_F_contig12087:3318..3819Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12087 3319..3819 +
1696845612.9244874-CDS-H-canaliculatus_F_contig12087:3318..38191696845612.9244874-CDS-H-canaliculatus_F_contig12087:3318..3819Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12087 3319..3819 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12087.1805.1prot_H-canaliculatus_F_contig12087.1805.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12087 3319..3819 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12087.1805.1

>prot_H-canaliculatus_F_contig12087.1805.1 ID=prot_H-canaliculatus_F_contig12087.1805.1|Name=mRNA_H-canaliculatus_F_contig12087.1805.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=167bp
MLRHYINMSCQDDDPDAGARQLLGGKPGPKLPPKSRAGGGTSPLHLASCR
GHVGVVHELLSAGADATRGDQFGYSALHLAAKHGFPDVITEMLSFSAVDV
NLLDESGETALHTAARYSKTMCLSRLLEHGGDLRIRSRSGRRPMDVVGQP
QDKYGRQSMPHSATQLA
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mRNA from alignment at H-canaliculatus_F_contig12087:3319..3819+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12087.1805.1 ID=mRNA_H-canaliculatus_F_contig12087.1805.1|Name=mRNA_H-canaliculatus_F_contig12087.1805.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=501bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12087:3319..3819+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTCCGGCACTACATCAACATGTCCTGCCAGGACGATGATCCCGACGC CGGTGCCAGACAGCTCCTTGGTGGCAAGCCGGGCCCGAAGCTTCCTCCCA AGTCCAGAGCAGGGGGTGGTACCTCTCCGCTTCACCTCGCCTCGTGCAGG GGACACGTGGGAGTTGTCCACGAGCTGCTGAGCGCCGGGGCGGACGCCAC TCGCGGAGACCAGTTCGGGTACTCGGCACTCCACCTGGCGGCGAAGCACG GGTTCCCGGACGTCATAACCGAGATGCTCTCGTTCAGCGCCGTGGACGTC AACCTCCTGGACGAGAGCGGGGAGACGGCGCTGCACACCGCGGCGCGGTA CTCCAAGACGATGTGCCTCTCTCGCCTGCTCGAGCACGGGGGCGACTTGA GGATCCGGTCCAGGTCCGGGCGGCGGCCGATGGACGTCGTGGGGCAGCCG CAGGACAAGTACGGCCGACAGTCGATGCCGCACAGCGCGACGCAGCTGGC T
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12087:3319..3819+

>mRNA_H-canaliculatus_F_contig12087.1805.1 ID=mRNA_H-canaliculatus_F_contig12087.1805.1|Name=mRNA_H-canaliculatus_F_contig12087.1805.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1002bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12087:3319..3819+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTCCGGCACTACATCAACATGTCCTGCCAGGACGATGATCCCGACGC
CGGTGCCAGACAGCTCCTTGGTGGCAAGCCGGGCCCGAAGCTTCCTCCCA
AGTCCAGAGCAGGGGGTGGTACCTCTCCGCTTCACCTCGCCTCGTGCAGG
GGACACGTGGGAGTTGTCCACGAGCTGCTGAGCGCCGGGGCGGACGCCAC
TCGCGGAGACCAGTTCGGGTACTCGGCACTCCACCTGGCGGCGAAGCACG
GGTTCCCGGACGTCATAACCGAGATGCTCTCGTTCAGCGCCGTGGACGTC
AACCTCCTGGACGAGAGCGGGGAGACGGCGCTGCACACCGCGGCGCGGTA
CTCCAAGACGATGTGCCTCTCTCGCCTGCTCGAGCACGGGGGCGACTTGA
GGATCCGGTCCAGGTCCGGGCGGCGGCCGATGGACGTCGTGGGGCAGCCG
CAGGACAAGTACGGCCGACAGTCGATGCCGCACAGCGCGACGCAGCTGGC
TATGCTCCGGCACTACATCAACATGTCCTGCCAGGACGATGATCCCGACG
CCGGTGCCAGACAGCTCCTTGGTGGCAAGCCGGGCCCGAAGCTTCCTCCC
AAGTCCAGAGCAGGGGGTGGTACCTCTCCGCTTCACCTCGCCTCGTGCAG
GGGACACGTGGGAGTTGTCCACGAGCTGCTGAGCGCCGGGGCGGACGCCA
CTCGCGGAGACCAGTTCGGGTACTCGGCACTCCACCTGGCGGCGAAGCAC
GGGTTCCCGGACGTCATAACCGAGATGCTCTCGTTCAGCGCCGTGGACGT
CAACCTCCTGGACGAGAGCGGGGAGACGGCGCTGCACACCGCGGCGCGGT
ACTCCAAGACGATGTGCCTCTCTCGCCTGCTCGAGCACGGGGGCGACTTG
AGGATCCGGTCCAGGTCCGGGCGGCGGCCGATGGACGTCGTGGGGCAGCC
GCAGGACAAGTACGGCCGACAGTCGATGCCGCACAGCGCGACGCAGCTGG
CT
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